René's URL Explorer Experiment


Title: GitHub - popgenmethods/smcpp: SMC++ infers population history from whole-genome sequence data. · GitHub

Open Graph Title: GitHub - popgenmethods/smcpp: SMC++ infers population history from whole-genome sequence data.

X Title: GitHub - popgenmethods/smcpp: SMC++ infers population history from whole-genome sequence data.

Description: SMC++ infers population history from whole-genome sequence data. - popgenmethods/smcpp

Open Graph Description: SMC++ infers population history from whole-genome sequence data. - popgenmethods/smcpp

X Description: SMC++ infers population history from whole-genome sequence data. - popgenmethods/smcpp

Opengraph URL: https://github.com/popgenmethods/smcpp

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:7316703d-b30b-2af0-775b-3c0b34171c8c
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id8248:34ED9:E639ED:14FBA47:6A4E2F6A
html-safe-noncecaf58a4bcc13be9e9bd7f4e8df09dc676052bdd760c47be205c3dff7cefcf39a
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4MjQ4OjM0RUQ5OkU2MzlFRDoxNEZCQTQ3OjZBNEUyRjZBIiwidmlzaXRvcl9pZCI6IjI3NTY0NTUyNTE1MjMyODQ4NDIiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmacc67836cf9a98eef27026d5b95762e33512c623e23879224d5970ee01f880e4ff
hovercard-subject-tagrepository:74929658
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/popgenmethods/smcpp
twitter:imagehttps://opengraph.githubassets.com/bed974b6d56c400a23575941c96896e7106cee998f4ff36acaef04ed33b2e93a/popgenmethods/smcpp
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/bed974b6d56c400a23575941c96896e7106cee998f4ff36acaef04ed33b2e93a/popgenmethods/smcpp
og:image:altSMC++ infers population history from whole-genome sequence data. - popgenmethods/smcpp
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None030096ee0db095447bfe77409d33bfac127ca7128299c58deef27c52eaa1b1f0
turbo-cache-controlno-cache
go-importgithub.com/popgenmethods/smcpp git https://github.com/popgenmethods/smcpp.git
octolytics-dimension-user_id12285311
octolytics-dimension-user_loginpopgenmethods
octolytics-dimension-repository_id74929658
octolytics-dimension-repository_nwopopgenmethods/smcpp
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id74929658
octolytics-dimension-repository_network_root_nwopopgenmethods/smcpp
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
released9dd20d38f8ae3c4cb6b597807431db300d0bd2a
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/popgenmethods/smcpp#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fpopgenmethods%2Fsmcpp
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fpopgenmethods%2Fsmcpp
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=popgenmethods%2Fsmcpp
Reloadhttps://github.com/popgenmethods/smcpp
Reloadhttps://github.com/popgenmethods/smcpp
Reloadhttps://github.com/popgenmethods/smcpp
Please reload this pagehttps://github.com/popgenmethods/smcpp
popgenmethods https://github.com/popgenmethods
smcpphttps://github.com/popgenmethods/smcpp
Notifications https://github.com/login?return_to=%2Fpopgenmethods%2Fsmcpp
Fork 35 https://github.com/login?return_to=%2Fpopgenmethods%2Fsmcpp
Star 177 https://github.com/login?return_to=%2Fpopgenmethods%2Fsmcpp
Code https://github.com/popgenmethods/smcpp
Issues 99 https://github.com/popgenmethods/smcpp/issues
Pull requests 5 https://github.com/popgenmethods/smcpp/pulls
Actions https://github.com/popgenmethods/smcpp/actions
Projects https://github.com/popgenmethods/smcpp/projects
Security and quality 0 https://github.com/popgenmethods/smcpp/security
Insights https://github.com/popgenmethods/smcpp/pulse
Code https://github.com/popgenmethods/smcpp
Issues https://github.com/popgenmethods/smcpp/issues
Pull requests https://github.com/popgenmethods/smcpp/pulls
