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Title: making numba optional by eriknw · Pull Request #423 · python-graphblas/python-graphblas · GitHub

Open Graph Title: making numba optional by eriknw · Pull Request #423 · python-graphblas/python-graphblas

X Title: making numba optional by eriknw · Pull Request #423 · python-graphblas/python-graphblas

Description: I started poking around to see what it would take to allow numba to be optional. Closes #415. May also address #324. This is a work in progress and can probably be cleaned up. This also tests again...

Open Graph Description: I started poking around to see what it would take to allow numba to be optional. Closes #415. May also address #324. This is a work in progress and can probably be cleaned up. This also tests again...

X Description: I started poking around to see what it would take to allow numba to be optional. Closes #415. May also address #324. This is a work in progress and can probably be cleaned up. This also tests again...

Opengraph URL: https://github.com/python-graphblas/python-graphblas/pull/423

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og:image:altI started poking around to see what it would take to allow numba to be optional. Closes #415. May also address #324. This is a work in progress and can probably be cleaned up. This also tests again...
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eriknw:no_numbahttps://github.com/eriknw/grblas/tree/no_numba
making numba optional https://github.com/python-graphblas/python-graphblas/pull/423#top
eriknwhttps://github.com/eriknw
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Apr 3, 2023https://github.com/python-graphblas/python-graphblas/pull/423#issue-1652861822
Please reload this pagehttps://github.com/python-graphblas/python-graphblas/pull/423
#415https://github.com/python-graphblas/python-graphblas/issues/415
#324https://github.com/python-graphblas/python-graphblas/issues/324
Please reload this pagehttps://github.com/python-graphblas/python-graphblas/pull/423
https://github.com/eriknw
WIP: making numba optionalhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/8243013779ec3f27f4a68b414fda004f82014141
8243013https://github.com/python-graphblas/python-graphblas/pull/423/commits/8243013779ec3f27f4a68b414fda004f82014141
https://github.com/eriknw
eriknwhttps://github.com/eriknw
Apr 3, 2023 https://github.com/python-graphblas/python-graphblas/pull/423#pullrequestreview-1369883443
View reviewed changes https://github.com/python-graphblas/python-graphblas/pull/423/files/8243013779ec3f27f4a68b414fda004f82014141
graphblas/io.pyhttps://github.com/python-graphblas/python-graphblas/pull/423/files/8243013779ec3f27f4a68b414fda004f82014141#diff-a6c7285f163a239cc3a2596b1627c3446bdffa4b601f8f8512e722c73cddc505
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3f4a3eehttps://github.com/python-graphblas/python-graphblas/commit/3f4a3ee007823c607525277ea368d16080497a71
Please reload this pagehttps://github.com/python-graphblas/python-graphblas/pull/423
eriknwhttps://github.com/eriknw
April 3, 2023 19:57https://github.com/python-graphblas/python-graphblas/pull/423#commits-pushed-a987553
https://github.com/eriknw
No numba on Python 3.11; use condahttps://github.com/python-graphblas/python-graphblas/pull/423/commits/a987553d6e7c7665d263d2f1a82b4afac6fce999
a987553https://github.com/python-graphblas/python-graphblas/pull/423/commits/a987553d6e7c7665d263d2f1a82b4afac6fce999
https://github.com/eriknw
skip notebooks and try mambahttps://github.com/python-graphblas/python-graphblas/pull/423/commits/d31b3decb03cdfa118064e7703e87b3056538ced
d31b3dehttps://github.com/python-graphblas/python-graphblas/pull/423/commits/d31b3decb03cdfa118064e7703e87b3056538ced
https://github.com/eriknw
Only test pypyhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/9c6bb515368c71db5d440ae30c5c4b7ce7fba642
9c6bb51https://github.com/python-graphblas/python-graphblas/pull/423/commits/9c6bb515368c71db5d440ae30c5c4b7ce7fba642
https://github.com/eriknw
bump pandas 2.0.0https://github.com/python-graphblas/python-graphblas/pull/423/commits/02d261cf34b1486261ad2fd885cce3d8f4029a9b
