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Title: Commits · skchronicles/samplot · GitHub

Open Graph Title: Commits · skchronicles/samplot

X Title: Commits · skchronicles/samplot

Description: Plot structural variant signals from many BAMs and CRAMs - Commits · skchronicles/samplot

Open Graph Description: Plot structural variant signals from many BAMs and CRAMs - Commits · skchronicles/samplot

X Description: Plot structural variant signals from many BAMs and CRAMs - Commits · skchronicles/samplot

Opengraph URL: https://github.com/skchronicles/samplot

X: @github

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Domain: github.com

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samplot	https://github.com/skchronicles/samplot
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Merge pull request #169 from pontushojer/missing-img-error	https://github.com/skchronicles/samplot/commit/70cad157e7764c59a6149538305dcccaea8e11b9
	https://github.com/mchowdh200
mchowdh200	https://github.com/skchronicles/samplot/commits?author=mchowdh200
70cad15	https://github.com/skchronicles/samplot/commit/70cad157e7764c59a6149538305dcccaea8e11b9
	https://github.com/skchronicles/samplot/tree/70cad157e7764c59a6149538305dcccaea8e11b9
Show a popup error when an image is missing	https://github.com/skchronicles/samplot/commit/e2180f07c35b5356612bc3790e7d39d9f3135a41
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
e2180f0	https://github.com/skchronicles/samplot/commit/e2180f07c35b5356612bc3790e7d39d9f3135a41
	https://github.com/skchronicles/samplot/tree/e2180f07c35b5356612bc3790e7d39d9f3135a41
fix tests and chr prefix strip (#168)	https://github.com/skchronicles/samplot/commit/16560c18bfaf102933c4a7b89e3b28b9230b41d5
	https://github.com/jbelyeu
jbelyeu	https://github.com/skchronicles/samplot/commits?author=jbelyeu
16560c1	https://github.com/skchronicles/samplot/commit/16560c18bfaf102933c4a7b89e3b28b9230b41d5
	https://github.com/skchronicles/samplot/tree/16560c18bfaf102933c4a7b89e3b28b9230b41d5
Merge pull request #157 from pontushojer/names-missing	https://github.com/skchronicles/samplot/commit/f3968cf7f0412afa156018e747d6d870d718503f
	https://github.com/ryanlayer
ryanlayer	https://github.com/skchronicles/samplot/commits?author=ryanlayer
f3968cf	https://github.com/skchronicles/samplot/commit/f3968cf7f0412afa156018e747d6d870d718503f
	https://github.com/skchronicles/samplot/tree/f3968cf7f0412afa156018e747d6d870d718503f
Merge pull request #158 from pontushojer/transcript-update	https://github.com/skchronicles/samplot/commit/953c0266a4782a5d5e620163da9ecb9985241b24
	https://github.com/ryanlayer
ryanlayer	https://github.com/skchronicles/samplot/commits?author=ryanlayer
953c026	https://github.com/skchronicles/samplot/commit/953c0266a4782a5d5e620163da9ecb9985241b24
	https://github.com/skchronicles/samplot/tree/953c0266a4782a5d5e620163da9ecb9985241b24
Handle case where a gene entry from a GFF is missing the "Name" attribute.	https://github.com/skchronicles/samplot/commit/533c81b7cb368330f74a5c861082583d843cbbd3
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
533c81b	https://github.com/skchronicles/samplot/commit/533c81b7cb368330f74a5c861082583d843cbbd3
	https://github.com/skchronicles/samplot/tree/533c81b7cb368330f74a5c861082583d843cbbd3
Transcript and exons should end exactly on defined position. Default capstyle project these outside of start/end positions	https://github.com/skchronicles/samplot/commit/69209cadd1779b0515edd12fb08b64d34cf87a79
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
69209ca	https://github.com/skchronicles/samplot/commit/69209cadd1779b0515edd12fb08b64d34cf87a79
	https://github.com/skchronicles/samplot/tree/69209cadd1779b0515edd12fb08b64d34cf87a79
