René's URL Explorer Experiment


Title: GitHub - rec3141/dada2 at gpu-python · GitHub

Open Graph Title: GitHub - rec3141/dada2 at gpu-python

X Title: GitHub - rec3141/dada2 at gpu-python

Description: Accurate sample inference from amplicon data with single nucleotide resolution - GitHub - rec3141/dada2 at gpu-python

Open Graph Description: Accurate sample inference from amplicon data with single nucleotide resolution - rec3141/dada2

X Description: Accurate sample inference from amplicon data with single nucleotide resolution - rec3141/dada2

Opengraph URL: https://github.com/rec3141/dada2/tree/gpu-python

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository/tree/*name(/*path)
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:3272b3d0-c5ef-41cb-fad9-7b19676aa215
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idE4CE:3D95DA:17A09E:202D75:6A4C2235
html-safe-noncecb50a0b50ede0f3fd581a4f083d17fb4f9cacf3038de679f3528952a1167d193
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJFNENFOjNEOTVEQToxN0EwOUU6MjAyRDc1OjZBNEMyMjM1IiwidmlzaXRvcl9pZCI6IjY4MzQxNTY5NjI1MjA1MDY5MzMiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmacc88fa64d532fcc275d139365d3f9319d1b0eefe214c024ae30c2fef282da2ead
hovercard-subject-tagrepository:1194037637
github-keyboard-shortcutsrepository,source-code,file-tree,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location///files/disambiguate
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/rec3141/dada2/tree/gpu-python
twitter:imagehttps://opengraph.githubassets.com/32c96dd9812b79155fb51c87f1573cd42b6427db76a431d69b423ab02e54da95/rec3141/dada2
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/32c96dd9812b79155fb51c87f1573cd42b6427db76a431d69b423ab02e54da95/rec3141/dada2
og:image:altAccurate sample inference from amplicon data with single nucleotide resolution - rec3141/dada2
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None1b6b16d04026f131a36d57e3b01d0f4d26a51800edf48bf5ed0256e0ac905511
turbo-cache-controlno-cache
go-importgithub.com/rec3141/dada2 git https://github.com/rec3141/dada2.git
octolytics-dimension-user_id1102883
octolytics-dimension-user_loginrec3141
octolytics-dimension-repository_id1194037637
octolytics-dimension-repository_nworec3141/dada2
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id28114218
octolytics-dimension-repository_parent_nwobenjjneb/dada2
octolytics-dimension-repository_network_root_id28114218
octolytics-dimension-repository_network_root_nwobenjjneb/dada2
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasef95fb36c72adc940ff991c03531114b2245658d0
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/rec3141/dada2/tree/gpu-python#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Frec3141%2Fdada2%2Ftree%2Fgpu-python
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Frec3141%2Fdada2%2Ftree%2Fgpu-python
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Ffiles%2Fdisambiguate&source=header-repo&source_repo=rec3141%2Fdada2
Reloadhttps://github.com/rec3141/dada2/tree/gpu-python
Reloadhttps://github.com/rec3141/dada2/tree/gpu-python
Reloadhttps://github.com/rec3141/dada2/tree/gpu-python
rec3141 https://github.com/rec3141
dada2https://github.com/rec3141/dada2
benjjneb/dada2https://github.com/benjjneb/dada2
Notifications https://github.com/login?return_to=%2Frec3141%2Fdada2
Fork 0 https://github.com/login?return_to=%2Frec3141%2Fdada2
Star 0 https://github.com/login?return_to=%2Frec3141%2Fdada2
Code https://github.com/rec3141/dada2/tree/gpu-python
Issues 1 https://github.com/rec3141/dada2/issues
Pull requests 0 https://github.com/rec3141/dada2/pulls
Actions https://github.com/rec3141/dada2/actions
Projects https://github.com/rec3141/dada2/projects
Security and quality 0 https://github.com/rec3141/dada2/security
Insights https://github.com/rec3141/dada2/pulse
Code https://github.com/rec3141/dada2/tree/gpu-python
Issues https://github.com/rec3141/dada2/issues
Pull requests https://github.com/rec3141/dada2/pulls
Actions https://github.com/rec3141/dada2/actions
Projects https://github.com/rec3141/dada2/projects
Security and quality https://github.com/rec3141/dada2/security
Insights https://github.com/rec3141/dada2/pulse
https://github.com/rec3141/dada2
Brancheshttps://github.com/rec3141/dada2/branches
Tagshttps://github.com/rec3141/dada2/tags
https://github.com/rec3141/dada2/branches
https://github.com/rec3141/dada2/tags
837 Commitshttps://github.com/rec3141/dada2/commits/gpu-python/
https://github.com/rec3141/dada2/commits/gpu-python/
Rhttps://github.com/rec3141/dada2/tree/gpu-python/R
Rhttps://github.com/rec3141/dada2/tree/gpu-python/R
datahttps://github.com/rec3141/dada2/tree/gpu-python/data
datahttps://github.com/rec3141/dada2/tree/gpu-python/data
insthttps://github.com/rec3141/dada2/tree/gpu-python/inst
insthttps://github.com/rec3141/dada2/tree/gpu-python/inst
