| react-profiling | 0 |
| react-import-map | react,react-dom,react-dom/client,react-dom/profiling,react-is,react-reconciler,react/compiler-runtime,react/jsx-dev-runtime,react/jsx-runtime,scheduler@d5750093facf |
| route-pattern | /:user_id/:repository |
| route-controller | files |
| route-action | disambiguate |
| fetch-nonce | v2:c11e85ec-eef6-e3e8-bbf0-9e2396086524 |
| current-catalog-service-hash | f3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb |
| request-id | EA98:737D8:229F0F:2F9F96:6AEC6E59 |
| html-safe-nonce | 0cdbbeb69c976e5fb889344dcb09562dc2f9f99b45a8d415a1945a1cfc9eadf5 |
| visitor-payload | eyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJFQTk4OjczN0Q4OjIyOUYwRjoyRjlGOTY6NkFFQzZFNTkiLCJ2aXNpdG9yX2lkIjoiODEwNzQ4MjczNDIwNTM2NTg0OSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9 |
| visitor-hmac | cb1a3d8ff4db72c37fa2c081ae8cadd7ae668df63e8b33591a7c68e1d2a9ce58 |
| hovercard-subject-tag | repository:43390645 |
| github-keyboard-shortcuts | repository,copilot |
| google-site-verification | Apib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I |
| octolytics-url | https://collector.github.com/github/collect |
| analytics-location | // |
| fb:app_id | 1401488693436528 |
| apple-itunes-app | app-id=1477376905, app-argument=https://github.com/microgenomics/tutorials |
| twitter:image | https://opengraph.githubassets.com/a517e6b33ef065f94dfd9f62609b2736797f11b2d60ae0eb5d50323fc0967e90/microgenomics/tutorials |
| twitter:card | summary_large_image |
| og:image | https://opengraph.githubassets.com/a517e6b33ef065f94dfd9f62609b2736797f11b2d60ae0eb5d50323fc0967e90/microgenomics/tutorials |
| og:image:alt | In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun! - microgenomics/tuto... |
| og:image:width | 1200 |
| og:image:height | 600 |
| og:site_name | GitHub |
| og:type | object |
| hostname | github.com |
| expected-hostname | github.com |
| None | 81a8a223b8411e760195a15942ff045b37d56328f5bf02c4ca5f903e3dcb475e |
| turbo-cache-control | no-cache |
| go-import | github.com/microgenomics/tutorials git https://github.com/microgenomics/tutorials.git |
| octolytics-dimension-user_id | 14895852 |
| octolytics-dimension-user_login | microgenomics |
| octolytics-dimension-repository_id | 43390645 |
| octolytics-dimension-repository_nwo | microgenomics/tutorials |
| octolytics-dimension-repository_public | true |
| octolytics-dimension-repository_is_fork | false |
| octolytics-dimension-repository_network_root_id | 43390645 |
| octolytics-dimension-repository_network_root_nwo | microgenomics/tutorials |
| turbo-body-classes | logged-out env-production page-responsive |
| disable-turbo | false |
| browser-stats-url | https://api.github.com/_private/browser/stats |
| browser-errors-url | https://api.github.com/_private/browser/errors |
| release | a2c6dc5933515805b39ac7c5b9ab4e947c2f5a42 |
| ui-target | full |
| theme-color | #1e2327 |
| color-scheme | light dark |
| Skip to content | https://github.com/microgenomics/tutorials#start-of-content |
| https://github.com/ |
| Sign in | https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrogenomics%2Ftutorials |
| GitHubRepository hosting, code review, and collaboration | https://github.com/platform |
| CopilotAI coding agent for tasks, projects and automated work | https://github.com/features/copilot |
| ActionsCI/CD and automation | https://github.com/features/actions |
| Code QualityQuality analysis, fixes, and enforcement | https://github.com/features/code-quality |
| CodespacesCloud development environments | https://github.com/features/codespaces |
| Code SecurityVulnerability detection and remediation | https://github.com/security/advanced-security/code-security |
| Secret ProtectionSecret scanning and leak prevention | https://github.com/security/advanced-security/secret-protection |
| All Features | https://github.com/features |
| Documentation | https://docs.github.com/en |
| Training | https://learn.github.com/skills |
| Certifications | https://learn.github.com/credentials |
| Build with Copilot | https://github.com/features/ai |
