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Title: GitHub - omics-datascience/BioAPI: A powerful abstraction of gene databases · GitHub

Open Graph Title: GitHub - omics-datascience/BioAPI: A powerful abstraction of gene databases

X Title: GitHub - omics-datascience/BioAPI: A powerful abstraction of gene databases

Description: A powerful abstraction of gene databases . Contribute to omics-datascience/BioAPI development by creating an account on GitHub.

Open Graph Description: A powerful abstraction of gene databases . Contribute to omics-datascience/BioAPI development by creating an account on GitHub.

X Description: A powerful abstraction of gene databases . Contribute to omics-datascience/BioAPI development by creating an account on GitHub.

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https://github.com/omics-datascience/BioAPI#bioapi
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BioAPIhttps://github.com/omics-datascience/BioAPI#bioapi
Integrated databaseshttps://github.com/omics-datascience/BioAPI#integrated-databases
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Genes symbols validatorhttps://github.com/omics-datascience/BioAPI#genes-symbols-validator
Genes symbols finderhttps://github.com/omics-datascience/BioAPI#genes-symbols-finder
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Gene Groupshttps://github.com/omics-datascience/BioAPI#gene-groups
Genes of a metabolic pathwayhttps://github.com/omics-datascience/BioAPI#genes-of-a-metabolic-pathway
Metabolic pathways from different geneshttps://github.com/omics-datascience/BioAPI#metabolic-pathways-from-different-genes
Gene expressionhttps://github.com/omics-datascience/BioAPI#gene-expression
Therapies and actionable genes in cancerhttps://github.com/omics-datascience/BioAPI#therapies-and-actionable-genes-in-cancer
Gene Ontology terms related to a list of geneshttps://github.com/omics-datascience/BioAPI#gene-ontology-terms-related-to-a-list-of-genes
Gene Ontology terms related to another specific termhttps://github.com/omics-datascience/BioAPI#gene-ontology-terms-related-to-another-specific-term
Cancer related drugshttps://github.com/omics-datascience/BioAPI#cancer-related-drugs
Predicted functional associations networkhttps://github.com/omics-datascience/BioAPI#predicted-functional-associations-network
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Error Responseshttps://github.com/omics-datascience/BioAPI#error-responses
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Run Flask dev serverhttps://github.com/omics-datascience/BioAPI#run-flask-dev-server
Testshttps://github.com/omics-datascience/BioAPI#tests
https://github.com/omics-datascience/BioAPI#integrated-databases
HUGO Gene Nomenclature Committeehttps://www.genenames.org/
ENSEMBLhttp://www.ensembl.org/biomart/martview
RefSeqhttps://www.ncbi.nlm.nih.gov/refseq/
GeneSummaryhttps://bioconductor.org/packages/release/data/annotation/html/GeneSummary.html
CIViChttps://civicdb.org/welcome
ConsensusPathDBhttp://cpdb.molgen.mpg.de/
Genotype-Tissue Expression (GTEx)https://gtexportal.org/home/
GTEx Analysis V8 (dbGaP Accession phs000424.v8.p2)https://gtexportal.org/home/datasets#datasetDiv1
OncoKBhttps://www.oncokb.org/
Levels of Evidence systemhttps://www.oncokb.org/levels
Gene Ontology (GO)http://geneontology.org/
Pharmacogenomics Knowledge Base (PharmGKB)https://www.pharmgkb.org/
STRINGhttps://string-db.org/
DrugBankhttps://go.drugbank.com/
https://github.com/omics-datascience/BioAPI#services-included-in-bioapi
https://github.com/omics-datascience/BioAPI#genes-symbols-validator
https://bioapi.multiomix.org/gene-symbolshttps://bioapi.multiomix.org/gene-symbols
https://github.com/omics-datascience/BioAPI#genes-symbols-finder
https://bioapi.multiomix.org/gene-symbols-finder/?limit=50&query=BRChttps://bioapi.multiomix.org/gene-symbols-finder/?limit=50&query=BRC
https://github.com/omics-datascience/BioAPI#genes-information
Biotype section of the Ensembl documentationhttps://vega.archive.ensembl.org/info/about/gene_and_transcript_types.html
https://bioapi.multiomix.org/information-of-geneshttps://bioapi.multiomix.org/information-of-genes
https://github.com/omics-datascience/BioAPI#gene-groups
HGNC documentationhttps://www.genenames.org/download/statistics-and-files/
HUGO Gene Nomenclature Committee websitehttps://www.genenames.org/data/genegroup/#!/
https://bioapi.multiomix.org/genes-of-its-group/ENSG00000146648https://bioapi.multiomix.org/genes-of-its-group/ENSG00000146648
https://github.com/omics-datascience/BioAPI#genes-of-a-metabolic-pathway
kegghttps://www.genome.jp/kegg/
biocartahttps://maayanlab.cloud/Harmonizome/resource/Biocarta
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netpathhttps://classic.wikipathways.org/index.php/Portal:NetPath
pidhttps://github.com/NCIP/pathway-interaction-database
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smpdbhttps://www.smpdb.ca/
signalinkhttp://signalink.org/
wikipathwayshttps://www.wikipathways.org/index.php/WikiPathways
https://bioapi.multiomix.org/pathway-genes/kegg/hsa00740https://bioapi.multiomix.org/pathway-genes/kegg/hsa00740
https://github.com/omics-datascience/BioAPI#metabolic-pathways-from-different-genes
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documentation of the OncoKB databasehttps://www.oncokb.org/therapeutic-levels
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OncoTree nomenclaturehttp://oncotree.mskcc.org/
Sanger Cancer Gene Censushttps://www.sanger.ac.uk/data/cancer-gene-census/
Vogelstein et al. (2013)http://science.sciencemag.org/content/339/6127/1546.full
Suehnholz et al. Cancer Discovery 2023https://aacrjournals.org/cancerdiscovery/article/doi/10.1158/2159-8290.CD-23-0467/729589/Quantifying-the-Expanding-Landscape-of-Clinical
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g:SCShttps://biit.cs.ut.ee/gprofiler/page/docs#significance_threhshold
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PharmGKB documentationhttps://www.pharmgkb.org/page/drugLabelLegend
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https://github.com/omics-datascience/BioAPI#run-flask-dev-server
DEPLOYING.mdhttps://github.com/omics-datascience/BioAPI/blob/master/DEPLOYING.md
https://github.com/omics-datascience/BioAPI#tests
bioapi.multiomix.org/https://bioapi.multiomix.org/
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