René's URL Explorer Experiment


Title: GitHub - ml4bio/SCMBench · GitHub

Open Graph Title: GitHub - ml4bio/SCMBench

X Title: GitHub - ml4bio/SCMBench

Description: Contribute to ml4bio/SCMBench development by creating an account on GitHub.

Open Graph Description: Contribute to ml4bio/SCMBench development by creating an account on GitHub.

X Description: Contribute to ml4bio/SCMBench development by creating an account on GitHub.

Opengraph URL: https://github.com/ml4bio/SCMBench

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:ba993b23-5c71-fb81-cc87-d17425207eca
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id8798:2B8D1B:15C51EA:1E67C62:6A4C05E7
html-safe-noncedf2b0e5d2431fccdc69c46fea3db5bf89f1671e16dc5b21b089070eb4720d4fc
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4Nzk4OjJCOEQxQjoxNUM1MUVBOjFFNjdDNjI6NkE0QzA1RTciLCJ2aXNpdG9yX2lkIjoiMjA4NTUyMzY4NzA2NzA5MjQ1NSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac228868638269981973b14b9035128bfbd223dff523b4bacad6979f46ac72a906
hovercard-subject-tagrepository:986101933
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/ml4bio/SCMBench
twitter:imagehttps://opengraph.githubassets.com/fe24878346a946837addce870444447c5d528911c7e1a2f904bd2a87c85a9f09/ml4bio/SCMBench
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/fe24878346a946837addce870444447c5d528911c7e1a2f904bd2a87c85a9f09/ml4bio/SCMBench
og:image:altContribute to ml4bio/SCMBench development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None940b0dbb4d0fe72558ee760b2ff0f25a504383fdfe404f3a7691ec853b8dc17f
turbo-cache-controlno-cache
go-importgithub.com/ml4bio/SCMBench git https://github.com/ml4bio/SCMBench.git
octolytics-dimension-user_id60998233
octolytics-dimension-user_loginml4bio
octolytics-dimension-repository_id986101933
octolytics-dimension-repository_nwoml4bio/SCMBench
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id986101933
octolytics-dimension-repository_network_root_nwoml4bio/SCMBench
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releaseb0267d17ea43e55446153a7e2c60bb6ac3cffd6b
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/ml4bio/SCMBench#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fml4bio%2FSCMBench
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fml4bio%2FSCMBench
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=ml4bio%2FSCMBench
Reloadhttps://github.com/ml4bio/SCMBench
Reloadhttps://github.com/ml4bio/SCMBench
Reloadhttps://github.com/ml4bio/SCMBench
Please reload this pagehttps://github.com/ml4bio/SCMBench
ml4bio https://github.com/ml4bio
SCMBenchhttps://github.com/ml4bio/SCMBench
Notifications https://github.com/login?return_to=%2Fml4bio%2FSCMBench
Fork 0 https://github.com/login?return_to=%2Fml4bio%2FSCMBench
Star 2 https://github.com/login?return_to=%2Fml4bio%2FSCMBench
Code https://github.com/ml4bio/SCMBench
Issues 0 https://github.com/ml4bio/SCMBench/issues
Pull requests 0 https://github.com/ml4bio/SCMBench/pulls
Actions https://github.com/ml4bio/SCMBench/actions
Projects https://github.com/ml4bio/SCMBench/projects
Security and quality 0 https://github.com/ml4bio/SCMBench/security
Insights https://github.com/ml4bio/SCMBench/pulse
Code https://github.com/ml4bio/SCMBench
Issues https://github.com/ml4bio/SCMBench/issues
Pull requests https://github.com/ml4bio/SCMBench/pulls
Actions https://github.com/ml4bio/SCMBench/actions
Projects https://github.com/ml4bio/SCMBench/projects
Security and quality https://github.com/ml4bio/SCMBench/security
Insights https://github.com/ml4bio/SCMBench/pulse
https://github.com/ml4bio/SCMBench
Brancheshttps://github.com/ml4bio/SCMBench/branches
Tagshttps://github.com/ml4bio/SCMBench/tags
https://github.com/ml4bio/SCMBench/branches
https://github.com/ml4bio/SCMBench/tags
53 Commitshttps://github.com/ml4bio/SCMBench/commits/main/
https://github.com/ml4bio/SCMBench/commits/main/
SCMBenchhttps://github.com/ml4bio/SCMBench/tree/main/SCMBench
SCMBenchhttps://github.com/ml4bio/SCMBench/tree/main/SCMBench
datahttps://github.com/ml4bio/SCMBench/tree/main/data
datahttps://github.com/ml4bio/SCMBench/tree/main/data
environmentshttps://github.com/ml4bio/SCMBench/tree/main/environments
environmentshttps://github.com/ml4bio/SCMBench/tree/main/environments
evaluationhttps://github.com/ml4bio/SCMBench/tree/main/evaluation
evaluationhttps://github.com/ml4bio/SCMBench/tree/main/evaluation
methodshttps://github.com/ml4bio/SCMBench/tree/main/methods