| Customize Copilot | https://docs.github.com/en/copilot/how-tos/copilot-on-github/customize-copilot/customize-copilot-overview |
| Integrations | https://github.com/marketplace |
| Trending repos | https://github.com/trending |
| GitHub Sponsors | https://github.com/open-source/sponsors |
| Developer articles | https://github.com/resources/articles |
| ChangelogYour source for the latest features, improvements, and fixes across GitHub products, all in one place. | https://github.blog/changelog/ |
| Enterprises | https://github.com/enterprise |
| Team | https://github.com/team |
| Startups | https://github.com/enterprise/startups |
| Nonprofits | https://github.com/solutions/industry/nonprofits |
| Healthcare | https://github.com/solutions/industry/healthcare |
| Financial services | https://github.com/solutions/industry/financial-services |
| Manufacturing | https://github.com/solutions/industry/manufacturing |
| Government | https://github.com/solutions/industry/government |
| See all industries | https://github.com/solutions/industry |
| Why GitHub | https://github.com/why-github |
| Customer Stories | https://github.com/customer-stories |
| Business insights | https://github.com/solutions/executive-insights |
| Trust Center | https://github.com/trust-center |
| GitHub Advanced SecurityEnterprise-grade code security | https://github.com/security/advanced-security |
| Copilot for businessEnterprise-grade AI features | https://github.com/features/copilot/copilot-business |
| Premium SupportEnterprise-grade 24/7 support | https://github.com/enterprise/premium-support |
| Documentation | https://docs.github.com/en |
| Resource center | https://github.com/resources |
| Blog | https://github.blog/ |
| Events & webinars | https://github.com/resources/events |
| Community Forum | https://github.com/orgs/community/discussions |
| Customer Stories | https://github.com/customer-stories |
| Integrations | https://github.com/marketplace |
| Customer support | https://help.github.com/ |
| Training | https://learn.github.com/skills |
| GitHub Status | https://www.githubstatus.com/ |
| About | https://github.com/about |
| Partners | https://github.com/partners |
| Changelog | https://github.blog/changelog/ |
| GitHub UniverseThe event for developers, by developers — talks, workshops, and what’s next for GitHub. | https://githubuniverse.com/ |
| Pricing | https://github.com/pricing |
| Sign in | https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmicrogenomics%2Ftutorials |
| Sign up | https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=microgenomics%2Ftutorials |
| Reload | https://github.com/microgenomics/tutorials |
| Reload | https://github.com/microgenomics/tutorials |
| Reload | https://github.com/microgenomics/tutorials |
| microgenomics | https://github.com/microgenomics |
| tutorials | https://github.com/microgenomics/tutorials |
| Code | https://github.com/microgenomics/tutorials |
| Issues3 (3) | https://github.com/microgenomics/tutorials/issues |
| Pull requests | https://github.com/microgenomics/tutorials/pulls |
| Actions | https://github.com/microgenomics/tutorials/actions |
| Projects | https://github.com/microgenomics/tutorials/projects |
| Wiki | https://github.com/microgenomics/tutorials/wiki |
| Security and quality | https://github.com/microgenomics/tutorials/security |
| Insights | https://github.com/microgenomics/tutorials/pulse |
| https://github.com/microgenomics/tutorials |
| tutorials | https://github.com/microgenomics/tutorials |
| Notifications | https://github.com/login?return_to=%2Fmicrogenomics%2Ftutorials |
| Fork54 (54) | https://github.com/login?return_to=%2Fmicrogenomics%2Ftutorials |
| Star83 (83) | https://github.com/login?return_to=%2Fmicrogenomics%2Ftutorials |
| Readme | https://github.com/microgenomics/tutorials#readme-ov-file |
| MIT license | https://github.com/microgenomics/tutorials#MIT-1-ov-file |
| Activity | https://github.com/microgenomics/tutorials/activity |
| Custom properties | https://github.com/microgenomics/tutorials/custom-properties |
| 54 forks | https://github.com/microgenomics/tutorials/forks |
