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| https://github.com/mjDelta/DeepAdapter/commits/main/ |
| deepadapter | https://github.com/mjDelta/DeepAdapter/tree/main/deepadapter |
| deepadapter | https://github.com/mjDelta/DeepAdapter/tree/main/deepadapter |
| mnn_utils | https://github.com/mjDelta/DeepAdapter/tree/main/mnn_utils |
| mnn_utils | https://github.com/mjDelta/DeepAdapter/tree/main/mnn_utils |
| Benchmarking-MNN.py | https://github.com/mjDelta/DeepAdapter/blob/main/Benchmarking-MNN.py |
| Benchmarking-MNN.py | https://github.com/mjDelta/DeepAdapter/blob/main/Benchmarking-MNN.py |
| Benchmarking-methods.ipynb | https://github.com/mjDelta/DeepAdapter/blob/main/Benchmarking-methods.ipynb |
| Benchmarking-methods.ipynb | https://github.com/mjDelta/DeepAdapter/blob/main/Benchmarking-methods.ipynb |
| DA-Example-Finetune.ipynb | https://github.com/mjDelta/DeepAdapter/blob/main/DA-Example-Finetune.ipynb |
| DA-Example-Finetune.ipynb | https://github.com/mjDelta/DeepAdapter/blob/main/DA-Example-Finetune.ipynb |
| DA-Example-Tutorial.ipynb | https://github.com/mjDelta/DeepAdapter/blob/main/DA-Example-Tutorial.ipynb |
| DA-Example-Tutorial.ipynb | https://github.com/mjDelta/DeepAdapter/blob/main/DA-Example-Tutorial.ipynb |
| DA-YourOwnData-Finetune.ipynb | https://github.com/mjDelta/DeepAdapter/blob/main/DA-YourOwnData-Finetune.ipynb |
| DA-YourOwnData-Finetune.ipynb | https://github.com/mjDelta/DeepAdapter/blob/main/DA-YourOwnData-Finetune.ipynb |
| DA-YourOwnData-Tutorial.ipynb | https://github.com/mjDelta/DeepAdapter/blob/main/DA-YourOwnData-Tutorial.ipynb |
| DA-YourOwnData-Tutorial.ipynb | https://github.com/mjDelta/DeepAdapter/blob/main/DA-YourOwnData-Tutorial.ipynb |
| LICENSE | https://github.com/mjDelta/DeepAdapter/blob/main/LICENSE |
| LICENSE | https://github.com/mjDelta/DeepAdapter/blob/main/LICENSE |
| README.md | https://github.com/mjDelta/DeepAdapter/blob/main/README.md |
| README.md | https://github.com/mjDelta/DeepAdapter/blob/main/README.md |
| requirements.txt | https://github.com/mjDelta/DeepAdapter/blob/main/requirements.txt |
| requirements.txt | https://github.com/mjDelta/DeepAdapter/blob/main/requirements.txt |
| setup.py | https://github.com/mjDelta/DeepAdapter/blob/main/setup.py |
| setup.py | https://github.com/mjDelta/DeepAdapter/blob/main/setup.py |
| README | https://github.com/mjDelta/DeepAdapter |
| BSD-3-Clause license | https://github.com/mjDelta/DeepAdapter |
| https://github.com/mjDelta/DeepAdapter#deepadapter |
| https://github.com/mjDelta/DeepAdapter#a-self-adaptive-and-versatile-tool-for-eliminating-multiple-undesirable-variations-from-transcriptome |
| A self-adaptive and versatile tool for eliminating multiple undesirable variations from transcriptome | https://www.biorxiv.org/content/10.1101/2024.02.04.578839v1 |
| https://github.com/mjDelta/DeepAdapter#installation |
| https://github.com/mjDelta/DeepAdapter#get-started |
| https://github.com/mjDelta/DeepAdapter#running-environment-configuration |
| https://github.com/mjDelta/DeepAdapter#train-deepadapter-with-the-provided-example-datsets-or-your-own-dataset |
| click here to download | https://github.com/mjDelta/DeepAdapter/blob/main/DA-Example-Tutorial.ipynb |
| click here to download | https://github.com/mjDelta/DeepAdapter/blob/main/DA-YourOwnData-Tutorial.ipynb |
| https://github.com/mjDelta/DeepAdapter#fine-tune-deepadapter-with-limited-data-samples |
| click here to download | https://github.com/mjDelta/DeepAdapter/blob/main/DA-Example-Finetune.ipynb |
| click here to download | https://github.com/mjDelta/DeepAdapter/blob/main/DA-YourOwnData-Finetune.ipynb |
| https://github.com/mjDelta/DeepAdapter#run-the-benchmarking-methods |
| click here to download | https://github.com/mjDelta/DeepAdapter/blob/main/Benchmarking-methods.ipynb |
| click here to download | https://github.com/mjDelta/DeepAdapter/blob/main/Benchmarking-MNN.py |
| click here to download | https://github.com/mjDelta/DeepAdapter/blob/main/mnn_utils |
| https://github.com/mjDelta/DeepAdapter#resources |
| https://github.com/mjDelta/DeepAdapter#datasets |
| Zenodo | https://zenodo.org/records/10494751 |
| van Hasselt et al. Nature Communications, 2020 | https://www.nature.com/articles/s41467-020-18396-7 |
| Yu, Y. et al. Nature Biotechnology, 2023 | https://www.nature.com/articles/s41587-023-01867-9 |
| Iorio, F. et al. Cell, 2016 | https://www.cell.com/cell/pdf/S0092-8674(16)30746-2.pdf |
| Ghandi, M. et al. Nature, 2019 | https://www.nature.com/articles/s41586-019-1186-3 |
| Ghandi, M. et al. Nature, 2019 | https://www.nature.com/articles/s41586-019-1186-3 |
| Weinstein, J.N. et al. Nature genetics, 2013 | https://www.nature.com/articles/ng.2764 |
| https://github.com/mjDelta/DeepAdapter#pretrained-models |
| click here to download | https://zenodo.org/records/14664454 |
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Readme
| https://github.com/mjDelta/DeepAdapter#readme-ov-file |
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Codes for DA v1.1.0
Latest
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