René's URL Explorer Experiment


Title: GitHub - mktle/colorSV: somatic SV calling on matched tumor-normal co-assembly graphs · GitHub

Open Graph Title: GitHub - mktle/colorSV: somatic SV calling on matched tumor-normal co-assembly graphs

X Title: GitHub - mktle/colorSV: somatic SV calling on matched tumor-normal co-assembly graphs

Description: somatic SV calling on matched tumor-normal co-assembly graphs - mktle/colorSV

Open Graph Description: somatic SV calling on matched tumor-normal co-assembly graphs - mktle/colorSV

X Description: somatic SV calling on matched tumor-normal co-assembly graphs - mktle/colorSV

Opengraph URL: https://github.com/mktle/colorSV

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:f5489f5a-ab1e-4b17-e3d8-f2ec2e4e01cd
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idDAA4:2F06B1:11924CA:1948188:6A4BAC50
html-safe-nonce72ee8371cd51c119319f75f25f430034f9084ef34c34d9dc09b60d6138fcfe5c
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJEQUE0OjJGMDZCMToxMTkyNENBOjE5NDgxODg6NkE0QkFDNTAiLCJ2aXNpdG9yX2lkIjoiNTE1NTI4NDc1MzY2Njc4MDI0MCIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac141060a7e52b40f77836c62da528c1df84a588b36f75de3ffb6276f318ca8026
hovercard-subject-tagrepository:733308052
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/mktle/colorSV
twitter:imagehttps://opengraph.githubassets.com/56715caed83d34eca101cc0ba8801a4772c3d863632c9daecce17b7b43a86633/mktle/colorSV
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/56715caed83d34eca101cc0ba8801a4772c3d863632c9daecce17b7b43a86633/mktle/colorSV
og:image:altsomatic SV calling on matched tumor-normal co-assembly graphs - mktle/colorSV
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None3ede370c1d797b0693475db9bb4298020548dcae9c98a2f071d54aaf1b4e9faa
turbo-cache-controlno-cache
go-importgithub.com/mktle/colorSV git https://github.com/mktle/colorSV.git
octolytics-dimension-user_id35265402
octolytics-dimension-user_loginmktle
octolytics-dimension-repository_id733308052
octolytics-dimension-repository_nwomktle/colorSV
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id733308052
octolytics-dimension-repository_network_root_nwomktle/colorSV
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releaseaf627ba2b0ed5351c6d1b8e04fdbe893325c237f
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/mktle/colorSV#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmktle%2FcolorSV
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmktle%2FcolorSV
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=mktle%2FcolorSV
Reloadhttps://github.com/mktle/colorSV
Reloadhttps://github.com/mktle/colorSV
Reloadhttps://github.com/mktle/colorSV
mktle https://github.com/mktle
colorSVhttps://github.com/mktle/colorSV
Notifications https://github.com/login?return_to=%2Fmktle%2FcolorSV
Fork 3 https://github.com/login?return_to=%2Fmktle%2FcolorSV
Star 22 https://github.com/login?return_to=%2Fmktle%2FcolorSV
Code https://github.com/mktle/colorSV
Issues 0 https://github.com/mktle/colorSV/issues
Pull requests 0 https://github.com/mktle/colorSV/pulls
Actions https://github.com/mktle/colorSV/actions
Projects https://github.com/mktle/colorSV/projects
Security and quality 0 https://github.com/mktle/colorSV/security
Insights https://github.com/mktle/colorSV/pulse
Code https://github.com/mktle/colorSV
Issues https://github.com/mktle/colorSV/issues
Pull requests https://github.com/mktle/colorSV/pulls
Actions https://github.com/mktle/colorSV/actions
Projects https://github.com/mktle/colorSV/projects
Security and quality https://github.com/mktle/colorSV/security
Insights https://github.com/mktle/colorSV/pulse
https://github.com/mktle/colorSV
Brancheshttps://github.com/mktle/colorSV/branches
Tagshttps://github.com/mktle/colorSV/tags
https://github.com/mktle/colorSV/branches
https://github.com/mktle/colorSV/tags
57 Commitshttps://github.com/mktle/colorSV/commits/main/
https://github.com/mktle/colorSV/commits/main/
exampleshttps://github.com/mktle/colorSV/tree/main/examples
exampleshttps://github.com/mktle/colorSV/tree/main/examples
Makefilehttps://github.com/mktle/colorSV/blob/main/Makefile
Makefilehttps://github.com/mktle/colorSV/blob/main/Makefile
README.mdhttps://github.com/mktle/colorSV/blob/main/README.md
