René's URL Explorer Experiment


Title: Ev_simple_fasta_header by anna-parker · Pull Request #2 · pathoplexus/dev_example_data · GitHub

Open Graph Title: Ev_simple_fasta_header by anna-parker · Pull Request #2 · pathoplexus/dev_example_data

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anna-parkerhttps://github.com/anna-parker
pathoplexus:mainhttps://github.com/pathoplexus/dev_example_data/tree/main
anna-parker:ev_simple_fasta_headerhttps://github.com/anna-parker/dev_example_data/tree/ev_simple_fasta_header
Conversationhttps://github.com/pathoplexus/dev_example_data/pull/2
Commits4 (4)https://github.com/pathoplexus/dev_example_data/pull/2/commits
Checkshttps://github.com/pathoplexus/dev_example_data/pull/2/checks
Files changedhttps://github.com/pathoplexus/dev_example_data/pull/2/files
Ev_simple_fasta_headerhttps://github.com/pathoplexus/dev_example_data/pull/2#top
anna-parkerhttps://github.com/anna-parker
pathoplexus:mainhttps://github.com/pathoplexus/dev_example_data/tree/main
anna-parker:ev_simple_fasta_headerhttps://github.com/anna-parker/dev_example_data/tree/ev_simple_fasta_header
https://github.com/anna-parker
anna-parkerhttps://github.com/anna-parker
Aug 12, 2025https://github.com/pathoplexus/dev_example_data/pull/2#issue-3313510076
Please reload this pagehttps://github.com/pathoplexus/dev_example_data/pull/2
@alejandra-gonzalezsanchezhttps://github.com/alejandra-gonzalezsanchez
Please reload this pagehttps://github.com/pathoplexus/dev_example_data/pull/2
anna-parkerhttps://github.com/anna-parker
May 9, 2025 11:49https://github.com/pathoplexus/dev_example_data/pull/2#commits-pushed-bfa260e
https://github.com/anna-parker
feat: add example data for hmpv, rsv-a and rsv-bhttps://github.com/pathoplexus/dev_example_data/pull/2/commits/bfa260e1c79e4f44b134440805399bedb3460797
bfa260ehttps://github.com/pathoplexus/dev_example_data/pull/2/commits/bfa260e1c79e4f44b134440805399bedb3460797
https://github.com/anna-parker
fixhttps://github.com/pathoplexus/dev_example_data/pull/2/commits/f835d957abfbdff30eb2498e4e2396b6fef93ef1
f835d95https://github.com/pathoplexus/dev_example_data/pull/2/commits/f835d957abfbdff30eb2498e4e2396b6fef93ef1
https://github.com/anna-parker
feat: add enteroviruses with no assignment in fasta headerhttps://github.com/pathoplexus/dev_example_data/pull/2/commits/e6da1ffafdb6b2266337417e92f7043afbc75b76
e6da1ffhttps://github.com/pathoplexus/dev_example_data/pull/2/commits/e6da1ffafdb6b2266337417e92f7043afbc75b76
https://github.com/anna-parker
anna-parkerhttps://github.com/anna-parker
Aug 12, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-pullrequest-3281483895
feat!(prepro, config): assign segment with nextclade sort loculus-project/loculus#4783 https://github.com/loculus-project/loculus/pull/4783
https://github.com/anna-parker
anna-parkerhttps://github.com/anna-parker
Nov 10, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-pullrequest-3608638508
feat(prepro): assign segment/subtype using nextclade sort (3/n) loculus-project/loculus#5402 https://github.com/loculus-project/loculus/pull/5402
https://github.com/anna-parker
also add CCHF with new submission formathttps://github.com/pathoplexus/dev_example_data/pull/2/commits/21394412c3c577d266f9a6f9dc8a0dd92d8d4e98
2139441https://github.com/pathoplexus/dev_example_data/pull/2/commits/21394412c3c577d266f9a6f9dc8a0dd92d8d4e98
anna-parkerhttps://github.com/anna-parker
Nov 20, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-c9afc61
https://github.com/anna-parker
feat(prepro): assign segment/subtype using nextclade sort (3/n) (https://github.com/loculus-project/loculus/commit/c9afc613cb9591f4300e0dafd9e69cd48532f9f6
#5402https://github.com/loculus-project/loculus/pull/5402
)https://github.com/loculus-project/loculus/commit/c9afc613cb9591f4300e0dafd9e69cd48532f9f6
c9afc61https://github.com/loculus-project/loculus/commit/c9afc613cb9591f4300e0dafd9e69cd48532f9f6
#4847https://github.com/loculus-project/loculus/issues/4847
#4821https://github.com/loculus-project/loculus/pull/4821
#5398https://github.com/loculus-project/loculus/pull/5398
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
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https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://sort-multi-path.loculus.orghttps://sort-multi-path.loculus.org
https://github.com/anna-parker
anna-parkerhttps://github.com/anna-parker
Nov 20, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-pullrequest-3606596373
feat!(backend): refactor multi-segment submission (2/n) loculus-project/loculus#5398 https://github.com/loculus-project/loculus/pull/5398
anna-parkerhttps://github.com/anna-parker
Nov 20, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-0d41959
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/0d4195972f48d5e15777507d16105e82f8df0288
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/0d4195972f48d5e15777507d16105e82f8df0288
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#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
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https://github.com/anna-parker
anna-parkerhttps://github.com/anna-parker
Nov 20, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-pullrequest-3595125077
