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Title: History for parseMethods.bash - microgenomics/parseMethods · GitHub

Open Graph Title: History for parseMethods.bash - microgenomics/parseMethods

X Title: History for parseMethods.bash - microgenomics/parseMethods

Description: Parse Methods Module is a Parse Module from SEPA (a multi pipe to test pathogen software detection), that parses result files from several softwares (pathoscope, metamix, sigma, metaphlan (on development), constrains (metaphlan dependent)) - History for parseMethods.bash - microgenomics/parseMethods

Open Graph Description: Parse Methods Module is a Parse Module from SEPA (a multi pipe to test pathogen software detection), that parses result files from several softwares (pathoscope, metamix, sigma, metaphlan (on devel...

X Description: Parse Methods Module is a Parse Module from SEPA (a multi pipe to test pathogen software detection), that parses result files from several softwares (pathoscope, metamix, sigma, metaphlan (on devel...

Opengraph URL: https://github.com/microgenomics/parseMethods

X: @github

direct link

Domain: github.com

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add --method option; update readme; change pathoscope pattern for *report.tsvhttps://github.com/microgenomics/parseMethods/commit/bd4ddb16288d68e171605c961ee812e409f77668
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fix depth and update r readmehttps://github.com/microgenomics/parseMethods/commit/99e82b48df3f9b5108279f034d1b70218852f09f
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improve constrains parsehttps://github.com/microgenomics/parseMethods/commit/30f6cf1fa9e1a587a15adfe1a5aeba9a54c9d27b
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fix empty species to centrifugehttps://github.com/microgenomics/parseMethods/commit/31073c5ac51e2e7de197aad21c389825b8c652ee
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fix genu-species lineage fetchinghttps://github.com/microgenomics/parseMethods/commit/30d54b328e7b5b96c86941ab31962108115aeef2
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fix centrifuge deep sequence summaryhttps://github.com/microgenomics/parseMethods/commit/f9a923aa03ce98d2a7f0444ed44c20f7de781438
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fix centrifuge parse && adjust deep sequence from all software to the specify by --deepshttps://github.com/microgenomics/parseMethods/commit/088892a46480f9a7b63a73ab98f4a473944a1218
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update helphttps://github.com/microgenomics/parseMethods/commit/6ad1f97b240ef8dd831ed41678ad51553c4c6e91
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fix metamix parse errorhttps://github.com/microgenomics/parseMethods/commit/e3dfc3a6b03a457304914a8ac765405273734e32
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fix bugs in kraken & metaphlanhttps://github.com/microgenomics/parseMethods/commit/821a3093d43f29b542788105fe18486b7915e4d4
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centrifuge addedhttps://github.com/microgenomics/parseMethods/commit/bb02ef207ff32e8f704fea5828d9d7034479f007
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http->https ncbi tax id fetch & taxator function parse addedhttps://github.com/microgenomics/parseMethods/commit/d16a7c7331a40f3374c0685957317fdf557bc246
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retrying curl implementedhttps://github.com/microgenomics/parseMethods/commit/862d40105aa00fdd647ec428a962622c2b1ad8f3
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release the krakeeeenhttps://github.com/microgenomics/parseMethods/commit/08ffe97ee40646f6c09dfbb93ccba1cc67a506ca
08ffe97https://github.com/microgenomics/parseMethods/commit/08ffe97ee40646f6c09dfbb93ccba1cc67a506ca
https://github.com/microgenomics/parseMethods/blob/08ffe97ee40646f6c09dfbb93ccba1cc67a506ca/parseMethods.bash
https://github.com/microgenomics/parseMethods/tree/08ffe97ee40646f6c09dfbb93ccba1cc67a506ca
