René's URL Explorer Experiment


Title: GitHub - morphonets/SNT: The framework for quantification of neuronal anatomy

Open Graph Title: GitHub - morphonets/SNT: The framework for quantification of neuronal anatomy

X Title: GitHub - morphonets/SNT: The framework for quantification of neuronal anatomy

Description: The framework for quantification of neuronal anatomy - GitHub - morphonets/SNT: The framework for quantification of neuronal anatomy

Open Graph Description: The framework for quantification of neuronal anatomy - GitHub - morphonets/SNT: The framework for quantification of neuronal anatomy

X Description: The framework for quantification of neuronal anatomy - GitHub - morphonets/SNT: The framework for quantification of neuronal anatomy

Opengraph URL: https://github.com/morphonets/SNT

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:5b675251-b5e4-0071-4e53-e51eb0529c37
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idD412:1E881D:84500:AFD88:6969C38B
html-safe-nonce0b08cd0106bb7abb9b60ed855fb772c026b02fddb47d41b2bd9ab8ac6f0c67ab
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJENDEyOjFFODgxRDo4NDUwMDpBRkQ4ODo2OTY5QzM4QiIsInZpc2l0b3JfaWQiOiI4MTczMjU3MDE0NDAyMjA0NTU1IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac1be963638f588944eb8834b48242b48c7c813ef1a29dc30c3bd0665c5d4301b8
hovercard-subject-tagrepository:221831995
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/morphonets/SNT
twitter:imagehttps://opengraph.githubassets.com/806a03e0364bef681f1bef090f8818f2fca7c41a91a25199dce305439c2af0f1/morphonets/SNT
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/806a03e0364bef681f1bef090f8818f2fca7c41a91a25199dce305439c2af0f1/morphonets/SNT
og:image:altThe framework for quantification of neuronal anatomy - GitHub - morphonets/SNT: The framework for quantification of neuronal anatomy
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Noneacedec8b5f975d9e3d494ddd8f949b0b8a0de59d393901e26f73df9dcba80056
turbo-cache-controlno-preview
go-importgithub.com/morphonets/SNT git https://github.com/morphonets/SNT.git
octolytics-dimension-user_id54406069
octolytics-dimension-user_loginmorphonets
octolytics-dimension-repository_id221831995
octolytics-dimension-repository_nwomorphonets/SNT
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id18536856
octolytics-dimension-repository_parent_nwofiji/SNT
octolytics-dimension-repository_network_root_id18536856
octolytics-dimension-repository_network_root_nwofiji/SNT
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release83c08c21cdda978090dc44364b71aa5bc6dcea79
ui-targetcanary-1
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/morphonets/SNT#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmorphonets%2FSNT
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmorphonets%2FSNT
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=morphonets%2FSNT
Reloadhttps://github.com/morphonets/SNT
Reloadhttps://github.com/morphonets/SNT
Reloadhttps://github.com/morphonets/SNT
morphonets https://github.com/morphonets
SNThttps://github.com/morphonets/SNT
fiji/SNThttps://github.com/fiji/SNT
Notifications https://github.com/login?return_to=%2Fmorphonets%2FSNT
Fork 19 https://github.com/login?return_to=%2Fmorphonets%2FSNT
Star 55 https://github.com/login?return_to=%2Fmorphonets%2FSNT
imagej.net/plugins/snthttps://imagej.net/plugins/snt
GPL-3.0 license https://github.com/morphonets/SNT/blob/main/LICENSE.txt
55 stars https://github.com/morphonets/SNT/stargazers
31 forks https://github.com/morphonets/SNT/forks