| Report repository | https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fmicrogenomics%2Ftutorials&report=microgenomics+%28user%29 |
| Branches | https://github.com/microgenomics/tutorials/branches |
| Tags | https://github.com/microgenomics/tutorials/tags |
| https://github.com/microgenomics/tutorials/branches |
| https://github.com/microgenomics/tutorials/tags |
| 73 Commits | https://github.com/microgenomics/tutorials/commits/master/ |
| https://github.com/microgenomics/tutorials/commits/master/ |
| genomes | https://github.com/microgenomics/tutorials/tree/master/genomes |
| genomes | https://github.com/microgenomics/tutorials/tree/master/genomes |
| img | https://github.com/microgenomics/tutorials/tree/master/img |
| img | https://github.com/microgenomics/tutorials/tree/master/img |
| .DS_Store | https://github.com/microgenomics/tutorials/blob/master/.DS_Store |
| .DS_Store | https://github.com/microgenomics/tutorials/blob/master/.DS_Store |
| DBGenerator.py | https://github.com/microgenomics/tutorials/blob/master/DBGenerator.py |
| DBGenerator.py | https://github.com/microgenomics/tutorials/blob/master/DBGenerator.py |
| LICENSE | https://github.com/microgenomics/tutorials/blob/master/LICENSE |
| LICENSE | https://github.com/microgenomics/tutorials/blob/master/LICENSE |
| PathoScope_Tutorial.md | https://github.com/microgenomics/tutorials/blob/master/PathoScope_Tutorial.md |
| PathoScope_Tutorial.md | https://github.com/microgenomics/tutorials/blob/master/PathoScope_Tutorial.md |
| README.md | https://github.com/microgenomics/tutorials/blob/master/README.md |
| README.md | https://github.com/microgenomics/tutorials/blob/master/README.md |
| core_gene_alignment.nwk | https://github.com/microgenomics/tutorials/blob/master/core_gene_alignment.nwk |
| core_gene_alignment.nwk | https://github.com/microgenomics/tutorials/blob/master/core_gene_alignment.nwk |
| infmed.md | https://github.com/microgenomics/tutorials/blob/master/infmed.md |
| infmed.md | https://github.com/microgenomics/tutorials/blob/master/infmed.md |
| pangenome.md | https://github.com/microgenomics/tutorials/blob/master/pangenome.md |
| pangenome.md | https://github.com/microgenomics/tutorials/blob/master/pangenome.md |
| sra.md | https://github.com/microgenomics/tutorials/blob/master/sra.md |
| sra.md | https://github.com/microgenomics/tutorials/blob/master/sra.md |
| README | https://github.com/microgenomics/tutorials |
| MIT license | https://github.com/microgenomics/tutorials |
| https://raw.githubusercontent.com/microgenomics/tutorials/master/img/microgenomics.png |
| https://github.com/microgenomics/tutorials#tutorials-and-demos |
| https://github.com/microgenomics/tutorials#list-of-materials |
| Running PathoScope2 | https://github.com/microgenomics/tutorials/blob/master/PathoScope_Tutorial.md |
| How to perform a pangenome analysis using Roary | https://github.com/microgenomics/tutorials/blob/master/pangenome.md |
| How to perform basic exploratory analyses with PathoScope2's output | https://github.com/ecastron/PS_demo/blob/master/demo02.md |
| How to download data from the Sequence Read Archive | https://github.com/microgenomics/tutorials/blob/master/sra.md |
| Readme | https://github.com/microgenomics/tutorials#readme-ov-file |
| MIT license | https://github.com/microgenomics/tutorials#MIT-1-ov-file |
| Activity | https://github.com/microgenomics/tutorials/activity |
| Custom properties | https://github.com/microgenomics/tutorials/custom-properties |
| 54 forks | https://github.com/microgenomics/tutorials/forks |
| Report repository | https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fmicrogenomics%2Ftutorials&report=microgenomics+%28user%29 |
|
| https://github.com |
| Terms | https://docs.github.com/site-policy/github-terms/github-terms-of-service |
| Privacy | https://docs.github.com/site-policy/privacy-policies/github-privacy-statement |
| Security | https://github.com/security |
| Status | https://www.githubstatus.com/ |
| Community | https://github.community/ |
| Docs | https://docs.github.com/ |
| Contact | https://support.github.com?tags=dotcom-footer |