clean codehttps://github.com/microgenomics/parseMethods/commit/572937d22806d18cff66d4c77d2ccf9fd94df161
572937dhttps://github.com/microgenomics/parseMethods/commit/572937d22806d18cff66d4c77d2ccf9fd94df161
https://github.com/microgenomics/parseMethods/blob/572937d22806d18cff66d4c77d2ccf9fd94df161/parseMethods.bash
https://github.com/microgenomics/parseMethods/tree/572937d22806d18cff66d4c77d2ccf9fd94df161
constrains addedhttps://github.com/microgenomics/parseMethods/commit/8315a9a195de0c28bec8cef07c8d839f5b8eded7
8315a9ahttps://github.com/microgenomics/parseMethods/commit/8315a9a195de0c28bec8cef07c8d839f5b8eded7
https://github.com/microgenomics/parseMethods/blob/8315a9a195de0c28bec8cef07c8d839f5b8eded7/parseMethods.bash
https://github.com/microgenomics/parseMethods/tree/8315a9a195de0c28bec8cef07c8d839f5b8eded7
working in constrainshttps://github.com/microgenomics/parseMethods/commit/d9af0330d875e6f578f8c96b2c4096b859145d5e
d9af033https://github.com/microgenomics/parseMethods/commit/d9af0330d875e6f578f8c96b2c4096b859145d5e
https://github.com/microgenomics/parseMethods/blob/d9af0330d875e6f578f8c96b2c4096b859145d5e/parseMethods.bash
https://github.com/microgenomics/parseMethods/tree/d9af0330d875e6f578f8c96b2c4096b859145d5e
update scripthttps://github.com/microgenomics/parseMethods/commit/044abb1cdeefc218f68845105d7a3a78ce903333
044abb1https://github.com/microgenomics/parseMethods/commit/044abb1cdeefc218f68845105d7a3a78ce903333
https://github.com/microgenomics/parseMethods/blob/044abb1cdeefc218f68845105d7a3a78ce903333/parseMethods.bash
https://github.com/microgenomics/parseMethods/tree/044abb1cdeefc218f68845105d7a3a78ce903333
character parse correctionhttps://github.com/microgenomics/parseMethods/commit/441f2f3ea1ac3425a10812f625b05bd04eff2890
441f2f3https://github.com/microgenomics/parseMethods/commit/441f2f3ea1ac3425a10812f625b05bd04eff2890
https://github.com/microgenomics/parseMethods/blob/441f2f3ea1ac3425a10812f625b05bd04eff2890/parseMethods.bash
https://github.com/microgenomics/parseMethods/tree/441f2f3ea1ac3425a10812f625b05bd04eff2890
Merge branch 'master' of https://github.com/microgenomics/parseMethodshttps://github.com/microgenomics/parseMethods/commit/7eb2fdf86c9a590e285a05d1662a8957cacf498c
7eb2fdfhttps://github.com/microgenomics/parseMethods/commit/7eb2fdf86c9a590e285a05d1662a8957cacf498c
https://github.com/microgenomics/parseMethods/blob/7eb2fdf86c9a590e285a05d1662a8957cacf498c/parseMethods.bash
https://github.com/microgenomics/parseMethods/tree/7eb2fdf86c9a590e285a05d1662a8957cacf498c
character parse correctionhttps://github.com/microgenomics/parseMethods/commit/b30831d74f1e9dae82a3427f53ecbc5d128796ef
b30831dhttps://github.com/microgenomics/parseMethods/commit/b30831d74f1e9dae82a3427f53ecbc5d128796ef
https://github.com/microgenomics/parseMethods/blob/b30831d74f1e9dae82a3427f53ecbc5d128796ef/parseMethods.bash
https://github.com/microgenomics/parseMethods/tree/b30831d74f1e9dae82a3427f53ecbc5d128796ef
fix incomplete lineagehttps://github.com/microgenomics/parseMethods/commit/3056a11f0eae82e0cfc25e6db80047af81744be3
3056a11https://github.com/microgenomics/parseMethods/commit/3056a11f0eae82e0cfc25e6db80047af81744be3
https://github.com/microgenomics/parseMethods/blob/3056a11f0eae82e0cfc25e6db80047af81744be3/parseMethods.bash
https://github.com/microgenomics/parseMethods/tree/3056a11f0eae82e0cfc25e6db80047af81744be3
update fileshttps://github.com/microgenomics/parseMethods/commit/99a970d9fbe40ebd88acd563e802346275567567
99a970dhttps://github.com/microgenomics/parseMethods/commit/99a970d9fbe40ebd88acd563e802346275567567
https://github.com/microgenomics/parseMethods/blob/99a970d9fbe40ebd88acd563e802346275567567/parseMethods.bash
https://github.com/microgenomics/parseMethods/tree/99a970d9fbe40ebd88acd563e802346275567567
Nexthttps://github.com/microgenomics/parseMethods/commits/master/parseMethods.bash?after=b85354495d73e11b135fcbe00dcd00796fb9be03+34
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