Branches https://github.com/morphonets/SNT/branches
Tags https://github.com/morphonets/SNT/tags
Activity https://github.com/morphonets/SNT/activity
Star https://github.com/login?return_to=%2Fmorphonets%2FSNT
Notifications https://github.com/login?return_to=%2Fmorphonets%2FSNT
Code https://github.com/morphonets/SNT
Issues 14 https://github.com/morphonets/SNT/issues
Pull requests 5 https://github.com/morphonets/SNT/pulls
Discussions https://github.com/morphonets/SNT/discussions
Actions https://github.com/morphonets/SNT/actions
Projects 0 https://github.com/morphonets/SNT/projects
Security Uh oh! There was an error while loading. Please reload this page. https://github.com/morphonets/SNT/security
Please reload this pagehttps://github.com/morphonets/SNT
Insights https://github.com/morphonets/SNT/pulse
Code https://github.com/morphonets/SNT
Issues https://github.com/morphonets/SNT/issues
Pull requests https://github.com/morphonets/SNT/pulls
Discussions https://github.com/morphonets/SNT/discussions
Actions https://github.com/morphonets/SNT/actions
Projects https://github.com/morphonets/SNT/projects
Security https://github.com/morphonets/SNT/security
Insights https://github.com/morphonets/SNT/pulse
Brancheshttps://github.com/morphonets/SNT/branches
Tagshttps://github.com/morphonets/SNT/tags
https://github.com/morphonets/SNT/branches
https://github.com/morphonets/SNT/tags
4,260 Commitshttps://github.com/morphonets/SNT/commits/main/
https://github.com/morphonets/SNT/commits/main/
.githubhttps://github.com/morphonets/SNT/tree/main/.github
.githubhttps://github.com/morphonets/SNT/tree/main/.github
.settingshttps://github.com/morphonets/SNT/tree/main/.settings
.settingshttps://github.com/morphonets/SNT/tree/main/.settings
docshttps://github.com/morphonets/SNT/tree/main/docs
docshttps://github.com/morphonets/SNT/tree/main/docs
macroshttps://github.com/morphonets/SNT/tree/main/macros
macroshttps://github.com/morphonets/SNT/tree/main/macros
notebookshttps://github.com/morphonets/SNT/tree/main/notebooks
notebookshttps://github.com/morphonets/SNT/tree/main/notebooks
srchttps://github.com/morphonets/SNT/tree/main/src
srchttps://github.com/morphonets/SNT/tree/main/src
.gitignorehttps://github.com/morphonets/SNT/blob/main/.gitignore
.gitignorehttps://github.com/morphonets/SNT/blob/main/.gitignore
.gitignore.masterhttps://github.com/morphonets/SNT/blob/main/.gitignore.master
.gitignore.masterhttps://github.com/morphonets/SNT/blob/main/.gitignore.master
.gitpod.dockerfilehttps://github.com/morphonets/SNT/blob/main/.gitpod.dockerfile
.gitpod.dockerfilehttps://github.com/morphonets/SNT/blob/main/.gitpod.dockerfile
.gitpod.ymlhttps://github.com/morphonets/SNT/blob/main/.gitpod.yml
.gitpod.ymlhttps://github.com/morphonets/SNT/blob/main/.gitpod.yml
CITATION.cffhttps://github.com/morphonets/SNT/blob/main/CITATION.cff
CITATION.cffhttps://github.com/morphonets/SNT/blob/main/CITATION.cff
LICENSE.txthttps://github.com/morphonets/SNT/blob/main/LICENSE.txt
LICENSE.txthttps://github.com/morphonets/SNT/blob/main/LICENSE.txt
NOTES.mdhttps://github.com/morphonets/SNT/blob/main/NOTES.md
NOTES.mdhttps://github.com/morphonets/SNT/blob/main/NOTES.md
README.mdhttps://github.com/morphonets/SNT/blob/main/README.md
README.mdhttps://github.com/morphonets/SNT/blob/main/README.md
pom.xmlhttps://github.com/morphonets/SNT/blob/main/pom.xml
pom.xmlhttps://github.com/morphonets/SNT/blob/main/pom.xml
READMEhttps://github.com/morphonets/SNT
GPL-3.0 licensehttps://github.com/morphonets/SNT