methodshttps://github.com/ml4bio/SCMBench/tree/main/methods
.gitignorehttps://github.com/ml4bio/SCMBench/blob/main/.gitignore
.gitignorehttps://github.com/ml4bio/SCMBench/blob/main/.gitignore
LICENSEhttps://github.com/ml4bio/SCMBench/blob/main/LICENSE
LICENSEhttps://github.com/ml4bio/SCMBench/blob/main/LICENSE
README.mdhttps://github.com/ml4bio/SCMBench/blob/main/README.md
README.mdhttps://github.com/ml4bio/SCMBench/blob/main/README.md
READMEhttps://github.com/ml4bio/SCMBench
MIT licensehttps://github.com/ml4bio/SCMBench
https://github.com/ml4bio/SCMBench#scmbench
https://github.com/ml4bio/SCMBench#directory-structure
https://github.com/ml4bio/SCMBench#installation
https://github.com/ml4bio/SCMBench#1-clone-our-repository
https://github.com/ml4bio/SCMBench#2-set-up-for-each-method
environmentshttps://github.com/ml4bio/SCMBench/blob/main/environments
https://github.com/ml4bio/SCMBench#quick-start
thishttps://github.com/ml4bio/SCMBench/blob/main/data/README.md
thishttps://stackoverflow.com/questions/70410968/is-it-possible-to-install-r-in-miniconda
https://github.com/ml4bio/SCMBench#data-preprocessing
herehttps://github.com/ml4bio/SCMBench/blob/main/data/README.md
herehttps://github.com/ml4bio/SCMBench/blob/main/data/README.md
https://github.com/ml4bio/SCMBench#algorithms
methods/https://github.com/ml4bio/SCMBench/blob/main/methods
https://github.com/ml4bio/SCMBench#statistical-based
bindSChttps://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02679-x
MMD_MAhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8496402/
MOFAhttps://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02015-1
UnionComhttps://academic.oup.com/bioinformatics/article/36/Supplement_1/i48/5870490
Seurat v5https://www.nature.com/articles/s41587-023-01767-y
Seurat V4https://www.cell.com/cell/fulltext/S0092-8674(21)00583-3
iNMFhttps://www.nature.com/articles/s41587-021-00867-x
LIGERhttps://www.cell.com/cell/pdf/S0092-8674(19)30504-5.pdf
Pamonahttps://academic.oup.com/bioinformatics/article/38/1/211/6353029
scMoMaThttps://www.nature.com/articles/s41467-023-36066-2
Harmonyhttps://www.nature.com/articles/s41592-019-0619-0
https://github.com/ml4bio/SCMBench#deep-learning-based
totalVIhttps://www.nature.com/articles/s41592-020-01050-x
scMDChttps://www.nature.com/articles/s41467-022-35031-9
DeepMAPShttps://www.nature.com/articles/s41467-023-36559-0
SIMBAhttps://www.nature.com/articles/s41592-023-01899-8
Cobolthttps://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02556-z
scVIhttps://www.nature.com/articles/s41592-018-0229-2
scJointhttps://www.nature.com/articles/s41587-021-01161-6
GLUEhttps://www.nature.com/articles/s41587-022-01284-4
Harmonyhttps://www.nature.com/articles/s41592-019-0619-0
https://github.com/ml4bio/SCMBench#foundation-models
Geneformerhttps://www.nature.com/articles/s41586-023-06139-9
scFoundationhttps://www.nature.com/articles/s41592-024-02305-7
scGPThttps://www.nature.com/articles/s41592-024-02201-0
UCEhttps://www.biorxiv.org/content/10.1101/2023.11.28.568918v1
https://github.com/ml4bio/SCMBench#downstream-tasks
evaluation/README.mdhttps://github.com/ml4bio/SCMBench/blob/main/evaluation/README.md
https://github.com/ml4bio/SCMBench#solution-to-potential-install-issues
herehttps://bedtools.readthedocs.io/en/latest/content/installation.html#downloading-a-pre-compiled-binary
thishttps://github.com/facebookresearch/PyTorch-BigGraph#installation
https://github.com/ml4bio/SCMBench#online-version---scmbench-server
Readme https://github.com/ml4bio/SCMBench#readme-ov-file
MIT license https://github.com/ml4bio/SCMBench#MIT-1-ov-file
Please reload this pagehttps://github.com/ml4bio/SCMBench
Activityhttps://github.com/ml4bio/SCMBench/activity
Custom propertieshttps://github.com/ml4bio/SCMBench/custom-properties
0 forkshttps://github.com/ml4bio/SCMBench/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fml4bio%2FSCMBench&report=ml4bio+%28user%29
Releases 1https://github.com/ml4bio/SCMBench/releases
The first release Latest Mar 16, 2026 https://github.com/ml4bio/SCMBench/releases/tag/v1.0.0
Packages 0https://github.com/orgs/ml4bio/packages?repo_name=SCMBench
Please reload this pagehttps://github.com/ml4bio/SCMBench
Contributorshttps://github.com/ml4bio/SCMBench/graphs/contributors
Please reload this pagehttps://github.com/ml4bio/SCMBench
Jupyter Notebook 94.9% https://github.com/ml4bio/SCMBench/search?l=jupyter-notebook
Python 4.4% https://github.com/ml4bio/SCMBench/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.