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Title: KeyError: 'Name' · Issue #196 · ryanlayer/samplot · GitHub

Open Graph Title: KeyError: 'Name' · Issue #196 · ryanlayer/samplot

X Title: KeyError: 'Name' · Issue #196 · ryanlayer/samplot

Description: time samplot plot -n 1A 2A 3A -b /xxx/1A.Mdup.realigned.recal.bam /xxx/2A.Mdup.realigned.recal.bam /xxx/3A.Mdup.realigned.recal.bam -o chrx_start_end.png -c chrx -s start -e end -t DUP -w 47 -T /xxx/genome/hg38/Homo_sapiens.GRCh38.111.so...

Open Graph Description: time samplot plot -n 1A 2A 3A -b /xxx/1A.Mdup.realigned.recal.bam /xxx/2A.Mdup.realigned.recal.bam /xxx/3A.Mdup.realigned.recal.bam -o chrx_start_end.png -c chrx -s start -e end -t DUP -w 47 -T /xx...

X Description: time samplot plot -n 1A 2A 3A -b /xxx/1A.Mdup.realigned.recal.bam /xxx/2A.Mdup.realigned.recal.bam /xxx/3A.Mdup.realigned.recal.bam -o chrx_start_end.png -c chrx -s start -e end -t DUP -w 47 -T /xx...

Opengraph URL: https://github.com/ryanlayer/samplot/issues/196

X: @github

direct link

Domain: github.com


Hey, it has json ld scripts:
{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"KeyError: 'Name'","articleBody":"time samplot plot \\\r\n    -n 1A 2A 3A \\\r\n    -b /xxx/1A.Mdup.realigned.recal.bam \\\r\n      /xxx/2A.Mdup.realigned.recal.bam \\\r\n      /xxx/3A.Mdup.realigned.recal.bam \\\r\n    -o chrx_start_end.png \\\r\n    -c chrx \\\r\n    -s start \\\r\n    -e end \\\r\n    -t DUP \\\r\n    -w 47 \\\r\n    -T /xxx/genome/hg38/Homo_sapiens.GRCh38.111.sort.gff3.gz\r\n\r\n$ bash samplot.test.sh\r\nTraceback (most recent call last):\r\n  File \"/Parastor300s_G30S/zhangjj/software/miniconda3/bin/samplot\", line 10, in \u003cmodule\u003e\r\n    sys.exit(main())\r\n  File \"/Parastor300s_G30S/zhangjj/software/miniconda3/lib/python3.9/site-packages/samplot/__main__.py\", line 31, in main\r\n    args.func(parser, args, extra_args)\r\n  File \"/Parastor300s_G30S/zhangjj/software/miniconda3/lib/python3.9/site-packages/samplot/samplot.py\", line 3655, in plot\r\n    plot_transcript(\r\n  File \"/Parastor300s_G30S/zhangjj/software/miniconda3/lib/python3.9/site-packages/samplot/samplot.py\", line 3419, in plot_transcript\r\n    transcript_plan = get_transcript_plan(ranges, transcript_file)\r\n  File \"/Parastor300s_G30S/zhangjj/software/miniconda3/lib/python3.9/site-packages/samplot/samplot.py\", line 3331, in get_transcript_plan\r\n    genes[info[\"Name\"]] = [\r\nKeyError: 'Name'\r\n\r\nreal    0m2.285s\r\nuser    0m1.503s\r\nsys     0m1.398s\r\n\r\n","author":{"url":"https://github.com/jingydz","@type":"Person","name":"jingydz"},"datePublished":"2024-05-08T14:28:56.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":0},"url":"https://github.com/196/samplot/issues/196"}

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KeyError: 'Name'https://github.com/ryanlayer/samplot/issues/196#top
https://github.com/jingydz
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on May 8, 2024https://github.com/ryanlayer/samplot/issues/196#issue-2285751986
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