Move transcript name to top of drawing	https://github.com/skchronicles/samplot/commit/091a9e2f17ec69c2e3211caad1e31237aab616e5
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
091a9e2	https://github.com/skchronicles/samplot/commit/091a9e2f17ec69c2e3211caad1e31237aab616e5
	https://github.com/skchronicles/samplot/tree/091a9e2f17ec69c2e3211caad1e31237aab616e5
Move arrows into transcripts and add multiple throughout transcript at regular intervals.	https://github.com/skchronicles/samplot/commit/d5cc9d60a433c9dec97b441d471d663bd118c0dc
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
d5cc9d6	https://github.com/skchronicles/samplot/commit/d5cc9d60a433c9dec97b441d471d663bd118c0dc
	https://github.com/skchronicles/samplot/tree/d5cc9d60a433c9dec97b441d471d663bd118c0dc
Unstack overlapping transcripts	https://github.com/skchronicles/samplot/commit/fdbdb26fa50d208bc127711a00e8e080a970b448
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
fdbdb26	https://github.com/skchronicles/samplot/commit/fdbdb26fa50d208bc127711a00e8e080a970b448
	https://github.com/skchronicles/samplot/tree/fdbdb26fa50d208bc127711a00e8e080a970b448
fix samplot_vcf_test.sh	https://github.com/skchronicles/samplot/commit/5007a137dd907fb43cc841dbeeba0fbecb53681e
5007a13	https://github.com/skchronicles/samplot/commit/5007a137dd907fb43cc841dbeeba0fbecb53681e
	https://github.com/skchronicles/samplot/tree/5007a137dd907fb43cc841dbeeba0fbecb53681e
update readme with up to date command options	https://github.com/skchronicles/samplot/commit/196f04ecc780626aa5af488c76aed3720dcfb7fe
196f04e	https://github.com/skchronicles/samplot/commit/196f04ecc780626aa5af488c76aed3720dcfb7fe
	https://github.com/skchronicles/samplot/tree/196f04ecc780626aa5af488c76aed3720dcfb7fe
typo in help string for jitter	https://github.com/skchronicles/samplot/commit/92fa27059d9611f7b2cd5bd83f743c6b92f4478e
92fa270	https://github.com/skchronicles/samplot/commit/92fa27059d9611f7b2cd5bd83f743c6b92f4478e
	https://github.com/skchronicles/samplot/tree/92fa27059d9611f7b2cd5bd83f743c6b92f4478e
Merge pull request #150 from pontushojer/vcf-multithread	https://github.com/skchronicles/samplot/commit/4ac4ce0976a6db6e6a9b38d4c48b3f99a3654622
	https://github.com/mchowdh200
mchowdh200	https://github.com/skchronicles/samplot/commits?author=mchowdh200
4ac4ce0	https://github.com/skchronicles/samplot/commit/4ac4ce0976a6db6e6a9b38d4c48b3f99a3654622
	https://github.com/skchronicles/samplot/tree/4ac4ce0976a6db6e6a9b38d4c48b3f99a3654622
Merge pull request #151 from pontushojer/rm-option	https://github.com/skchronicles/samplot/commit/44b7adeec5604289c9539fee78dd28bffbe96c17
	https://github.com/ryanlayer
ryanlayer	https://github.com/skchronicles/samplot/commits?author=ryanlayer
44b7ade	https://github.com/skchronicles/samplot/commit/44b7adeec5604289c9539fee78dd28bffbe96c17
	https://github.com/skchronicles/samplot/tree/44b7adeec5604289c9539fee78dd28bffbe96c17
Merge pull request #147 from pontushojer/jitter	https://github.com/skchronicles/samplot/commit/ebfa497dc7140adbd2bf8fbab6c2ef6e6b4a6a9c
	https://github.com/ryanlayer
ryanlayer	https://github.com/skchronicles/samplot/commits?author=ryanlayer
ebfa497	https://github.com/skchronicles/samplot/commit/ebfa497dc7140adbd2bf8fbab6c2ef6e6b4a6a9c
	https://github.com/skchronicles/samplot/tree/ebfa497dc7140adbd2bf8fbab6c2ef6e6b4a6a9c
Remove unused option `common_insert_size` (fix https://github.com/ryanlayer/samplot/issues/148)	https://github.com/skchronicles/samplot/commit/d2d90e1e4940b48fc96729238b348dbae8b0df2d
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
d2d90e1	https://github.com/skchronicles/samplot/commit/d2d90e1e4940b48fc96729238b348dbae8b0df2d