02d261chttps://github.com/python-graphblas/python-graphblas/pull/423/commits/02d261cf34b1486261ad2fd885cce3d8f4029a9b
https://github.com/eriknw
eriknwhttps://github.com/eriknw
April 4, 2023 14:40https://github.com/python-graphblas/python-graphblas/pull/423#event-8925391348
https://github.com/eriknw
Don't test against pypy in CIhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/61f56601b03e2262a9fadca9be9087932cf52c33
61f5660https://github.com/python-graphblas/python-graphblas/pull/423/commits/61f56601b03e2262a9fadca9be9087932cf52c33
https://github.com/eriknw
eriknwhttps://github.com/eriknw
Apr 4, 2023https://github.com/python-graphblas/python-graphblas/pull/423#issuecomment-1496138319
herehttps://github.com/python-graphblas/python-graphblas/actions/runs/4603607378/jobs/8133767261
Please reload this pagehttps://github.com/python-graphblas/python-graphblas/pull/423
eriknwhttps://github.com/eriknw
April 4, 2023 11:14https://github.com/python-graphblas/python-graphblas/pull/423#commits-pushed-71af5e7
https://github.com/eriknw
Update classifiers (we don't officially support PyPy)https://github.com/python-graphblas/python-graphblas/pull/423/commits/71af5e776895d08ac37ab35108f93fbca0cfa409
71af5e7https://github.com/python-graphblas/python-graphblas/pull/423/commits/71af5e776895d08ac37ab35108f93fbca0cfa409
https://github.com/eriknw
expand optional dependencieshttps://github.com/python-graphblas/python-graphblas/pull/423/commits/6200a9f4ec359ca99902d881cbea9ce25c4cab95
6200a9fhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/6200a9f4ec359ca99902d881cbea9ce25c4cab95
https://github.com/eriknw
networkx 3.1https://github.com/python-graphblas/python-graphblas/pull/423/commits/d4ae2080a435d1f59b30e51a58f8b2540b98631f
d4ae208https://github.com/python-graphblas/python-graphblas/pull/423/commits/d4ae2080a435d1f59b30e51a58f8b2540b98631f
https://github.com/eriknw
simplify/combine depshttps://github.com/python-graphblas/python-graphblas/pull/423/commits/21ddb7fadccf909d06125ed014ffd943e4132ec3
21ddb7fhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/21ddb7fadccf909d06125ed014ffd943e4132ec3
https://github.com/eriknw
Make suitesparse_graphblas optional (in the future); don't install nu…https://github.com/python-graphblas/python-graphblas/pull/423/commits/3af869ca6af7506c751e9484f27f12c36139cce0
3af869chttps://github.com/python-graphblas/python-graphblas/pull/423/commits/3af869ca6af7506c751e9484f27f12c36139cce0
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Test numba 0.57.0rc1https://github.com/python-graphblas/python-graphblas/pull/423/commits/5cdaa317d63273e7e146b9ea96c5a3a6406cb44c
5cdaa31https://github.com/python-graphblas/python-graphblas/pull/423/commits/5cdaa317d63273e7e146b9ea96c5a3a6406cb44c
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oopshttps://github.com/python-graphblas/python-graphblas/pull/423/commits/78c26669677d5e9d35a56c7ceee0acae0615e649
78c2666https://github.com/python-graphblas/python-graphblas/pull/423/commits/78c26669677d5e9d35a56c7ceee0acae0615e649
https://github.com/eriknw
Ignore deprecation warning raised by awkward in Python 3.11https://github.com/python-graphblas/python-graphblas/pull/423/commits/ce0a667efda2de1ab0b452cfaaeffb1c63ffe1c0
ce0a667https://github.com/python-graphblas/python-graphblas/pull/423/commits/ce0a667efda2de1ab0b452cfaaeffb1c63ffe1c0
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try to ignore warning from sparsehttps://github.com/python-graphblas/python-graphblas/pull/423/commits/0b6dcaf20ceae830489ad523410193d12ef1bb10
0b6dcafhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/0b6dcaf20ceae830489ad523410193d12ef1bb10
https://github.com/eriknw
drop sparse 0.12 (which is really old and annoying to support)https://github.com/python-graphblas/python-graphblas/pull/423/commits/67a5b716df10b31f28bd12bbf7f545efadd1da15
67a5b71https://github.com/python-graphblas/python-graphblas/pull/423/commits/67a5b716df10b31f28bd12bbf7f545efadd1da15
https://github.com/eriknw
sre_constants also deprecatedhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/0f66e652f5232a762d6191abc59d9716d15dac13
