René's URL Explorer Experiment


Title: GitHub - refresh-bio/SPLASH · GitHub

Open Graph Title: GitHub - refresh-bio/SPLASH

X Title: GitHub - refresh-bio/SPLASH

Description: Contribute to refresh-bio/SPLASH development by creating an account on GitHub.

Open Graph Description: Contribute to refresh-bio/SPLASH development by creating an account on GitHub.

X Description: Contribute to refresh-bio/SPLASH development by creating an account on GitHub.

Opengraph URL: https://github.com/refresh-bio/SPLASH

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:876b2e53-5389-a6f9-414d-d40aacc8c757
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idA1A4:FCE38:C9E4723:CF9EE55:6A4C50B4
html-safe-nonce7d1990aeee24471d0f659025067c72ea2e92efc03f190cc748968eb2acc1c940
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJBMUE0OkZDRTM4OkM5RTQ3MjM6Q0Y5RUU1NTo2QTRDNTBCNCIsInZpc2l0b3JfaWQiOiI4ODUzMTM3MDU3MzM0OTcyNTk2IiwicmVnaW9uX2VkZ2UiOiJzZWEiLCJyZWdpb25fcmVuZGVyIjoic2VhIn0=
visitor-hmac29d338e06f525f0ba36d903fa33db6fbd138b039bb12cea08fac719c0c2ffacc
hovercard-subject-tagrepository:610749820
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/refresh-bio/SPLASH
twitter:imagehttps://opengraph.githubassets.com/c63d4da313fbe2a6187a2c0a93242904ae69c8d028b737cc2108e200059b1ce9/refresh-bio/SPLASH
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/c63d4da313fbe2a6187a2c0a93242904ae69c8d028b737cc2108e200059b1ce9/refresh-bio/SPLASH
og:image:altContribute to refresh-bio/SPLASH development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None3d11bb817438277de2a940854450e83a7d32b6aeb5014e9e6b00a6423900251c
turbo-cache-controlno-cache
go-importgithub.com/refresh-bio/SPLASH git https://github.com/refresh-bio/SPLASH.git
octolytics-dimension-user_id16046310
octolytics-dimension-user_loginrefresh-bio
octolytics-dimension-repository_id610749820
octolytics-dimension-repository_nworefresh-bio/SPLASH
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id610749820
octolytics-dimension-repository_network_root_nworefresh-bio/SPLASH
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release65d78903193f110d7a9d1f8587c6dc3cb911aae0
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/refresh-bio/SPLASH#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Frefresh-bio%2FSPLASH
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Frefresh-bio%2FSPLASH
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=refresh-bio%2FSPLASH
Reloadhttps://github.com/refresh-bio/SPLASH
Reloadhttps://github.com/refresh-bio/SPLASH
Reloadhttps://github.com/refresh-bio/SPLASH
Please reload this pagehttps://github.com/refresh-bio/SPLASH
refresh-bio https://github.com/refresh-bio
SPLASHhttps://github.com/refresh-bio/SPLASH
Notifications https://github.com/login?return_to=%2Frefresh-bio%2FSPLASH
Fork 14 https://github.com/login?return_to=%2Frefresh-bio%2FSPLASH
Star 93 https://github.com/login?return_to=%2Frefresh-bio%2FSPLASH
Code https://github.com/refresh-bio/SPLASH
Issues 29 https://github.com/refresh-bio/SPLASH/issues
Pull requests 2 https://github.com/refresh-bio/SPLASH/pulls
Actions https://github.com/refresh-bio/SPLASH/actions
Projects https://github.com/refresh-bio/SPLASH/projects
Wiki https://github.com/refresh-bio/SPLASH/wiki
Security and quality 0 https://github.com/refresh-bio/SPLASH/security
Insights https://github.com/refresh-bio/SPLASH/pulse
Code https://github.com/refresh-bio/SPLASH
Issues https://github.com/refresh-bio/SPLASH/issues
Pull requests https://github.com/refresh-bio/SPLASH/pulls
Actions https://github.com/refresh-bio/SPLASH/actions
