René's URL Explorer Experiment

{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"failing tests","articleBody":"Tests have been failing for a while (I just re-enabled the test to be run on this repo, but they have been failing for my personal fork for a while) due to NetCDF being a lot more verbose.\r\n\r\nInstead of printing\r\n```\r\n\"Storage @ '/tmp/tmpfqsyxkfk/setup.nc'\"\r\n```\r\nit stores:\r\n```\r\nE             +  \"\u003cclass 'openpathsampling.storage.storage.Storage'\u003e\",\r\nE             +  'root group (NETCDF4 data model, file format HDF5):',\r\nE             +  '    format: netcdf+',\r\nE             +  '    ncplus_version: 1.5.2',\r\nE             +  '    storage_format: openpathsampling',\r\nE             +  '    storage_version: 1.5.2',\r\nE             +  '    use_uuid: True',\r\nE             +  '    dimensions(sizes): scalar(1), pair(2), stores(22), trajectories(1), '\r\nE             +  'topologies(2), snapshots(7), snapshottype(1), samples(1), samplesets(1), '\r\nE             +  'movechanges(0), steps(0), details(0), pathmovers(5), '\r\nE             +  'shootingpointselectors(1), engines(2), pathsimulators(0), transitions(2), '\r\nE             +  'networks(1), schemes(1), interfacesets(0), msouters(0), volumes(8), '\r\nE             +  'ensembles(16), tag(1), attributes(1), snapshot0(7), snapshot0n_atoms(1), '\r\nE             +  'snapshot0n_spatial(3)',\r\nE             +  \"    variables(dimensions): \u003cclass 'str'\u003e stores_json(stores), \u003cclass 'str'\u003e \"\r\nE             +  \"stores_uuid(stores), \u003cclass 'str'\u003e stores_name(stores), \u003cclass 'str'\u003e \"\r\nE             +  \"trajectories_json(trajectories), \u003cclass 'str'\u003e \"\r\nE             +  \"trajectories_uuid(trajectories), \u003cclass 'str'\u003e \"\r\nE             +  \"trajectories_snapshots(trajectories), \u003cclass 'str'\u003e \"\r\nE             +  \"topologies_json(topologies), \u003cclass 'str'\u003e topologies_uuid(topologies), \"\r\nE             +  \"\u003cclass 'str'\u003e topologies_name(topologies), \u003cclass 'str'\u003e \"\r\nE             +  \"snapshots_uuid(snapshots), int32 snapshots_store(snapshots), \u003cclass 'str'\u003e \"\r\nE             +  \"snapshottype(snapshottype), \u003cclass 'str'\u003e samples_uuid(samples), \u003cclass \"\r\nE             +  \"'str'\u003e samples_trajectory(samples), \u003cclass 'str'\u003e samples_ensemble(samples), \"\r\nE             +  \"int32 samples_replica(samples), \u003cclass 'str'\u003e samples_parent(samples), \"\r\nE             +  \"float32 samples_bias(samples), \u003cclass 'str'\u003e samples_mover(samples), \u003cclass \"\r\nE             +  \"'str'\u003e samplesets_uuid(samplesets), \u003cclass 'str'\u003e \"\r\nE             +  \"samplesets_samples(samplesets), \u003cclass 'str'\u003e \"\r\nE             +  \"samplesets_movepath(samplesets), \u003cclass 'str'\u003e \"\r\nE             +  \"movechanges_uuid(movechanges), \u003cclass 'str'\u003e \"\r\nE             +  \"movechanges_details(movechanges), \u003cclass 'str'\u003e \"\r\nE             +  \"movechanges_mover(movechanges), \u003cclass 'str'\u003e movechanges_cls(movechanges), \"\r\nE             +  \"\u003cclass 'str'\u003e movechanges_subchanges(movechanges), \u003cclass 'str'\u003e \"\r\nE             +  \"movechanges_samples(movechanges), \u003cclass 'str'\u003e \"\r\nE             +  \"movechanges_input_samples(movechanges), \u003cclass 'str'\u003e steps_uuid(steps), \"\r\nE             +  \"\u003cclass 'str'\u003e steps_change(steps), \u003cclass 'str'\u003e steps_active(steps), \u003cclass \"\r\nE             +  \"'str'\u003e steps_previous(steps), \u003cclass 'str'\u003e steps_simulation(steps), int32 \"\r\nE             +  \"steps_mccycle(steps), \u003cclass 