0f66e65https://github.com/python-graphblas/python-graphblas/pull/423/commits/0f66e652f5232a762d6191abc59d9716d15dac13
https://github.com/eriknw
eriknwhttps://github.com/eriknw
Apr 7, 2023https://github.com/python-graphblas/python-graphblas/pull/423#issuecomment-1500506033
Please reload this pagehttps://github.com/python-graphblas/python-graphblas/pull/423
https://github.com/eriknw
eriknwhttps://github.com/eriknw
Apr 7, 2023 https://github.com/python-graphblas/python-graphblas/pull/423#ref-pullrequest-1637757138
Test numba 0.57dev and numpy 1.24 #414 https://github.com/python-graphblas/python-graphblas/pull/414
https://github.com/eriknw
clean uphttps://github.com/python-graphblas/python-graphblas/pull/423/commits/fd82c1227d47f77e39063db5a3a04df60f15e4df
fd82c12https://github.com/python-graphblas/python-graphblas/pull/423/commits/fd82c1227d47f77e39063db5a3a04df60f15e4df
https://github.com/eriknw
eriknwhttps://github.com/eriknw
Apr 7, 2023 https://github.com/python-graphblas/python-graphblas/pull/423#pullrequestreview-1376513746
View reviewed changes https://github.com/python-graphblas/python-graphblas/pull/423/files/fd82c1227d47f77e39063db5a3a04df60f15e4df
graphblas/core/operator/binary.pyhttps://github.com/python-graphblas/python-graphblas/pull/423/files/fd82c1227d47f77e39063db5a3a04df60f15e4df#diff-f8bdb572731c6f5b5915787678b6253c933eddcbe39ef8cd6fe8cd6239e6572a
Please reload this pagehttps://github.com/python-graphblas/python-graphblas/pull/423
eriknwhttps://github.com/eriknw
April 8, 2023 20:15https://github.com/python-graphblas/python-graphblas/pull/423#commits-pushed-ccb1b30
https://github.com/eriknw
shouldhave make tests a little more clear (I think)https://github.com/python-graphblas/python-graphblas/pull/423/commits/ccb1b30ae6322712138826c4e150d99dc70ce964
ccb1b30https://github.com/python-graphblas/python-graphblas/pull/423/commits/ccb1b30ae6322712138826c4e150d99dc70ce964
https://github.com/eriknw
Recipes for L1norm and Linfnorm aggregatorshttps://github.com/python-graphblas/python-graphblas/pull/423/commits/e1ed1f0ca4c7dd32de996199b69ddc05b0c33ad2
e1ed1f0https://github.com/python-graphblas/python-graphblas/pull/423/commits/e1ed1f0ca4c7dd32de996199b69ddc05b0c33ad2
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Better error message for default operators that are UDFshttps://github.com/python-graphblas/python-graphblas/pull/423/commits/a074aa0677bf1c81791c2a9321319788e64e2bbf
a074aa0https://github.com/python-graphblas/python-graphblas/pull/423/commits/a074aa0677bf1c81791c2a9321319788e64e2bbf
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eriknwhttps://github.com/eriknw
April 9, 2023 19:20https://github.com/python-graphblas/python-graphblas/pull/423#event-8959550057
https://github.com/eriknw
eriknwhttps://github.com/eriknw
Apr 9, 2023https://github.com/python-graphblas/python-graphblas/pull/423#issuecomment-1501196906
Please reload this pagehttps://github.com/python-graphblas/python-graphblas/pull/423
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Try thishttps://github.com/python-graphblas/python-graphblas/pull/423/commits/de2c81f0f3a6713ff77134022b4ca56405c9c7ce
de2c81fhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/de2c81f0f3a6713ff77134022b4ca56405c9c7ce
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jim22khttps://github.com/jim22k
Apr 12, 2023 https://github.com/python-graphblas/python-graphblas/pull/423#pullrequestreview-1381464267
View reviewed changes https://github.com/python-graphblas/python-graphblas/pull/423/files/de2c81f0f3a6713ff77134022b4ca56405c9c7ce
eriknwhttps://github.com/eriknw
April 12, 2023 17:45https://github.com/python-graphblas/python-graphblas/pull/423#commits-pushed-837796c
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Stress test numba 0.57.0rc1 on Windowshttps://github.com/python-graphblas/python-graphblas/pull/423/commits/837796c97c7e075d974c483c7a45e1b6341b28e7
837796chttps://github.com/python-graphblas/python-graphblas/pull/423/commits/837796c97c7e075d974c483c7a45e1b6341b28e7
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But which unaryop is causing this?!https://github.com/python-graphblas/python-graphblas/pull/423/commits/571b27aa5a3905cfa0bb5a62078c3ca4ad14d316
