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Title: History for src/RcppExports.cpp - rec3141/dada2 · GitHub

Open Graph Title: History for src/RcppExports.cpp - rec3141/dada2

X Title: History for src/RcppExports.cpp - rec3141/dada2

Description: Accurate sample inference from amplicon data with single nucleotide resolution - History for src/RcppExports.cpp - rec3141/dada2

Open Graph Description: Accurate sample inference from amplicon data with single nucleotide resolution - History for src/RcppExports.cpp - rec3141/dada2

X Description: Accurate sample inference from amplicon data with single nucleotide resolution - History for src/RcppExports.cpp - rec3141/dada2

Opengraph URL: https://github.com/rec3141/dada2

X: @github

direct link

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Links:

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Reloadhttps://github.com/rec3141/dada2/commits/gpu-python/src/RcppExports.cpp
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Version bumphttps://github.com/rec3141/dada2/commit/da9419bc3cce3bd313e46052c2bece9775df18ef
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Working modifiable correctionhttps://github.com/rec3141/dada2/commit/046537f10184cee2d5f94a7dcf805c001210f04f
046537fhttps://github.com/rec3141/dada2/commit/046537f10184cee2d5f94a7dcf805c001210f04f
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Greedy behavior flaggedhttps://github.com/rec3141/dada2/commit/dad94caed501e3c0c561b546edd614c4377451d2
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Initial greedy-isa commithttps://github.com/rec3141/dada2/commit/559a420e36d3356a959cae1eaedcaadb3b101642
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Move to match/mismatch onlyhttps://github.com/rec3141/dada2/commit/25ba6f152bb38588d980d43cbb46895be68856bd
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Additional distance metrics exposed to R for diagnostic purposeshttps://github.com/rec3141/dada2/commit/92e4c8d2460ed4bf5fa3f745a5f6fa2dbd9865c0
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Contiguous kmers, and uint8_t kmer implementationhttps://github.com/rec3141/dada2/commit/8fcfea1538f9afb050c0a7636a9dccb9b691d4fd
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https://github.com/rec3141/dada2/blob/2c782796e723c11b8f3991ad870a02fd7cba60fb/src/RcppExports.cpp
https://github.com/rec3141/dada2/tree/2c782796e723c11b8f3991ad870a02fd7cba60fb
Chimera cleanup, Version bumphttps://github.com/rec3141/dada2/commit/5ca692af66c245739903d982fec13f6ca891283d
5ca692ahttps://github.com/rec3141/dada2/commit/5ca692af66c245739903d982fec13f6ca891283d
https://github.com/rec3141/dada2/blob/5ca692af66c245739903d982fec13f6ca891283d/src/RcppExports.cpp
https://github.com/rec3141/dada2/tree/5ca692af66c245739903d982fec13f6ca891283d
Working multithreading for consensus chimera removalhttps://github.com/rec3141/dada2/commit/a81805100b6ddd085e216aed8dd61a1f0af63b5c
a818051https://github.com/rec3141/dada2/commit/a81805100b6ddd085e216aed8dd61a1f0af63b5c
https://github.com/rec3141/dada2/blob/a81805100b6ddd085e216aed8dd61a1f0af63b5c/src/RcppExports.cpp
https://github.com/rec3141/dada2/tree/a81805100b6ddd085e216aed8dd61a1f0af63b5c