	https://github.com/skchronicles/samplot/tree/d2d90e1e4940b48fc96729238b348dbae8b0df2d
Jitter also for linked reads	https://github.com/skchronicles/samplot/commit/e22744a3610540b07b1f2ba54b0eab259487899f
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
e22744a	https://github.com/skchronicles/samplot/commit/e22744a3610540b07b1f2ba54b0eab259487899f
	https://github.com/skchronicles/samplot/tree/e22744a3610540b07b1f2ba54b0eab259487899f
Add argument --jitter to add jitter to insert sizes.	https://github.com/skchronicles/samplot/commit/92580e1da3b2f14884f552b4fba295a27c600c80
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
92580e1	https://github.com/skchronicles/samplot/commit/92580e1da3b2f14884f552b4fba295a27c600c80
	https://github.com/skchronicles/samplot/tree/92580e1da3b2f14884f552b4fba295a27c600c80
Merge pull request #149 from pontushojer/fix-vcf-tests	https://github.com/skchronicles/samplot/commit/09e3299575e6ec3ca76ef6d82ded32a77371e93c
	https://github.com/ryanlayer
ryanlayer	https://github.com/skchronicles/samplot/commits?author=ryanlayer
09e3299	https://github.com/skchronicles/samplot/commit/09e3299575e6ec3ca76ef6d82ded32a77371e93c
	https://github.com/skchronicles/samplot/tree/09e3299575e6ec3ca76ef6d82ded32a77371e93c
Merge pull request #146 from pontushojer/cleanup-unused-functions	https://github.com/skchronicles/samplot/commit/07bd6bb831625136c0680c86fab8d99e62105c33
	https://github.com/ryanlayer
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07bd6bb	https://github.com/skchronicles/samplot/commit/07bd6bb831625136c0680c86fab8d99e62105c33
	https://github.com/skchronicles/samplot/tree/07bd6bb831625136c0680c86fab8d99e62105c33
Fix incomplete testing, tests `denovo_only_noped` and `denovo_only` not run	https://github.com/skchronicles/samplot/commit/bf419d3e24977538a011fc4479ae06ec180c60fa
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
bf419d3	https://github.com/skchronicles/samplot/commit/bf419d3e24977538a011fc4479ae06ec180c60fa
	https://github.com/skchronicles/samplot/tree/bf419d3e24977538a011fc4479ae06ec180c60fa
Enable multithread plotting from VCF	https://github.com/skchronicles/samplot/commit/152031a81cf4d572721c9cdf4515acb569ea8b4f
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
152031a	https://github.com/skchronicles/samplot/commit/152031a81cf4d572721c9cdf4515acb569ea8b4f
	https://github.com/skchronicles/samplot/tree/152031a81cf4d572721c9cdf4515acb569ea8b4f
Enable plot generation without using subprocess	https://github.com/skchronicles/samplot/commit/b96a1f9304a2887f93a73baf82b163864b097c7f
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
b96a1f9	https://github.com/skchronicles/samplot/commit/b96a1f9304a2887f93a73baf82b163864b097c7f
	https://github.com/skchronicles/samplot/tree/b96a1f9304a2887f93a73baf82b163864b097c7f
Jitter lines in y-dim to avoid overlaps	https://github.com/skchronicles/samplot/commit/982f60a025974d6bda7c645d7897ae4b6a1db2ac
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
982f60a	https://github.com/skchronicles/samplot/commit/982f60a025974d6bda7c645d7897ae4b6a1db2ac
	https://github.com/skchronicles/samplot/tree/982f60a025974d6bda7c645d7897ae4b6a1db2ac
Remove unused functions identified with (vulture)[https://github.com/jendrikseipp/vulture]	https://github.com/skchronicles/samplot/commit/b7f650ad28c0dd36f9d7d07e9ff05223f4b88835
	https://github.com/pontushojer
pontushojer	https://github.com/skchronicles/samplot/commits?author=pontushojer
b7f650a	https://github.com/skchronicles/samplot/commit/b7f650ad28c0dd36f9d7d07e9ff05223f4b88835
	https://github.com/skchronicles/samplot/tree/b7f650ad28c0dd36f9d7d07e9ff05223f4b88835
update xcode dep to 12.5.1	https://github.com/skchronicles/samplot/commit/34a3f37eb7042b30e074df4fb3937708b1164460