feat!(website, prepro, backend, config, integration):multi pathogen - refactor multi segment submission in backend and edit page and have prepro assign segments loculus-project/loculus#5382 https://github.com/loculus-project/loculus/pull/5382
anna-parkerhttps://github.com/anna-parker
Nov 20, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-95aa5e9
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/95aa5e95bd4e343f1265019b04e817aec547f45f
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/95aa5e95bd4e343f1265019b04e817aec547f45f
95aa5e9https://github.com/loculus-project/loculus/commit/95aa5e95bd4e343f1265019b04e817aec547f45f
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
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https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
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anna-parkerhttps://github.com/anna-parker
Nov 21, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-8a2284f
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/8a2284ff5c1d44bd23a026580ada0a374c0a6582
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/8a2284ff5c1d44bd23a026580ada0a374c0a6582
8a2284fhttps://github.com/loculus-project/loculus/commit/8a2284ff5c1d44bd23a026580ada0a374c0a6582
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://multi-segment-submission.loculus.orghttps://multi-segment-submission.loculus.org
anna-parkerhttps://github.com/anna-parker
Nov 24, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-70c59a6
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/70c59a669a05b66d2f545e3df6bab2cfde4f11f3
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/70c59a669a05b66d2f545e3df6bab2cfde4f11f3
70c59a6https://github.com/loculus-project/loculus/commit/70c59a669a05b66d2f545e3df6bab2cfde4f11f3
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://multi-segment-submission.loculus.orghttps://multi-segment-submission.loculus.org
anna-parkerhttps://github.com/anna-parker
Nov 24, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-7ce75fc
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/7ce75fc5befea817358652b3d061b0d8daf966d9
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/7ce75fc5befea817358652b3d061b0d8daf966d9
7ce75fchttps://github.com/loculus-project/loculus/commit/7ce75fc5befea817358652b3d061b0d8daf966d9
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://multi-segment-submission.loculus.orghttps://multi-segment-submission.loculus.org
anna-parkerhttps://github.com/anna-parker
Nov 25, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-f45a68f
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/f45a68faeda0ddce8bab9b0a619f38d8e6677867
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/f45a68faeda0ddce8bab9b0a619f38d8e6677867
f45a68fhttps://github.com/loculus-project/loculus/commit/f45a68faeda0ddce8bab9b0a619f38d8e6677867
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://multi-segment-submission.loculus.orghttps://multi-segment-submission.loculus.org
anna-parkerhttps://github.com/anna-parker
Nov 26, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-7dc9b08
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/7dc9b089f151a56357d1a3dcdf147c5fe8f077d3
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/7dc9b089f151a56357d1a3dcdf147c5fe8f077d3
7dc9b08https://github.com/loculus-project/loculus/commit/7dc9b089f151a56357d1a3dcdf147c5fe8f077d3
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://multi-segment-submission.loculus.orghttps://multi-segment-submission.loculus.org
anna-parkerhttps://github.com/anna-parker
Nov 26, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-dcfbf76
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/dcfbf768a9afc4981ccd14ad665fe6024ac5b0d5
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/dcfbf768a9afc4981ccd14ad665fe6024ac5b0d5
dcfbf76https://github.com/loculus-project/loculus/commit/dcfbf768a9afc4981ccd14ad665fe6024ac5b0d5
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://multi-segment-submission.loculus.orghttps://multi-segment-submission.loculus.org
anna-parkerhttps://github.com/anna-parker
Nov 27, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-15249ce
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/15249ce39fbb92e89d3d8d01027fc061ba09f227
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/15249ce39fbb92e89d3d8d01027fc061ba09f227
15249cehttps://github.com/loculus-project/loculus/commit/15249ce39fbb92e89d3d8d01027fc061ba09f227
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://multi-segment-submission.loculus.orghttps://multi-segment-submission.loculus.org
anna-parkerhttps://github.com/anna-parker
Nov 28, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-14fbdfb
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/14fbdfb6d56fff17208509d4bc962fa1d154074d
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/14fbdfb6d56fff17208509d4bc962fa1d154074d
14fbdfbhttps://github.com/loculus-project/loculus/commit/14fbdfb6d56fff17208509d4bc962fa1d154074d
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://multi-segment-submission.loculus.orghttps://multi-segment-submission.loculus.org
anna-parkerhttps://github.com/anna-parker
