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Title: GitHub - multipaths/DiffuPath: A Python package for analyzing harmonized biological networks through diffusion algorithms

Open Graph Title: GitHub - multipaths/DiffuPath: A Python package for analyzing harmonized biological networks through diffusion algorithms

X Title: GitHub - multipaths/DiffuPath: A Python package for analyzing harmonized biological networks through diffusion algorithms

Description: A Python package for analyzing harmonized biological networks through diffusion algorithms - multipaths/DiffuPath

Open Graph Description: A Python package for analyzing harmonized biological networks through diffusion algorithms - multipaths/DiffuPath

X Description: A Python package for analyzing harmonized biological networks through diffusion algorithms - multipaths/DiffuPath

Opengraph URL: https://github.com/multipaths/DiffuPath

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	https://diffupath.readthedocs.io/en/latest/
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	https://doi.org/10.5281/zenodo.3825853
	https://github.com/multipaths/diffupath#introduction---
DiffuPy	https://github.com/multipaths/DiffuPy/
Biological Expression Language (BEL)	https://biological-expression-language.github.io
PathMe	https://github.com/PathwayMerger/PathMe/
[1]	https://github.com/multipaths/diffupath#id22
[2]	https://github.com/multipaths/diffupath#id23
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MultiPaths: a python framework for analyzing multi-layer biological networks using diffusion algorithms	https://doi.org/10.1093/bioinformatics/btaa1069
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GitHub	https://github.com/multipaths/diffupath
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[12]	https://github.com/multipaths/diffupath#id33
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[5]	https://github.com/multipaths/diffupath#id26
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sample networks	https://github.com/multipaths/DiffuPy/tree/master/examples/networks
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heatmap view of the mapping (see views)	https://github.com/multipaths/DiffuPath/blob/master/docs/source/views.rst
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	https://github.com/multipaths/diffupath#output-format
	https://github.com/multipaths/diffupath#disclaimer
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[1]	https://github.com/multipaths/diffupath#id1
PathMe: Merging and exploring mechanistic pathway knowledge	https://www.biorxiv.org/content/10.1101/451625v1
[2]	https://github.com/multipaths/diffupath#id2
Integration of Structured Biological Data Sources using Biological Expression Language	https://doi.org/10.1101/631812
[3]	https://github.com/multipaths/diffupath#id11
Uncovering disease-disease relationships through the incomplete interactome	https://github.com/multipaths/doi.org/10.1126/science.1257601
[4]	https://github.com/multipaths/diffupath#id12
DrugBank 5.0: a major update to the DrugBank database for 2018	https://doi.org/10.1093/nar/gkx1037
[5]	https://github.com/multipaths/diffupath#id13
Gene ontology: tool for the unification of biology	https://doi.org/10.1038/75556
[6]	https://github.com/multipaths/diffupath#id14
Human symptoms–disease network	https://doi.org/10.1038/ncomms5212
[7]	https://github.com/multipaths/diffupath#id15
KEGG: new perspectives on genomes, pathways, diseases and drugs.	https://doi.org/10.1093/nar/gkw1092
[8]	https://github.com/multipaths/diffupath#id16
miRTarBase 2020: updates to the experimentally validated microRNA–target interaction database	https://doi.org/10.1093/nar/gkz896
[9]	https://github.com/multipaths/diffupath#id17
The Reactome Pathway Knowledgebase	https://doi.org/10.1093/nar/gkv1351
[10]	https://github.com/multipaths/diffupath#id18
The SIDER database of drugs and side effects	https://doi.org/10.1093/nar/gkv1075
[11]	https://github.com/multipaths/diffupath#id19
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research	https://doi.org/10.1093/nar/gkx1064
[12]	https://github.com/multipaths/diffupath#id9
PyBEL: a Computational Framework for Biological Expression Language	https://doi.org/10.1093/bioinformatics/btx660
diffupath.readthedocs.io/en/latest	https://diffupath.readthedocs.io/en/latest
systems-biology	https://github.com/topics/systems-biology
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network-analysis	https://github.com/topics/network-analysis
diffusion-network	https://github.com/topics/diffusion-network
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Readme	https://github.com/multipaths/diffupath#readme-ov-file
Apache-2.0 license	https://github.com/multipaths/diffupath#Apache-2.0-1-ov-file
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First release Latest May 13, 2020	https://github.com/multipaths/DiffuPath/releases/tag/0.0.3
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