571b27ahttps://github.com/python-graphblas/python-graphblas/pull/423/commits/571b27aa5a3905cfa0bb5a62078c3ca4ad14d316
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more debug printhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/30f5532b75e434829383506314b6b40fa60882aa
30f5532https://github.com/python-graphblas/python-graphblas/pull/423/commits/30f5532b75e434829383506314b6b40fa60882aa
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Always test with numpy 1.24https://github.com/python-graphblas/python-graphblas/pull/423/commits/3f4a3ee007823c607525277ea368d16080497a71
3f4a3eehttps://github.com/python-graphblas/python-graphblas/pull/423/commits/3f4a3ee007823c607525277ea368d16080497a71
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Don't map numpyhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/050d709536a6f93ccdd336a60110fbd51330e979
050d709https://github.com/python-graphblas/python-graphblas/pull/423/commits/050d709536a6f93ccdd336a60110fbd51330e979
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more brutal testinghttps://github.com/python-graphblas/python-graphblas/pull/423/commits/73205e8e19c9fc27bacb0f94fe28e1a18460524d
73205e8https://github.com/python-graphblas/python-graphblas/pull/423/commits/73205e8e19c9fc27bacb0f94fe28e1a18460524d
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forgot a -shttps://github.com/python-graphblas/python-graphblas/pull/423/commits/cc08a34a10541878f2518b5f97bc46db603f641c
cc08a34https://github.com/python-graphblas/python-graphblas/pull/423/commits/cc08a34a10541878f2518b5f97bc46db603f641c
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shuffle attrshttps://github.com/python-graphblas/python-graphblas/pull/423/commits/4c7441b7251783bf87bec90986fffc143ad8ca62
4c7441bhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/4c7441b7251783bf87bec90986fffc143ad8ca62
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where exactly does it happen? also, only wheels for psghttps://github.com/python-graphblas/python-graphblas/pull/423/commits/4b0c3cbbc30ae9794820c4b9119052c591fcfa6b
4b0c3cbhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/4b0c3cbbc30ae9794820c4b9119052c591fcfa6b
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relax numpy versionhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/bb35f98178238b4a2e5b7c5f2130d1dec327e5e6
bb35f98https://github.com/python-graphblas/python-graphblas/pull/423/commits/bb35f98178238b4a2e5b7c5f2130d1dec327e5e6
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exp2 reliably fails; what else?https://github.com/python-graphblas/python-graphblas/pull/423/commits/f4645cea815cfd9a67592eadbc0bcbadc26cf14c
f4645cehttps://github.com/python-graphblas/python-graphblas/pull/423/commits/f4645cea815cfd9a67592eadbc0bcbadc26cf14c
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testhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/e7422a5e428a2d98aaebdefbc2c728ca6d1ca4cc
e7422a5https://github.com/python-graphblas/python-graphblas/pull/423/commits/e7422a5e428a2d98aaebdefbc2c728ca6d1ca4cc
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Try other sources of psghttps://github.com/python-graphblas/python-graphblas/pull/423/commits/92c8df5d59c0de2bdb1fcee12dd3a7bcff84e39d
92c8df5https://github.com/python-graphblas/python-graphblas/pull/423/commits/92c8df5d59c0de2bdb1fcee12dd3a7bcff84e39d
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undo testing numba on windowshttps://github.com/python-graphblas/python-graphblas/pull/423/commits/757ea240167f112e112c55c3c489e311657ad269
757ea24https://github.com/python-graphblas/python-graphblas/pull/423/commits/757ea240167f112e112c55c3c489e311657ad269
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numba version depends on python and numpy versionshttps://github.com/python-graphblas/python-graphblas/pull/423/commits/3db0f4eb2309e6d9b79a60f95f36f9d8ed89812c
3db0f4ehttps://github.com/python-graphblas/python-graphblas/pull/423/commits/3db0f4eb2309e6d9b79a60f95f36f9d8ed89812c