Dec 1, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-0ba780a
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/0ba780ae8da9a04f00198cbc6b703caa574cc8e2
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/0ba780ae8da9a04f00198cbc6b703caa574cc8e2
0ba780ahttps://github.com/loculus-project/loculus/commit/0ba780ae8da9a04f00198cbc6b703caa574cc8e2
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://multi-segment-submission.loculus.orghttps://multi-segment-submission.loculus.org
anna-parkerhttps://github.com/anna-parker
Dec 1, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-a1c29d5
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/a1c29d5d140e44998002dba3e883402c99440734
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/a1c29d5d140e44998002dba3e883402c99440734
a1c29d5https://github.com/loculus-project/loculus/commit/a1c29d5d140e44998002dba3e883402c99440734
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://multi-segment-submission.loculus.orghttps://multi-segment-submission.loculus.org
anna-parkerhttps://github.com/anna-parker
Dec 2, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-c36c6e2
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/c36c6e26ddba1e1fd9893dee2104a17a49db3b84
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/c36c6e26ddba1e1fd9893dee2104a17a49db3b84
c36c6e2https://github.com/loculus-project/loculus/commit/c36c6e26ddba1e1fd9893dee2104a17a49db3b84
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://multi-segment-submission.loculus.orghttps://multi-segment-submission.loculus.org
anna-parkerhttps://github.com/anna-parker
Dec 3, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-a31a654
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/a31a654845d534768cf740b1125cb174b8da983f
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/a31a654845d534768cf740b1125cb174b8da983f
a31a654https://github.com/loculus-project/loculus/commit/a31a654845d534768cf740b1125cb174b8da983f
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://multi-segment-submission.loculus.orghttps://multi-segment-submission.loculus.org
anna-parkerhttps://github.com/anna-parker
Dec 4, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-ea37faf
https://github.com/anna-parker
https://github.com/corneliusroemer
feat!(backend): refactor multi-segment submission (2/n) (https://github.com/loculus-project/loculus/commit/ea37faf0643efa2d02882f063d93616ac616ba4a
#5398https://github.com/loculus-project/loculus/pull/5398
)https://github.com/loculus-project/loculus/commit/ea37faf0643efa2d02882f063d93616ac616ba4a
ea37fafhttps://github.com/loculus-project/loculus/commit/ea37faf0643efa2d02882f063d93616ac616ba4a
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5382https://github.com/loculus-project/loculus/pull/5382
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
https://multi-segment-submission.loculus.orghttps://multi-segment-submission.loculus.org
anna-parkerhttps://github.com/anna-parker
Dec 5, 2025 https://github.com/pathoplexus/dev_example_data/pull/2#ref-commit-d3c43c0
https://github.com/anna-parker
https://github.com/corneliusroemer
https://github.com/fengelniederhammer
https://github.com/theosanderson
feat!(website, prepro, backend, config, integration):multi pathogen -…https://github.com/loculus-project/loculus/commit/d3c43c019938f17dab5788904c9ff0e4cb1d8279
d3c43c0https://github.com/loculus-project/loculus/commit/d3c43c019938f17dab5788904c9ff0e4cb1d8279
#5382https://github.com/loculus-project/loculus/pull/5382
#4999https://github.com/loculus-project/loculus/issues/4999
#4708https://github.com/loculus-project/loculus/issues/4708
#4734https://github.com/loculus-project/loculus/issues/4734
#5511https://github.com/loculus-project/loculus/issues/5511
#5392https://github.com/loculus-project/loculus/issues/5392
#5185 (comment)https://github.com/loculus-project/loculus/issues/5185#issuecomment-3383043241
#5398https://github.com/loculus-project/loculus/pull/5398
#5402https://github.com/loculus-project/loculus/pull/5402
https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399https://microbial-bioinfo.slack.com/archives/CB0HYT53M/p1760961465729399
https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6https://app.nuclino.com/Loculus/Development/2025-10-20-Weekly-6d5fe89f-8ded-4286-b892-d215e0a498f6
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
https://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_outputhttps://raw.githubusercontent.com/nextstrain/nextclade_data/cornelius-cchfv/data_output
pathoplexus/example_data#16https://github.com/pathoplexus/example_data/pull/16
pathoplexus/dev_example_data#2https://github.com/pathoplexus/dev_example_data/pull/2
#5561https://github.com/loculus-project/loculus/pull/5561
#5563https://github.com/loculus-project/loculus/pull/5563
#5554https://github.com/loculus-project/loculus/pull/5554
#5511https://github.com/loculus-project/loculus/issues/5511
https://github.com/loculus-project/nextclade-sort-minimizer-creatorhttps://github.com/loculus-project/nextclade-sort-minimizer-creator
pathoplexus/pathoplexus#759https://github.com/pathoplexus/pathoplexus/pull/759
https://edit-page-anya.loculus.orghttps://edit-page-anya.loculus.org
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