https://camo.githubusercontent.com/96e63e3636339ddaf2cd790d7e439a12bdca5417265678405083aa8d176513e4/68747470733a2f2f696d6167656a2e6e65742f6d656469612f69636f6e732f736e742e706e67
https://github.com/morphonets/SNT#the-framework-for-quantification-of-neuronal-anatomy
https://rdcu.be/c59MD
https://doi.org/10.1101/2020.07.13.179325
https://zenodo.org/badge/latestdoi/221831995
https://github.com/morphonets/SNT/blob/master/LICENSE.txt
https://github.com/morphonets/SNT/actions/workflows/build.yml
https://gitpod.io/#https://github.com/fiji/SNT
https://www.codefactor.io/repository/github/morphonets/snt
https://forum.image.sc/tags/snt
https://github.com/morphonets/SNT/issues
https://github.com/morphonets/SNT/issues
Features https://github.com/morphonets/SNT#features
Installation https://github.com/morphonets/SNT#installation
Contributing https://github.com/morphonets/SNT#contributing
Documentation https://imagej.net/SNT
API https://morphonets.github.io/SNT/
Support https://forum.image.sc/tag/SNT
https://github.com/morphonets/SNT#----------features------------------installation------------------contributing-------------------documentation------------------api------------------support------
Fijihttps://imagej.net/Fiji
PySNThttps://github.com/morphonets/pysnt
SNT's publicationhttps://doi.org/10.1038/s41592-021-01105-7
technical noteshttps://github.com/morphonets/SNT/blob/main/NOTES.md
https://github.com/morphonets/SNT#overview
https://www.nature.com/articles/s41592-021-01105-7
https://github.com/morphonets/SNT#features
showcase galleryhttps://imagej.net/plugins/snt/#overview
https://github.com/morphonets/SNT#tracing
ImgLib2https://imagej.net/libs/imglib2/
LabKithttps://github.com/juglab/labkit-ui
Trainable Weka segmentationhttps://github.com/fiji/Trainable_Segmentation
https://github.com/morphonets/SNT#analysis
metricshttps://imagej.net/plugins/snt/metrics
MouseLighthttps://ml-neuronbrowser.janelia.org/
FlyCircuithttp://www.flycircuit.tw
Insect Brain Databasehttps://insectbraindb.org/app/
MouseLighthttps://ml-neuronbrowser.janelia.org/
NeuroMorphohttp://neuromorpho.org/
Virtual Fly Brainhttps://v2.virtualflybrain.org/
Convex hullhttps://imagej.net/plugins/snt/analysis#convex-hull-analysis
Delineation analyseshttps://imagej.net/plugins/snt/walkthroughs#delineation-analysis
Graph theory-based analyseshttps://imagej.net/plugins/snt/analysis#graph-based-analysis
Persistent homology-based analyseshttps://imagej.net/plugins/snt/analysis#persistence-homology
Growth analysishttps://imagej.net/plugins/snt/analysis#growth-analysis
Root angle analysishttps://imagej.net/plugins/snt/analysis#root-angle-analysis
Shollhttps://github.com/morphonets/SNT/blob/main/NOTES.md
Horton-Strahlerhttps://imagej.net/plugins/snt/analysis#strahler-analysis
Semantic Segmentationhttps://imagej.net/plugins/snt/machine-learning
https://github.com/morphonets/SNT#visualization
Reconstruction Viewerhttps://imagej.net/SNT:_Reconstruction_Viewer
zebrafishhttps://fishatlas.neuro.mpg.de/
sciviewhttps://github.com/scenerygraphics/sciview
https://github.com/morphonets/SNT#scripting
pyimagejhttps://github.com/imagej/pyimagej
documentationhttps://imagej.net/SNT:_Scripting
notebookshttps://github.com/morphonets/SNT/tree/master/notebooks
end-to-end exampleshttps://github.com/morphonets/SNTmanuscript
https://github.com/morphonets/SNT#modeling
Cortex3D (Cx3D)https://github.com/morphonets/cx3d
sciviewhttps://docs.scenery.graphics/sciview/
Cx3Dhttps://github.com/morphonets/cx3d
sciviewhttps://docs.scenery.graphics/sciview/
https://github.com/morphonets/SNT#compatibility