Actions https://github.com/popgenmethods/smcpp/actions
Projects https://github.com/popgenmethods/smcpp/projects
Security and quality https://github.com/popgenmethods/smcpp/security
Insights https://github.com/popgenmethods/smcpp/pulse
https://github.com/popgenmethods/smcpp
Brancheshttps://github.com/popgenmethods/smcpp/branches
Tagshttps://github.com/popgenmethods/smcpp/tags
https://github.com/popgenmethods/smcpp/branches
https://github.com/popgenmethods/smcpp/tags
1,358 Commitshttps://github.com/popgenmethods/smcpp/commits/master/
https://github.com/popgenmethods/smcpp/commits/master/
.github/workflowshttps://github.com/popgenmethods/smcpp/tree/master/.github/workflows
.github/workflowshttps://github.com/popgenmethods/smcpp/tree/master/.github/workflows
assetshttps://github.com/popgenmethods/smcpp/tree/master/assets
assetshttps://github.com/popgenmethods/smcpp/tree/master/assets
condahttps://github.com/popgenmethods/smcpp/tree/master/conda
condahttps://github.com/popgenmethods/smcpp/tree/master/conda
examplehttps://github.com/popgenmethods/smcpp/tree/master/example
examplehttps://github.com/popgenmethods/smcpp/tree/master/example
includehttps://github.com/popgenmethods/smcpp/tree/master/include
includehttps://github.com/popgenmethods/smcpp/tree/master/include
scriptshttps://github.com/popgenmethods/smcpp/tree/master/scripts
scriptshttps://github.com/popgenmethods/smcpp/tree/master/scripts
smcpphttps://github.com/popgenmethods/smcpp/tree/master/smcpp
smcpphttps://github.com/popgenmethods/smcpp/tree/master/smcpp
srchttps://github.com/popgenmethods/smcpp/tree/master/src
srchttps://github.com/popgenmethods/smcpp/tree/master/src
testhttps://github.com/popgenmethods/smcpp/tree/master/test
testhttps://github.com/popgenmethods/smcpp/tree/master/test
utilhttps://github.com/popgenmethods/smcpp/tree/master/util
utilhttps://github.com/popgenmethods/smcpp/tree/master/util
.dockerignorehttps://github.com/popgenmethods/smcpp/blob/master/.dockerignore
.dockerignorehttps://github.com/popgenmethods/smcpp/blob/master/.dockerignore
.gitignorehttps://github.com/popgenmethods/smcpp/blob/master/.gitignore
.gitignorehttps://github.com/popgenmethods/smcpp/blob/master/.gitignore
.travis.ymlhttps://github.com/popgenmethods/smcpp/blob/master/.travis.yml
.travis.ymlhttps://github.com/popgenmethods/smcpp/blob/master/.travis.yml
Dockerfilehttps://github.com/popgenmethods/smcpp/blob/master/Dockerfile
Dockerfilehttps://github.com/popgenmethods/smcpp/blob/master/Dockerfile
LICENSEhttps://github.com/popgenmethods/smcpp/blob/master/LICENSE
LICENSEhttps://github.com/popgenmethods/smcpp/blob/master/LICENSE
Makefilehttps://github.com/popgenmethods/smcpp/blob/master/Makefile
Makefilehttps://github.com/popgenmethods/smcpp/blob/master/Makefile
README.rsthttps://github.com/popgenmethods/smcpp/blob/master/README.rst
README.rsthttps://github.com/popgenmethods/smcpp/blob/master/README.rst
docker-compose.test.ymlhttps://github.com/popgenmethods/smcpp/blob/master/docker-compose.test.yml
docker-compose.test.ymlhttps://github.com/popgenmethods/smcpp/blob/master/docker-compose.test.yml
pyproject.tomlhttps://github.com/popgenmethods/smcpp/blob/master/pyproject.toml
pyproject.tomlhttps://github.com/popgenmethods/smcpp/blob/master/pyproject.toml
pytest.inihttps://github.com/popgenmethods/smcpp/blob/master/pytest.ini
pytest.inihttps://github.com/popgenmethods/smcpp/blob/master/pytest.ini
setup.cfghttps://github.com/popgenmethods/smcpp/blob/master/setup.cfg
setup.cfghttps://github.com/popgenmethods/smcpp/blob/master/setup.cfg
setup.pyhttps://github.com/popgenmethods/smcpp/blob/master/setup.py
setup.pyhttps://github.com/popgenmethods/smcpp/blob/master/setup.py
READMEhttps://github.com/popgenmethods/smcpp
GPL-3.0 licensehttps://github.com/popgenmethods/smcpp
https://travis-ci.org/popgenmethods/smcpp