Added trimOverhang option to mergePairshttps://github.com/rec3141/dada2/commit/d0fb14a11e04d61f52727f595a9139c44e62e51e
d0fb14ahttps://github.com/rec3141/dada2/commit/d0fb14a11e04d61f52727f595a9139c44e62e51e
https://github.com/rec3141/dada2/blob/d0fb14a11e04d61f52727f595a9139c44e62e51e/src/RcppExports.cpp
https://github.com/rec3141/dada2/tree/d0fb14a11e04d61f52727f595a9139c44e62e51e
Bug fixhttps://github.com/rec3141/dada2/commit/7c61f6b938c9bc225c40788e6d8892e1ba3128d5
7c61f6bhttps://github.com/rec3141/dada2/commit/7c61f6b938c9bc225c40788e6d8892e1ba3128d5
https://github.com/rec3141/dada2/blob/7c61f6b938c9bc225c40788e6d8892e1ba3128d5/src/RcppExports.cpp
https://github.com/rec3141/dada2/tree/7c61f6b938c9bc225c40788e6d8892e1ba3128d5
Faster filtering. About 35% faster for common settings by not checking minQ of redundant, and by C-izing the maxEE check.https://github.com/rec3141/dada2/commit/d30c2e00c4bd952f0d718431ea392a75306e962e
d30c2e0https://github.com/rec3141/dada2/commit/d30c2e00c4bd952f0d718431ea392a75306e962e
https://github.com/rec3141/dada2/blob/d30c2e00c4bd952f0d718431ea392a75306e962e/src/RcppExports.cpp
https://github.com/rec3141/dada2/tree/d30c2e00c4bd952f0d718431ea392a75306e962e
NEWS and C-side minlen checkhttps://github.com/rec3141/dada2/commit/2d9fe6e0d3781897240c663c11642715e59432b5
2d9fe6ehttps://github.com/rec3141/dada2/commit/2d9fe6e0d3781897240c663c11642715e59432b5
https://github.com/rec3141/dada2/blob/2d9fe6e0d3781897240c663c11642715e59432b5/src/RcppExports.cpp
https://github.com/rec3141/dada2/tree/2d9fe6e0d3781897240c663c11642715e59432b5
Fixed minLen handling in fastqFilterhttps://github.com/rec3141/dada2/commit/903cf3d307673bd88f0b0460ba9aed51290e369e
903cf3dhttps://github.com/rec3141/dada2/commit/903cf3d307673bd88f0b0460ba9aed51290e369e
https://github.com/rec3141/dada2/blob/903cf3d307673bd88f0b0460ba9aed51290e369e/src/RcppExports.cpp
https://github.com/rec3141/dada2/tree/903cf3d307673bd88f0b0460ba9aed51290e369e
Variable sequence lengths allowed through to dada callhttps://github.com/rec3141/dada2/commit/98271a3781fc2d054c75f24d45e316dd373a3ea4
98271a3https://github.com/rec3141/dada2/commit/98271a3781fc2d054c75f24d45e316dd373a3ea4
https://github.com/rec3141/dada2/blob/98271a3781fc2d054c75f24d45e316dd373a3ea4/src/RcppExports.cpp
https://github.com/rec3141/dada2/tree/98271a3781fc2d054c75f24d45e316dd373a3ea4
tryRC added to assignTaxonomyhttps://github.com/rec3141/dada2/commit/83d6fa8a7bd494789d94c31678f314e29926c9c8
83d6fa8https://github.com/rec3141/dada2/commit/83d6fa8a7bd494789d94c31678f314e29926c9c8
https://github.com/rec3141/dada2/blob/83d6fa8a7bd494789d94c31678f314e29926c9c8/src/RcppExports.cpp
https://github.com/rec3141/dada2/tree/83d6fa8a7bd494789d94c31678f314e29926c9c8
MT assignTaxonomy bug fix and mem cleanuphttps://github.com/rec3141/dada2/commit/6677a096d4a5219f800b962a6bef5b7320d97eb0
6677a09https://github.com/rec3141/dada2/commit/6677a096d4a5219f800b962a6bef5b7320d97eb0
https://github.com/rec3141/dada2/blob/6677a096d4a5219f800b962a6bef5b7320d97eb0/src/RcppExports.cpp
https://github.com/rec3141/dada2/tree/6677a096d4a5219f800b962a6bef5b7320d97eb0
Nexthttps://github.com/rec3141/dada2/commits/gpu-python/src/RcppExports.cpp?after=85e5437b6519f60997bccd5491b3756a5fa5692a+34
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