Simple Neurite Tracerhttps://github.com/fiji/SNT
TrakEM2https://github.com/trakem2/TrakEM2
ITKhttps://imagej.net/SNT:_Tubular_Geodesics
legacy pluginshttps://github.com/morphonets/SNT/blob/main/NOTES.md
https://github.com/morphonets/SNT#installation
Fijihttps://imagej.net/Fiji
update sitehttps://imagej.net/Update_Sites
sciviewhttps://docs.scenery.graphics/sciview/
documentationhttps://imagej.net/SNT
https://github.com/morphonets/SNT#developing
https://github.com/morphonets/SNT#on-the-cloud
Gitpodhttps://gitpod.io
https://gitpod.io/#https://github.com/morphonets/SNT
https://github.com/morphonets/SNT#locally
Eclipsehttps://www.eclipse.org/downloads/packages/
IntelliJhttps://www.jetbrains.com/idea/download/
NetBeanshttps://netbeans.apache.org/download/index.html
StartImageJAndSNTDemohttps://github.com/morphonets/SNT/blob/main/src/test/java/sc/fiji/snt/demo/StartImageJAndSNTDemo.java
https://private-user-images.githubusercontent.com/2439948/385273531-1679e954-dc89-4061-bfa2-b4a10da4f0da.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.kC4bmkXzgE0x3QACHbYMcmhnVdUb05ErZUTfA-nhRFs
StartImageJAndSNTDemo.main()https://github.com/morphonets/SNT/blob/main/src/test/java/sc/fiji/snt/demo/StartImageJAndSNTDemo.java
https://github.com/morphonets/SNT#useful-resources-to-start-hacking-snt
Test demoshttps://github.com/morphonets/SNT/blob/main/src/test/java/sc/fiji/snt/demo
JUnit testshttps://github.com/morphonets/SNT/blob/main/src/test/java/sc/fiji/snt
Script templateshttps://github.com/morphonets/SNT/blob/main/src/main/resources/script_templates/Neuroanatomy
PySNThttps://github.com/morphonets/pysnt
Script templateshttps://github.com/morphonets/SNT/blob/main/src/main/resources/script_templates/Neuroanatomy
Examples from the SNT manuscripthttps://github.com/morphonets/SNTmanuscript
Examples from I2K tutorialshttps://github.com/morphonets/i2k2020
Snippets across the forumhttps://forum.image.sc/tag/snt
https://github.com/morphonets/SNT#contributing
issueshttps://github.com/morphonets/SNT/issues
pull requestshttps://github.com/morphonets/SNT/pulls
forumhttps://forum.image.sc/tag/snt
https://github.com/morphonets/SNT#thanks-to-all-contributors
https://github.com/morphonets/SNT/graphs/contributors
imagej.net/plugins/snthttps://imagej.net/plugins/snt
imagej https://github.com/topics/imagej
imagej2 https://github.com/topics/imagej2
fiji https://github.com/topics/fiji
scijava https://github.com/topics/scijava
neuroscience https://github.com/topics/neuroscience
neurons https://github.com/topics/neurons
neuroanatomy-toolbox https://github.com/topics/neuroanatomy-toolbox
janelia https://github.com/topics/janelia
neuron-reconstruction https://github.com/topics/neuron-reconstruction
Readme https://github.com/morphonets/SNT#readme-ov-file
GPL-3.0 license https://github.com/morphonets/SNT#GPL-3.0-1-ov-file
Please reload this pagehttps://github.com/morphonets/SNT
Activityhttps://github.com/morphonets/SNT/activity
Custom propertieshttps://github.com/morphonets/SNT/custom-properties
55 starshttps://github.com/morphonets/SNT/stargazers
5 watchinghttps://github.com/morphonets/SNT/watchers
19 forkshttps://github.com/morphonets/SNT/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fmorphonets%2FSNT&report=morphonets+%28user%29
Releases 60https://github.com/morphonets/SNT/releases
SNT-4.2.1 Latest Jan 18, 2024 https://github.com/morphonets/SNT/releases/tag/SNT-4.2.1
+ 59 releaseshttps://github.com/morphonets/SNT/releases
Please reload this pagehttps://github.com/morphonets/SNT
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.