Quick start guidehttps://github.com/popgenmethods/smcpp#quick-start-guide
Installation instructionshttps://github.com/popgenmethods/smcpp#installation-instructions
Build instructionshttps://github.com/popgenmethods/smcpp#build-instructions
Note for OS X usershttps://github.com/popgenmethods/smcpp#note-for-os-x-users
Virtual environmenthttps://github.com/popgenmethods/smcpp#virtual-environment
Usagehttps://github.com/popgenmethods/smcpp#usage
vcf2smchttps://github.com/popgenmethods/smcpp#vcf2smc
estimatehttps://github.com/popgenmethods/smcpp#estimate
cvhttps://github.com/popgenmethods/smcpp#cv
plothttps://github.com/popgenmethods/smcpp#plot
splithttps://github.com/popgenmethods/smcpp#split
posteriorhttps://github.com/popgenmethods/smcpp#posterior
citehttps://github.com/popgenmethods/smcpp#cite
Tips for using SMC++https://github.com/popgenmethods/smcpp#tips-for-using-smc
Frequently asked questionshttps://github.com/popgenmethods/smcpp#frequently-asked-questions
What to do if you encounter troublehttps://github.com/popgenmethods/smcpp#what-to-do-if-you-encounter-trouble
File formatshttps://github.com/popgenmethods/smcpp#file-formats
Input data formathttps://github.com/popgenmethods/smcpp#input-data-format
Output data formathttps://github.com/popgenmethods/smcpp#output-data-format
Quick start guidehttps://github.com/popgenmethods/smcpp#id8
https://github.com/popgenmethods/smcpp#quick-start-guide
installation instructionshttps://github.com/popgenmethods/smcpp#installation-instructions
vcf2smchttps://github.com/popgenmethods/smcpp#vcf2smc
estimatehttps://github.com/popgenmethods/smcpp#estimate
plothttps://github.com/popgenmethods/smcpp#plot
splithttps://github.com/popgenmethods/smcpp#split
Installation instructionshttps://github.com/popgenmethods/smcpp#id9
https://github.com/popgenmethods/smcpp#installation-instructions
singularityhttps://sylabs.io/guides/3.7/user-guide/
Build instructionshttps://github.com/popgenmethods/smcpp#id10
https://github.com/popgenmethods/smcpp#build-instructions
gmphttp://gmplib.org
mpfrhttp://mpfr.org
gslhttps://github.com/popgenmethods/smcpp/blob/master/https/www.gnu.org/software/gsl
Homebrewhttp://brew.sh
Note for OS X usershttps://github.com/popgenmethods/smcpp#id11
https://github.com/popgenmethods/smcpp#note-for-os-x-users
OpenMPhttp://openmp.org
Virtual environmenthttps://github.com/popgenmethods/smcpp#id12
https://github.com/popgenmethods/smcpp#virtual-environment
virtual environmenthttp://docs.python-guide.org/en/latest/dev/virtualenvs/
Usagehttps://github.com/popgenmethods/smcpp#id13
https://github.com/popgenmethods/smcpp#usage
vcf2smchttps://github.com/popgenmethods/smcpp#id14
https://github.com/popgenmethods/smcpp#vcf2smc
https://github.com/popgenmethods/smcpp#required-arguments
indexed VCF filehttp://www.htslib.org/doc/tabix.html
estimatehttps://github.com/popgenmethods/smcpp#estimate
vcf2smchttps://github.com/popgenmethods/smcpp#vcf2smc
https://github.com/popgenmethods/smcpp#optional-arguments
https://github.com/popgenmethods/smcpp#composite-likelihood
estimatehttps://github.com/popgenmethods/smcpp#estimate
https://github.com/popgenmethods/smcpp#caveats
maskinghttps://github.com/popgenmethods/smcpp#masking
input data formathttps://github.com/popgenmethods/smcpp#input-data-format
estimatehttps://github.com/popgenmethods/smcpp#id15
https://github.com/popgenmethods/smcpp#estimate
https://github.com/popgenmethods/smcpp#required-arguments-1
vcf2smchttps://github.com/popgenmethods/smcpp#vcf2smc
https://github.com/popgenmethods/smcpp#optional-arguments-1
cvhttps://github.com/popgenmethods/smcpp#id16
https://github.com/popgenmethods/smcpp#cv
estimatehttps://github.com/popgenmethods/smcpp#estimate
estimatehttps://github.com/popgenmethods/smcpp#estimate
plothttps://github.com/popgenmethods/smcpp#id17