Projects https://github.com/refresh-bio/SPLASH/projects
Wiki https://github.com/refresh-bio/SPLASH/wiki
Security and quality https://github.com/refresh-bio/SPLASH/security
Insights https://github.com/refresh-bio/SPLASH/pulse
https://github.com/refresh-bio/SPLASH
Brancheshttps://github.com/refresh-bio/SPLASH/branches
Tagshttps://github.com/refresh-bio/SPLASH/tags
https://github.com/refresh-bio/SPLASH/branches
https://github.com/refresh-bio/SPLASH/tags
137 Commitshttps://github.com/refresh-bio/SPLASH/commits/master/
https://github.com/refresh-bio/SPLASH/commits/master/
OASIShttps://github.com/refresh-bio/SPLASH/tree/master/OASIS
OASIShttps://github.com/refresh-bio/SPLASH/tree/master/OASIS
analysis_notebookshttps://github.com/refresh-bio/SPLASH/tree/master/analysis_notebooks
analysis_notebookshttps://github.com/refresh-bio/SPLASH/tree/master/analysis_notebooks
build_toolshttps://github.com/refresh-bio/SPLASH/tree/master/build_tools
build_toolshttps://github.com/refresh-bio/SPLASH/tree/master/build_tools
examplehttps://github.com/refresh-bio/SPLASH/tree/master/example
examplehttps://github.com/refresh-bio/SPLASH/tree/master/example
libshttps://github.com/refresh-bio/SPLASH/tree/master/libs
libshttps://github.com/refresh-bio/SPLASH/tree/master/libs
postprocessinghttps://github.com/refresh-bio/SPLASH/tree/master/postprocessing
postprocessinghttps://github.com/refresh-bio/SPLASH/tree/master/postprocessing
srchttps://github.com/refresh-bio/SPLASH/tree/master/src
srchttps://github.com/refresh-bio/SPLASH/tree/master/src
.dockerignorehttps://github.com/refresh-bio/SPLASH/blob/master/.dockerignore
.dockerignorehttps://github.com/refresh-bio/SPLASH/blob/master/.dockerignore
.gitignorehttps://github.com/refresh-bio/SPLASH/blob/master/.gitignore
.gitignorehttps://github.com/refresh-bio/SPLASH/blob/master/.gitignore
.gitmoduleshttps://github.com/refresh-bio/SPLASH/blob/master/.gitmodules
.gitmoduleshttps://github.com/refresh-bio/SPLASH/blob/master/.gitmodules
Dockerfilehttps://github.com/refresh-bio/SPLASH/blob/master/Dockerfile
Dockerfilehttps://github.com/refresh-bio/SPLASH/blob/master/Dockerfile
LICENSEhttps://github.com/refresh-bio/SPLASH/blob/master/LICENSE
LICENSEhttps://github.com/refresh-bio/SPLASH/blob/master/LICENSE
Makefilehttps://github.com/refresh-bio/SPLASH/blob/master/Makefile
Makefilehttps://github.com/refresh-bio/SPLASH/blob/master/Makefile
README.mdhttps://github.com/refresh-bio/SPLASH/blob/master/README.md
README.mdhttps://github.com/refresh-bio/SPLASH/blob/master/README.md
SPLASH_build.Rhttps://github.com/refresh-bio/SPLASH/blob/master/SPLASH_build.R
SPLASH_build.Rhttps://github.com/refresh-bio/SPLASH/blob/master/SPLASH_build.R
SPLASH_extendor_classification.Rhttps://github.com/refresh-bio/SPLASH/blob/master/SPLASH_extendor_classification.R
SPLASH_extendor_classification.Rhttps://github.com/refresh-bio/SPLASH/blob/master/SPLASH_extendor_classification.R
SPLASH_splicing_analysis_notebook.Rmdhttps://github.com/refresh-bio/SPLASH/blob/master/SPLASH_splicing_analysis_notebook.Rmd
SPLASH_splicing_analysis_notebook.Rmdhttps://github.com/refresh-bio/SPLASH/blob/master/SPLASH_splicing_analysis_notebook.Rmd
build_docker.pyhttps://github.com/refresh-bio/SPLASH/blob/master/build_docker.py
build_docker.pyhttps://github.com/refresh-bio/SPLASH/blob/master/build_docker.py
build_release.pyhttps://github.com/refresh-bio/SPLASH/blob/master/build_release.py
build_release.pyhttps://github.com/refresh-bio/SPLASH/blob/master/build_release.py
download_kmc.pyhttps://github.com/refresh-bio/SPLASH/blob/master/download_kmc.py
