René's URL Explorer Experiment


Title: GitHub - open2c/pairtools: Extract 3D contacts (.pairs) from sequencing alignments · GitHub

Open Graph Title: GitHub - open2c/pairtools: Extract 3D contacts (.pairs) from sequencing alignments

X Title: GitHub - open2c/pairtools: Extract 3D contacts (.pairs) from sequencing alignments

Description: Extract 3D contacts (.pairs) from sequencing alignments - open2c/pairtools

Open Graph Description: Extract 3D contacts (.pairs) from sequencing alignments - open2c/pairtools

X Description: Extract 3D contacts (.pairs) from sequencing alignments - open2c/pairtools

Opengraph URL: https://github.com/open2c/pairtools

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:e3ee2dab-d4c4-8ec5-58e6-2eff65ac15c7
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idBEC2:179EF0:7DE77:B7D05:6A4D0142
html-safe-nonce9a19d94c64b864e730ef6dda49130f64a809a45e86ef89ff49082ffb6b547d5b
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJCRUMyOjE3OUVGMDo3REU3NzpCN0QwNTo2QTREMDE0MiIsInZpc2l0b3JfaWQiOiI0OTg3NDk0MDE3OTMzMzEyMzIyIiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac7c53a30a61e783632a940abaa01a242383f4bf68b5e647971bb3485b4d4f981c
hovercard-subject-tagrepository:82891794
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/open2c/pairtools
twitter:imagehttps://opengraph.githubassets.com/3c12515032d35d0aeab72289fabd0c53beeb4c6afff650f474ebf451e4658ff8/open2c/pairtools
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/3c12515032d35d0aeab72289fabd0c53beeb4c6afff650f474ebf451e4658ff8/open2c/pairtools
og:image:altExtract 3D contacts (.pairs) from sequencing alignments - open2c/pairtools
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None31e4db13a9e20081f2fac78f441659a6576e582bbb15e153f9c7fb6473aa29f5
turbo-cache-controlno-cache
go-importgithub.com/open2c/pairtools git https://github.com/open2c/pairtools.git
octolytics-dimension-user_id70977326
octolytics-dimension-user_loginopen2c
octolytics-dimension-repository_id82891794
octolytics-dimension-repository_nwoopen2c/pairtools
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id82891794
octolytics-dimension-repository_network_root_nwoopen2c/pairtools
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasefb70bd3c4b2bec429781b65419e912c66e2d5581
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/open2c/pairtools#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fopen2c%2Fpairtools
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fopen2c%2Fpairtools
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=open2c%2Fpairtools
Reloadhttps://github.com/open2c/pairtools
Reloadhttps://github.com/open2c/pairtools
Reloadhttps://github.com/open2c/pairtools
Please reload this pagehttps://github.com/open2c/pairtools
open2c https://github.com/open2c
pairtoolshttps://github.com/open2c/pairtools
Notifications https://github.com/login?return_to=%2Fopen2c%2Fpairtools
Fork 38 https://github.com/login?return_to=%2Fopen2c%2Fpairtools
Star 133 https://github.com/login?return_to=%2Fopen2c%2Fpairtools
Code https://github.com/open2c/pairtools
Issues 48 https://github.com/open2c/pairtools/issues
Pull requests 7 https://github.com/open2c/pairtools/pulls
Discussions https://github.com/open2c/pairtools/discussions
Actions https://github.com/open2c/pairtools/actions
Projects https://github.com/open2c/pairtools/projects
Security and quality 0 https://github.com/open2c/pairtools/security
Insights https://github.com/open2c/pairtools/pulse
Code https://github.com/open2c/pairtools
Issues https://github.com/open2c/pairtools/issues
Pull requests https://github.com/open2c/pairtools/pulls
Discussions https://github.com/open2c/pairtools/discussions
Actions https://github.com/open2c/pairtools/actions
Projects https://github.com/open2c/pairtools/projects
Security and quality https://github.com/open2c/pairtools/security
Insights https://github.com/open2c/pairtools/pulse
https://github.com/open2c/pairtools
Brancheshttps://github.com/open2c/pairtools/branches
Tagshttps://github.com/open2c/pairtools/tags
https://github.com/open2c/pairtools/branches
https://github.com/open2c/pairtools/tags
742 Commitshttps://github.com/open2c/pairtools/commits/master/
https://github.com/open2c/pairtools/commits/master/
.github/workflowshttps://github.com/open2c/pairtools/tree/master/.github/workflows
.github/workflowshttps://github.com/open2c/pairtools/tree/master/.github/workflows
dochttps://github.com/open2c/pairtools/tree/master/doc
dochttps://github.com/open2c/pairtools/tree/master/doc
pairtoolshttps://github.com/open2c/pairtools/tree/master/pairtools
pairtoolshttps://github.com/open2c/pairtools/tree/master/pairtools
testshttps://github.com/open2c/pairtools/tree/master/tests
testshttps://github.com/open2c/pairtools/tree/master/tests
.flake8https://github.com/open2c/pairtools/blob/master/.flake8