README.mdhttps://github.com/mktle/colorSV/blob/main/README.md
argument_parser.cpphttps://github.com/mktle/colorSV/blob/main/argument_parser.cpp
argument_parser.cpphttps://github.com/mktle/colorSV/blob/main/argument_parser.cpp
argument_parser.hhttps://github.com/mktle/colorSV/blob/main/argument_parser.h
argument_parser.hhttps://github.com/mktle/colorSV/blob/main/argument_parser.h
gafcall.jshttps://github.com/mktle/colorSV/blob/main/gafcall.js
gafcall.jshttps://github.com/mktle/colorSV/blob/main/gafcall.js
main.cpphttps://github.com/mktle/colorSV/blob/main/main.cpp
main.cpphttps://github.com/mktle/colorSV/blob/main/main.cpp
preprocess.cpphttps://github.com/mktle/colorSV/blob/main/preprocess.cpp
preprocess.cpphttps://github.com/mktle/colorSV/blob/main/preprocess.cpp
preprocess.hhttps://github.com/mktle/colorSV/blob/main/preprocess.h
preprocess.hhttps://github.com/mktle/colorSV/blob/main/preprocess.h
topology_search.cpphttps://github.com/mktle/colorSV/blob/main/topology_search.cpp
topology_search.cpphttps://github.com/mktle/colorSV/blob/main/topology_search.cpp
topology_search.hhttps://github.com/mktle/colorSV/blob/main/topology_search.h
topology_search.hhttps://github.com/mktle/colorSV/blob/main/topology_search.h
READMEhttps://github.com/mktle/colorSV
hifiasmhttps://github.com/chhylp123/hifiasm
linkhttps://www.biorxiv.org/content/10.1101/2024.07.29.605160v1
https://github.com/mktle/colorSV#table-of-contents
Software Requirementshttps://github.com/mktle/colorSV#software-requirements
Installationhttps://github.com/mktle/colorSV#installation
Example Usagehttps://github.com/mktle/colorSV#example-usage
From Example Readshttps://github.com/mktle/colorSV#from-example-reads
From An Example Graphhttps://github.com/mktle/colorSV#from-an-example-graph
Pipelinehttps://github.com/mktle/colorSV#pipeline
1) Joint Assemblyhttps://github.com/mktle/colorSV#1-joint-assembly
2) Preprocessinghttps://github.com/mktle/colorSV#2-preprocessing
3) SV Callinghttps://github.com/mktle/colorSV#3-sv-calling
Limitationshttps://github.com/mktle/colorSV#limitations
https://github.com/mktle/colorSV#software-requirements
Minimap2https://github.com/lh3/minimap2
k8https://github.com/attractivechaos/k8
https://github.com/mktle/colorSV#installation
minimap2 and k8https://github.com/mktle/colorSV#software-requirements
https://github.com/mktle/colorSV#example-usage
COLO829/COLO829BL PacBio Revio datasetshttps://downloads.pacbcloud.com/public/revio/2023Q2/COLO829/
herehttps://github.com/marbl/CHM13
raw reads themselveshttps://github.com/mktle/colorSV#from-example-reads
graph after co-assembling the raw readshttps://github.com/mktle/colorSV#from-an-example-graph
https://github.com/mktle/colorSV#from-example-reads
https://github.com/mktle/colorSV#from-an-example-graph
https://github.com/mktle/colorSV#pipeline
https://github.com/mktle/colorSV#1-joint-assembly
hifiasmhttps://github.com/chhylp123/hifiasm
https://github.com/mktle/colorSV#2-preprocessing
joint assemblyhttps://github.com/mktle/colorSV#joint-assembly
T2T-CHM13https://github.com/marbl/CHM13
https://github.com/mktle/colorSV#3-sv-calling
preprocessing stephttps://github.com/mktle/colorSV#preprocess
preprocessing stephttps://github.com/mktle/colorSV#preprocess
https://github.com/mktle/colorSV#limitations
Readme https://github.com/mktle/colorSV#readme-ov-file
Please reload this pagehttps://github.com/mktle/colorSV
Activityhttps://github.com/mktle/colorSV/activity
3 forkshttps://github.com/mktle/colorSV/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fmktle%2FcolorSV&report=mktle+%28user%29
Releases 1https://github.com/mktle/colorSV/releases
colorSV v0.1.0 Latest Jul 9, 2024 https://github.com/mktle/colorSV/releases/tag/v0.1.0
Packages 0https://github.com/users/mktle/packages?repo_name=colorSV
Please reload this pagehttps://github.com/mktle/colorSV
Contributorshttps://github.com/mktle/colorSV/graphs/contributors
Please reload this pagehttps://github.com/mktle/colorSV
C++ 61.1% https://github.com/mktle/colorSV/search?l=c%2B%2B
JavaScript 38.3% https://github.com/mktle/colorSV/search?l=javascript
Makefile 0.6% https://github.com/mktle/colorSV/search?l=makefile
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.