manhttps://github.com/rec3141/dada2/tree/gpu-python/man
manhttps://github.com/rec3141/dada2/tree/gpu-python/man
pyhttps://github.com/rec3141/dada2/tree/gpu-python/py
pyhttps://github.com/rec3141/dada2/tree/gpu-python/py
srchttps://github.com/rec3141/dada2/tree/gpu-python/src
srchttps://github.com/rec3141/dada2/tree/gpu-python/src
testshttps://github.com/rec3141/dada2/tree/gpu-python/tests
testshttps://github.com/rec3141/dada2/tree/gpu-python/tests
vignetteshttps://github.com/rec3141/dada2/tree/gpu-python/vignettes
vignetteshttps://github.com/rec3141/dada2/tree/gpu-python/vignettes
.Rbuildignorehttps://github.com/rec3141/dada2/blob/gpu-python/.Rbuildignore
.Rbuildignorehttps://github.com/rec3141/dada2/blob/gpu-python/.Rbuildignore
.gitignorehttps://github.com/rec3141/dada2/blob/gpu-python/.gitignore
.gitignorehttps://github.com/rec3141/dada2/blob/gpu-python/.gitignore
.travis.ymlhttps://github.com/rec3141/dada2/blob/gpu-python/.travis.yml
.travis.ymlhttps://github.com/rec3141/dada2/blob/gpu-python/.travis.yml
DESCRIPTIONhttps://github.com/rec3141/dada2/blob/gpu-python/DESCRIPTION
DESCRIPTIONhttps://github.com/rec3141/dada2/blob/gpu-python/DESCRIPTION
DEV_SETUP.mdhttps://github.com/rec3141/dada2/blob/gpu-python/DEV_SETUP.md
DEV_SETUP.mdhttps://github.com/rec3141/dada2/blob/gpu-python/DEV_SETUP.md
LICENSEhttps://github.com/rec3141/dada2/blob/gpu-python/LICENSE
LICENSEhttps://github.com/rec3141/dada2/blob/gpu-python/LICENSE
Makefilehttps://github.com/rec3141/dada2/blob/gpu-python/Makefile
Makefilehttps://github.com/rec3141/dada2/blob/gpu-python/Makefile
NAMESPACEhttps://github.com/rec3141/dada2/blob/gpu-python/NAMESPACE
NAMESPACEhttps://github.com/rec3141/dada2/blob/gpu-python/NAMESPACE
NEWShttps://github.com/rec3141/dada2/blob/gpu-python/NEWS
NEWShttps://github.com/rec3141/dada2/blob/gpu-python/NEWS
README.mdhttps://github.com/rec3141/dada2/blob/gpu-python/README.md
README.mdhttps://github.com/rec3141/dada2/blob/gpu-python/README.md
cleanuphttps://github.com/rec3141/dada2/blob/gpu-python/cleanup
cleanuphttps://github.com/rec3141/dada2/blob/gpu-python/cleanup
configurehttps://github.com/rec3141/dada2/blob/gpu-python/configure
configurehttps://github.com/rec3141/dada2/blob/gpu-python/configure
environment.ymlhttps://github.com/rec3141/dada2/blob/gpu-python/environment.yml
environment.ymlhttps://github.com/rec3141/dada2/blob/gpu-python/environment.yml
READMEhttps://github.com/rec3141/dada2/tree/gpu-python
Licensehttps://github.com/rec3141/dada2/tree/gpu-python
https://github.com/benjjneb/dada2/actions/workflows/pages/pages-build-deployment
https://github.com/rec3141/dada2/tree/gpu-python#dada2
the DADA2 websitehttps://benjjneb.github.io/dada2/index.html
https://github.com/rec3141/dada2/tree/gpu-python#installation
installation from source instructionshttps://benjjneb.github.io/dada2/dada-installation.html
https://github.com/rec3141/dada2/tree/gpu-python#documentation
tutorial walkthrough of the DADA2 pipeline on paired end Illumina Miseq datahttps://benjjneb.github.io/dada2/tutorial.html
dada2 R package manualhttps://www.bioconductor.org/packages/3.6/bioc/manuals/dada2/man/dada2.pdf
the DADA2 front pagehttp://benjjneb.github.io/dada2/
https://github.com/rec3141/dada2/tree/gpu-python#dada2-articles
DADA2: High resolution sample inference from Illumina amplicon data. Nature Methods, 2016.http://dx.doi.org/10.1038/nmeth.3869
(Open Access link.)http://rdcu.be/ipGh
Bioconductor workflow for microbiome data analysis: from raw reads to community analyses. F1000 Research, 2016.https://f1000research.com/articles/5-1492
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis. ISMEJ, 2017.http://dx.doi.org/10.1038/ismej.2017.119
High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution. Nucleic Acids Research, 2019.http://dx.doi.org/10.1093/nar/gkz569
https://github.com/rec3141/dada2/tree/gpu-python#other-resources
https://github.com/benjjneb/dada2/issueshttps://github.com/benjjneb/dada2/issues
the issue trackerhttps://github.com/benjjneb/dada2/issues
benjjneb.github.io/dada2/http://benjjneb.github.io/dada2/
Readme https://github.com/rec3141/dada2/tree/gpu-python#readme-ov-file
LGPL-3.0 license https://github.com/rec3141/dada2/blob/master/LICENSE
Please reload this pagehttps://github.com/rec3141/dada2/tree/gpu-python
Activityhttps://github.com/rec3141/dada2/activity
0 forkshttps://github.com/rec3141/dada2/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Frec3141%2Fdada2&report=rec3141+%28user%29
Releaseshttps://github.com/rec3141/dada2/releases
15 tags https://github.com/rec3141/dada2/tags
Packages 0https://github.com/users/rec3141/packages?repo_name=dada2
Please reload this pagehttps://github.com/rec3141/dada2/tree/gpu-python
Contributorshttps://github.com/rec3141/dada2/graphs/contributors
Please reload this pagehttps://github.com/rec3141/dada2/tree/gpu-python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.