.flake8https://github.com/open2c/pairtools/blob/master/.flake8
.gitignorehttps://github.com/open2c/pairtools/blob/master/.gitignore
.gitignorehttps://github.com/open2c/pairtools/blob/master/.gitignore
CHANGES.mdhttps://github.com/open2c/pairtools/blob/master/CHANGES.md
CHANGES.mdhttps://github.com/open2c/pairtools/blob/master/CHANGES.md
LICENSEhttps://github.com/open2c/pairtools/blob/master/LICENSE
LICENSEhttps://github.com/open2c/pairtools/blob/master/LICENSE
MANIFEST.inhttps://github.com/open2c/pairtools/blob/master/MANIFEST.in
MANIFEST.inhttps://github.com/open2c/pairtools/blob/master/MANIFEST.in
Makefilehttps://github.com/open2c/pairtools/blob/master/Makefile
Makefilehttps://github.com/open2c/pairtools/blob/master/Makefile
README.mdhttps://github.com/open2c/pairtools/blob/master/README.md
README.mdhttps://github.com/open2c/pairtools/blob/master/README.md
pyproject.tomlhttps://github.com/open2c/pairtools/blob/master/pyproject.toml
pyproject.tomlhttps://github.com/open2c/pairtools/blob/master/pyproject.toml
pytest.inihttps://github.com/open2c/pairtools/blob/master/pytest.ini
pytest.inihttps://github.com/open2c/pairtools/blob/master/pytest.ini
readthedocs.ymlhttps://github.com/open2c/pairtools/blob/master/readthedocs.yml
readthedocs.ymlhttps://github.com/open2c/pairtools/blob/master/readthedocs.yml
setup.pyhttps://github.com/open2c/pairtools/blob/master/setup.py
setup.pyhttps://github.com/open2c/pairtools/blob/master/setup.py
READMEhttps://github.com/open2c/pairtools
Code of conducthttps://github.com/open2c/pairtools
MIT licensehttps://github.com/open2c/pairtools
https://github.com/open2c/pairtools#pairtools
http://pairtools.readthedocs.org/en/latest/
https://travis-ci.org/mirnylab/pairtools
https://bit.ly/2UaOpAe
https://doi.org/10.5281/zenodo.1490831
https://github.com/open2c/pairtools#process-hi-c-pairs-with-pairtools
pairtools tutorialshttps://pairtools.readthedocs.io/en/latest/examples/pairtools_walkthrough.html
quick examplehttps://github.com/open2c/pairtools#quick-example
documentationhttp://pairtools.readthedocs.io
https://github.com/open2c/pairtools#data-formats
.pairshttps://github.com/4dn-dcic/pairix/blob/master/pairs_format_specification.md
4D Nucleome Consortiumhttps://www.4dnucleome.org/
.pairsam formathttps://pairtools.readthedocs.io/en/latest/formats.html#pairsam
pairtools format specificationhttps://pairtools.readthedocs.io/en/latest/formats.html#extra-columns
https://github.com/open2c/pairtools#installation
the requirements section in the pyproject.tomlhttps://github.com/open2c/pairtools/blob/main/pyproject.toml
Anacondahttps://www.continuum.io/downloads
condahttp://conda.pydata.org/miniconda.html
biocondahttps://bioconda.github.io/index.html
https://github.com/open2c/pairtools#quick-example
https://github.com/open2c/pairtools#pipelines
distillerhttps://github.com/open2c/distiller-nf
nextflowhttps://www.nextflow.io/
https://github.com/open2c/pairtools#tools
https://github.com/open2c/pairtools#contributing
Pull requestshttps://akrabat.com/the-beginners-guide-to-contributing-to-a-github-project/
https://github.com/open2c/pairtools#citing-pairtools
https://doi.org/10.1101/2023.02.13.528389https://doi.org/10.1101/2023.02.13.528389
https://github.com/open2c/pairtools#license
python https://github.com/topics/python
bioinformatics https://github.com/topics/bioinformatics
ngs https://github.com/topics/ngs
hi-c https://github.com/topics/hi-c
3d-genome https://github.com/topics/3d-genome
file-formatter https://github.com/topics/file-formatter
pairs-file https://github.com/topics/pairs-file
Readme https://github.com/open2c/pairtools#readme-ov-file
MIT license https://github.com/open2c/pairtools#MIT-1-ov-file
Code of conduct https://github.com/open2c/pairtools#coc-ov-file
Please reload this pagehttps://github.com/open2c/pairtools
Activityhttps://github.com/open2c/pairtools/activity
Custom propertieshttps://github.com/open2c/pairtools/custom-properties
38 forkshttps://github.com/open2c/pairtools/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fopen2c%2Fpairtools&report=open2c+%28user%29
Releases 14https://github.com/open2c/pairtools/releases
v1.1.3 Latest Jan 31, 2025 https://github.com/open2c/pairtools/releases/tag/v1.1.3
+ 13 releaseshttps://github.com/open2c/pairtools/releases
Packages 0https://github.com/orgs/open2c/packages?repo_name=pairtools
Please reload this pagehttps://github.com/open2c/pairtools
Please reload this pagehttps://github.com/open2c/pairtools
Contributorshttps://github.com/open2c/pairtools/graphs/contributors
Please reload this pagehttps://github.com/open2c/pairtools
Python 96.8% https://github.com/open2c/pairtools/search?l=python
Cython 3.0% https://github.com/open2c/pairtools/search?l=cython
Makefile 0.2% https://github.com/open2c/pairtools/search?l=makefile
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.