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coveragehttps://github.com/python-graphblas/python-graphblas/pull/423/commits/2e9d8cd800dfbdd146bc18397003ef81b289d8ee
2e9d8cdhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/2e9d8cd800dfbdd146bc18397003ef81b289d8ee
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lazy indexunary handling and a bit more coveragehttps://github.com/python-graphblas/python-graphblas/pull/423/commits/e6f94ecab34b8fb44ac18ab2b661f5111ca3a066
e6f94echttps://github.com/python-graphblas/python-graphblas/pull/423/commits/e6f94ecab34b8fb44ac18ab2b661f5111ca3a066
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skip numba 0.57.0rc1 on Windows for nowhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/eb1560ea4f365cb0b0664bd739c47198280bf602
eb1560ehttps://github.com/python-graphblas/python-graphblas/pull/423/commits/eb1560ea4f365cb0b0664bd739c47198280bf602
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quick experiment with coveragehttps://github.com/python-graphblas/python-graphblas/pull/423/commits/f6f35d21682aebe466ba5d7ad4852e3cab419a26
f6f35d2https://github.com/python-graphblas/python-graphblas/pull/423/commits/f6f35d21682aebe466ba5d7ad4852e3cab419a26
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try "no branch" herehttps://github.com/python-graphblas/python-graphblas/pull/423/commits/49e29f8181478ebd6f779ba0e6ba1777dfe2babc
49e29f8https://github.com/python-graphblas/python-graphblas/pull/423/commits/49e29f8181478ebd6f779ba0e6ba1777dfe2babc
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coverage cleanuphttps://github.com/python-graphblas/python-graphblas/pull/423/commits/759405fdf9a2a0e9f89023ed593d378a561bd50f
759405fhttps://github.com/python-graphblas/python-graphblas/pull/423/commits/759405fdf9a2a0e9f89023ed593d378a561bd50f
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Merge branch 'main' into no_numbahttps://github.com/python-graphblas/python-graphblas/pull/423/commits/945bdf90ba42783131f6bfbb4e64ab0c3cb26832
945bdf9https://github.com/python-graphblas/python-graphblas/pull/423/commits/945bdf90ba42783131f6bfbb4e64ab0c3cb26832
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Make PNGs smaller viahttps://github.com/python-graphblas/python-graphblas/pull/423/commits/f6c6d2785c09e62f907a3bd0ad3a177ee9306ade
https://tinypng.comhttps://tinypng.com
f6c6d27https://github.com/python-graphblas/python-graphblas/pull/423/commits/f6c6d2785c09e62f907a3bd0ad3a177ee9306ade
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mark a couple more lines as flaky coveragehttps://github.com/python-graphblas/python-graphblas/pull/423/commits/10706aaaa41db4ebea8d1779991035e61af083f9
10706aahttps://github.com/python-graphblas/python-graphblas/pull/423/commits/10706aaaa41db4ebea8d1779991035e61af083f9
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Two more flaky coveragehttps://github.com/python-graphblas/python-graphblas/pull/423/commits/789a37e6e0bc9361dca3513d238cb843db0ab435
789a37ehttps://github.com/python-graphblas/python-graphblas/pull/423/commits/789a37e6e0bc9361dca3513d238cb843db0ab435
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eriknwhttps://github.com/eriknw
Apr 16, 2023https://github.com/python-graphblas/python-graphblas/pull/423#issuecomment-1510458203
Please reload this pagehttps://github.com/python-graphblas/python-graphblas/pull/423
https://github.com/eriknw
eriknwhttps://github.com/eriknw
0eb490fhttps://github.com/python-graphblas/python-graphblas/commit/0eb490fe6dcb96264fed6637517de01c26f036cb
Apr 16, 2023https://github.com/python-graphblas/python-graphblas/pull/423#event-9018082600
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eriknwhttps://github.com/eriknw
Apr 18, 2023 https://github.com/python-graphblas/python-graphblas/pull/423#ref-issue-1446734510
Support Python 3.11 #324 https://github.com/python-graphblas/python-graphblas/issues/324
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https://github.com/python-graphblas/python-graphblas/pull/423/files/de2c81f0f3a6713ff77134022b4ca56405c9c7ce
Make numba able to be optional https://github.com/python-graphblas/python-graphblas/issues/415
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