'str'\u003e details_json(details), \u003cclass 'str'\u003e \"\r\nE             +  \"details_uuid(details), \u003cclass 'str'\u003e pathmovers_json(pathmovers), \u003cclass \"\r\nE             +  \"'str'\u003e pathmovers_uuid(pathmovers), \u003cclass 'str'\u003e \"\r\nE             +  \"pathmovers_name(pathmovers), \u003cclass 'str'\u003e \"\r\nE             +  \"shootingpointselectors_json(shootingpointselectors), \u003cclass 'str'\u003e \"\r\nE             +  \"shootingpointselectors_uuid(shootingpointselectors), \u003cclass 'str'\u003e \"\r\nE             +  \"shootingpointselectors_name(shootingpointselectors), \u003cclass 'str'\u003e \"\r\nE             +  \"engines_json(engines), \u003cclass 'str'\u003e engines_uuid(engines), \u003cclass 'str'\u003e \"\r\nE             +  \"engines_name(engines), \u003cclass 'str'\u003e pathsimulators_json(pathsimulators), \"\r\nE             +  \"\u003cclass 'str'\u003e pathsimulators_uuid(pathsimulators), \u003cclass 'str'\u003e \"\r\nE             +  \"pathsimulators_name(pathsimulators), \u003cclass 'str'\u003e \"\r\nE             +  \"transitions_json(transitions), \u003cclass 'str'\u003e transitions_uuid(transitions), \"\r\nE             +  \"\u003cclass 'str'\u003e transitions_name(transitions), \u003cclass 'str'\u003e \"\r\nE             +  \"networks_json(networks), \u003cclass 'str'\u003e networks_uuid(networks), \u003cclass \"\r\nE             +  \"'str'\u003e networks_name(networks), \u003cclass 'str'\u003e schemes_json(schemes), \u003cclass \"\r\nE             +  \"'str'\u003e schemes_uuid(schemes), \u003cclass 'str'\u003e schemes_name(schemes), \u003cclass \"\r\nE             +  \"'str'\u003e interfacesets_json(interfacesets), \u003cclass 'str'\u003e \"\r\nE             +  \"interfacesets_uuid(interfacesets), \u003cclass 'str'\u003e \"\r\nE             +  \"interfacesets_name(interfacesets), \u003cclass 'str'\u003e msouters_json(msouters), \"\r\nE             +  \"\u003cclass 'str'\u003e msouters_uuid(msouters), \u003cclass 'str'\u003e \"\r\nE             +  \"msouters_name(msouters), \u003cclass 'str'\u003e volumes_json(volumes), \u003cclass 'str'\u003e \"\r\nE             +  \"volumes_uuid(volumes), \u003cclass 'str'\u003e volumes_name(volumes), \u003cclass 'str'\u003e \"\r\nE             +  \"ensembles_json(ensembles), \u003cclass 'str'\u003e ensembles_uuid(ensembles), \u003cclass \"\r\nE             +  \"'str'\u003e ensembles_name(ensembles), \u003cclass 'str'\u003e tag_json(tag), \u003cclass 'str'\u003e \"\r\nE             +  \"tag_uuid(tag), \u003cclass 'str'\u003e tag_name(tag), \u003cclass 'str'\u003e \"\r\nE             +  \"attributes_json(attributes), \u003cclass 'str'\u003e attributes_uuid(attributes), \"\r\nE             +  \"\u003cclass 'str'\u003e attributes_name(attributes), \u003cclass 'str'\u003e \"\r\nE             +  \"attributes_cache(attributes), \u003cclass 'str'\u003e snapshot0_uuid(snapshot0), int32 \"\r\nE             +  'snapshot0_index(snapshot0), float32 snapshot0_velocities(snapshot0, '\r\nE             +  'snapshot0n_atoms, snapshot0n_spatial), float32 '\r\nE             +  'snapshot0_coordinates(snapshot0, snapshot0n_atoms, snapshot0n_spatial), '\r\nE             +  \"\u003cclass 'str'\u003e snapshot0_engine(snapshot0)\",\r\nE             +  '    groups: '\r\n```\r\n\r\nwhich trips up the 'contents'. \r\n\r\nThere are 2 solutions to this: \r\n1) Fix the tests by not testing these first elements of the content\r\n2) Alter the stuff contents prints\r\n\r\n@dwhswenson do you have any preference ? ","author":{"url":"https://github.com/sroet","@type":"Person","name":"sroet"},"datePublished":"2022-08-30T12:34:59.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":1},"url":"https://github.com/71/openpathsampling-cli/issues/71"}