https://github.com/popgenmethods/smcpp#plot
https://github.com/popgenmethods/smcpp#required-arguments-2
estimatehttps://github.com/popgenmethods/smcpp#estimate
https://github.com/popgenmethods/smcpp#optional-arguments-2
splithttps://github.com/popgenmethods/smcpp#id18
https://github.com/popgenmethods/smcpp#split
estimatehttps://github.com/popgenmethods/smcpp#estimate
posteriorhttps://github.com/popgenmethods/smcpp#id19
https://github.com/popgenmethods/smcpp#posterior
https://github.com/popgenmethods/smcpp#required-arguments-3
estimatehttps://github.com/popgenmethods/smcpp#estimate
vcf2smchttps://github.com/popgenmethods/smcpp#vcf2smc
https://github.com/popgenmethods/smcpp#optional-arguments-3
citehttps://github.com/popgenmethods/smcpp#id20
https://github.com/popgenmethods/smcpp#cite
accompanying paperhttp://www.nature.com/ng/journal/vaop/ncurrent/ng.3748
Tips for using SMC++https://github.com/popgenmethods/smcpp#id21
https://github.com/popgenmethods/smcpp#tips-for-using-smc
estimatehttps://github.com/popgenmethods/smcpp#estimate
splithttps://github.com/popgenmethods/smcpp#split
herehttps://blogs.mathworks.com/cleve/2012/07/16/splines-and-pchips/#98ccb1df-b614-41d4-b1b5-e090a87e0d46
Frequently asked questionshttps://github.com/popgenmethods/smcpp#id22
https://github.com/popgenmethods/smcpp#frequently-asked-questions
build instructionshttps://github.com/popgenmethods/smcpp#build-instructions
vcf2smchttps://github.com/popgenmethods/smcpp#vcf2smc
vcf2smchttps://github.com/popgenmethods/smcpp#vcf2smc
estimatehttps://github.com/popgenmethods/smcpp#estimate
What to do if you encounter troublehttps://github.com/popgenmethods/smcpp#id23
https://github.com/popgenmethods/smcpp#what-to-do-if-you-encounter-trouble
latest versionhttps://github.com/popgenmethods/smcpp/releases/latest
file an issuehttps://github.com/popgenmethods/smcpp/issues
File formatshttps://github.com/popgenmethods/smcpp#id24
https://github.com/popgenmethods/smcpp#file-formats
Input data formathttps://github.com/popgenmethods/smcpp#id25
https://github.com/popgenmethods/smcpp#input-data-format
vcf2smchttps://github.com/popgenmethods/smcpp#vcf2smc
Output data formathttps://github.com/popgenmethods/smcpp#id26
https://github.com/popgenmethods/smcpp#output-data-format
JSON-formattedhttps://en.wikipedia.org/wiki/JSON
Readme https://github.com/popgenmethods/smcpp#readme-ov-file
GPL-3.0 license https://github.com/popgenmethods/smcpp#GPL-3.0-1-ov-file
Please reload this pagehttps://github.com/popgenmethods/smcpp
Activityhttps://github.com/popgenmethods/smcpp/activity
Custom propertieshttps://github.com/popgenmethods/smcpp/custom-properties
35 forkshttps://github.com/popgenmethods/smcpp/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fpopgenmethods%2Fsmcpp&report=popgenmethods+%28user%29
Releases 20https://github.com/popgenmethods/smcpp/releases
v1.15.2 Latest Jan 10, 2019 https://github.com/popgenmethods/smcpp/releases/tag/v1.15.2
+ 19 releaseshttps://github.com/popgenmethods/smcpp/releases
Packages 0https://github.com/orgs/popgenmethods/packages?repo_name=smcpp
Please reload this pagehttps://github.com/popgenmethods/smcpp
Please reload this pagehttps://github.com/popgenmethods/smcpp
Contributorshttps://github.com/popgenmethods/smcpp/graphs/contributors
Please reload this pagehttps://github.com/popgenmethods/smcpp
C++ 93.9% https://github.com/popgenmethods/smcpp/search?l=c%2B%2B
Python 4.4% https://github.com/popgenmethods/smcpp/search?l=python
C 1.2% https://github.com/popgenmethods/smcpp/search?l=c
Cython 0.3% https://github.com/popgenmethods/smcpp/search?l=cython
Makefile 0.1% https://github.com/popgenmethods/smcpp/search?l=makefile
Shell 0.1% https://github.com/popgenmethods/smcpp/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.