	https://github.com/jbelyeu
jbelyeu	https://github.com/skchronicles/samplot/commits?author=jbelyeu
34a3f37	https://github.com/skchronicles/samplot/commit/34a3f37eb7042b30e074df4fb3937708b1164460
	https://github.com/skchronicles/samplot/tree/34a3f37eb7042b30e074df4fb3937708b1164460
add bump to v 1.3.0 (#142)	https://github.com/skchronicles/samplot/commit/905ce04aac979f2b4ce553751435836621009140
	https://github.com/jbelyeu
jbelyeu	https://github.com/skchronicles/samplot/commits?author=jbelyeu
905ce04	https://github.com/skchronicles/samplot/commit/905ce04aac979f2b4ce553751435836621009140
	https://github.com/skchronicles/samplot/tree/905ce04aac979f2b4ce553751435836621009140
Allow manual scaling of annotation track size and other fixes (#141)	https://github.com/skchronicles/samplot/commit/a1c1342930ae433e6f9672b3226a2bc22283389b
	https://github.com/jbelyeu
jbelyeu	https://github.com/skchronicles/samplot/commits?author=jbelyeu
a1c1342	https://github.com/skchronicles/samplot/commit/a1c1342930ae433e6f9672b3226a2bc22283389b
	https://github.com/skchronicles/samplot/tree/a1c1342930ae433e6f9672b3226a2bc22283389b
Update README.md	https://github.com/skchronicles/samplot/commit/a71cc5c89a7c932629be717df99fecec843618ec
	https://github.com/jbelyeu
jbelyeu	https://github.com/skchronicles/samplot/commits?author=jbelyeu
a71cc5c	https://github.com/skchronicles/samplot/commit/a71cc5c89a7c932629be717df99fecec843618ec
	https://github.com/skchronicles/samplot/tree/a71cc5c89a7c932629be717df99fecec843618ec
Merge pull request #135 from jbelyeu/master	https://github.com/skchronicles/samplot/commit/7026b81ff091cc68023756420eb282a9a2c08bbf
	https://github.com/ryanlayer
ryanlayer	https://github.com/skchronicles/samplot/commits?author=ryanlayer
7026b81	https://github.com/skchronicles/samplot/commit/7026b81ff091cc68023756420eb282a9a2c08bbf
	https://github.com/skchronicles/samplot/tree/7026b81ff091cc68023756420eb282a9a2c08bbf
generalized exception handling for tabix	https://github.com/skchronicles/samplot/commit/43043121ee454157dd1d47daebb3a5dd49c69cb2
	https://github.com/jbelyeu
jbelyeu	https://github.com/skchronicles/samplot/commits?author=jbelyeu
4304312	https://github.com/skchronicles/samplot/commit/43043121ee454157dd1d47daebb3a5dd49c69cb2
	https://github.com/skchronicles/samplot/tree/43043121ee454157dd1d47daebb3a5dd49c69cb2
added csi files	https://github.com/skchronicles/samplot/commit/b9c789e8688b6e9374307d12872a0629957dba1c
	https://github.com/jbelyeu
jbelyeu	https://github.com/skchronicles/samplot/commits?author=jbelyeu
b9c789e	https://github.com/skchronicles/samplot/commit/b9c789e8688b6e9374307d12872a0629957dba1c
	https://github.com/skchronicles/samplot/tree/b9c789e8688b6e9374307d12872a0629957dba1c
Merge remote-tracking branch 'upstream/master'	https://github.com/skchronicles/samplot/commit/d495ee1e15047044729af3fe0d74dfb656f5a20c
	https://github.com/jbelyeu
jbelyeu	https://github.com/skchronicles/samplot/commits?author=jbelyeu
d495ee1	https://github.com/skchronicles/samplot/commit/d495ee1e15047044729af3fe0d74dfb656f5a20c
	https://github.com/skchronicles/samplot/tree/d495ee1e15047044729af3fe0d74dfb656f5a20c
enabled csi indices for annotation files	https://github.com/skchronicles/samplot/commit/94b1c1c4626196c7c2b4004cc388bd94cc63b7f0
	https://github.com/jbelyeu
jbelyeu	https://github.com/skchronicles/samplot/commits?author=jbelyeu
94b1c1c	https://github.com/skchronicles/samplot/commit/94b1c1c4626196c7c2b4004cc388bd94cc63b7f0
	https://github.com/skchronicles/samplot/tree/94b1c1c4626196c7c2b4004cc388bd94cc63b7f0
Next	https://github.com/skchronicles/samplot/commits?after=70cad157e7764c59a6149538305dcccaea8e11b9+34
	https://github.com
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