download_kmc.pyhttps://github.com/refresh-bio/SPLASH/blob/master/download_kmc.py
refresh.mkhttps://github.com/refresh-bio/SPLASH/blob/master/refresh.mk
refresh.mkhttps://github.com/refresh-bio/SPLASH/blob/master/refresh.mk
READMEhttps://github.com/refresh-bio/SPLASH
GPL-3.0 licensehttps://github.com/refresh-bio/SPLASH
https://github.com/refresh-bio/SPLASH#splash-2
https://github.com/refresh-bio/SPLASH/releases
https://anaconda.org/bioconda/splash
https://github.com/refresh-bio/SPLASH#introduction
SPLASHhttps://github.com/salzman-lab/nomad/
https://github.com/refresh-bio/SPLASH#how-does-it-work
https://private-user-images.githubusercontent.com/9378882/246379742-8210fee0-c877-4374-9938-e3c01ea69e76.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.cOwaAevVWe7xmv6jOMkRIoINgqj9Y-Q5rj0bxfT_oQ8
https://github.com/refresh-bio/SPLASH#sc-splash
https://private-user-images.githubusercontent.com/9378882/414650664-30bb826a-7f4c-4327-b0fe-07163027be20.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.SuIO5W430ftezPy8uNo1mBGYltEfPDiKfBqYMTEN0Fs
https://github.com/refresh-bio/SPLASH#compactors
https://private-user-images.githubusercontent.com/14868954/383721227-49ee9aaf-54b8-4383-80be-3d225862e8bf.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.uFvkfwVGC_gD136d7Jj9q2-xZhLrYWfsKHLzlOs0SXc
https://github.com/refresh-bio/SPLASH#installation-usage-example
Wiki pagehttps://github.com/refresh-bio/SPLASH/wiki
https://github.com/refresh-bio/SPLASH#references
Scalable and unsupervised discovery from raw sequencing reads using SPLASH2https://www.nature.com/articles/s41587-024-02381-2
sc-SPLASH provides ultra-efficient reference-free discovery in barcoded single-cell sequencinghttps://doi.org/10.1101/2024.12.24.630263
SPLASH: A statistical, reference-free genomic algorithm unifies biological discoveryhttps://www.cell.com/cell/fulltext/S0092-8674(23)01179-0
OASIS: An interpretable, finite-sample valid alternative to Pearson’s X2 for scientific discoveryhttps://www.pnas.org/doi/10.1073/pnas.2304671121
Ultra-efficient, unified discovery from microbial sequencing with SPLASH and precise statistical assemblyhttps://www.biorxiv.org/content/10.1101/2024.01.18.576133v1.full
Readme https://github.com/refresh-bio/SPLASH#readme-ov-file
GPL-3.0 license https://github.com/refresh-bio/SPLASH#GPL-3.0-1-ov-file
Please reload this pagehttps://github.com/refresh-bio/SPLASH
Activityhttps://github.com/refresh-bio/SPLASH/activity
Custom propertieshttps://github.com/refresh-bio/SPLASH/custom-properties
14 forkshttps://github.com/refresh-bio/SPLASH/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Frefresh-bio%2FSPLASH&report=refresh-bio+%28user%29
Releases 11https://github.com/refresh-bio/SPLASH/releases
v2.11.9 Latest Sep 4, 2025 https://github.com/refresh-bio/SPLASH/releases/tag/v2.11.9
+ 10 releaseshttps://github.com/refresh-bio/SPLASH/releases
Packages 0https://github.com/orgs/refresh-bio/packages?repo_name=SPLASH
Please reload this pagehttps://github.com/refresh-bio/SPLASH
Contributorshttps://github.com/refresh-bio/SPLASH/graphs/contributors
Please reload this pagehttps://github.com/refresh-bio/SPLASH
C++ 78.2% https://github.com/refresh-bio/SPLASH/search?l=c%2B%2B
Python 6.9% https://github.com/refresh-bio/SPLASH/search?l=python
C 5.7% https://github.com/refresh-bio/SPLASH/search?l=c
Jupyter Notebook 5.4% https://github.com/refresh-bio/SPLASH/search?l=jupyter-notebook
R 2.1% https://github.com/refresh-bio/SPLASH/search?l=r
Makefile 1.7% https://github.com/refresh-bio/SPLASH/search?l=makefile
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.