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| og:image:alt | Parse Methods Module is a Parse Module from SEPA (a multi pipe to test pathogen software detection), that parses result files from several softwares (pathoscope, metamix, sigma, metaphlan (on devel... |
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| update readme | https://github.com/microgenomics/parseMethods/commit/b85354495d73e11b135fcbe00dcd00796fb9be03 |
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| https://github.com/microgenomics/parseMethods/tree/b85354495d73e11b135fcbe00dcd00796fb9be03 |
| add --method option; update readme; change pathoscope pattern for *report.tsv | https://github.com/microgenomics/parseMethods/commit/bd4ddb16288d68e171605c961ee812e409f77668 |
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| https://github.com/microgenomics/parseMethods/tree/f3c6cb3e793b4de508ba095808a8fb7dd54e8e5c |
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| Sanrrone | https://github.com/microgenomics/parseMethods/commits?author=Sanrrone |
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| https://github.com/microgenomics/parseMethods/tree/99e82b48df3f9b5108279f034d1b70218852f09f |
| improve constrains parse | https://github.com/microgenomics/parseMethods/commit/30f6cf1fa9e1a587a15adfe1a5aeba9a54c9d27b |
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| Sanrrone | https://github.com/microgenomics/parseMethods/commits?author=Sanrrone |
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| fix empty species to centrifuge | https://github.com/microgenomics/parseMethods/commit/31073c5ac51e2e7de197aad21c389825b8c652ee |
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| fix centrifuge parse && adjust deep sequence from all software to the specify by --deeps | https://github.com/microgenomics/parseMethods/commit/088892a46480f9a7b63a73ab98f4a473944a1218 |
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| https://github.com/microgenomics/parseMethods/tree/0e9b6524d7096649ebc890e2ff22be0d957424f5 |
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| https://github.com/microgenomics/parseMethods/tree/e3dfc3a6b03a457304914a8ac765405273734e32 |
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| https://github.com/microgenomics/parseMethods/tree/821a3093d43f29b542788105fe18486b7915e4d4 |
| centrifuge added | https://github.com/microgenomics/parseMethods/commit/bb02ef207ff32e8f704fea5828d9d7034479f007 |
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| minor bug fixed | https://github.com/microgenomics/parseMethods/commit/56ab79cc0d00aeae95c7e1ec63f711f7000d854d |
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| https://github.com/microgenomics/parseMethods/tree/62722653dc90cd8d3a48824642a0316cbf6195e8 |
| http->https ncbi tax id fetch & taxator function parse added | https://github.com/microgenomics/parseMethods/commit/d16a7c7331a40f3374c0685957317fdf557bc246 |
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| retrying curl implemented | https://github.com/microgenomics/parseMethods/commit/862d40105aa00fdd647ec428a962622c2b1ad8f3 |
| 862d401 | https://github.com/microgenomics/parseMethods/commit/862d40105aa00fdd647ec428a962622c2b1ad8f3 |
| https://github.com/microgenomics/parseMethods/tree/862d40105aa00fdd647ec428a962622c2b1ad8f3 |
| fix lineage parse | https://github.com/microgenomics/parseMethods/commit/647e71d94d096b632839266004baf4f8ab71b292 |
| 647e71d | https://github.com/microgenomics/parseMethods/commit/647e71d94d096b632839266004baf4f8ab71b292 |
| https://github.com/microgenomics/parseMethods/tree/647e71d94d096b632839266004baf4f8ab71b292 |
| simplify the table with no taxid | https://github.com/microgenomics/parseMethods/commit/3438c78670ecd5de104f4664a55f76c4f272e1df |
| 3438c78 | https://github.com/microgenomics/parseMethods/commit/3438c78670ecd5de104f4664a55f76c4f272e1df |
| https://github.com/microgenomics/parseMethods/tree/3438c78670ecd5de104f4664a55f76c4f272e1df |
| improve lineage fetch | https://github.com/microgenomics/parseMethods/commit/09f0033dd8a9e373f83b323ae69b776ec0570fe5 |
| 09f0033 | https://github.com/microgenomics/parseMethods/commit/09f0033dd8a9e373f83b323ae69b776ec0570fe5 |
| https://github.com/microgenomics/parseMethods/tree/09f0033dd8a9e373f83b323ae69b776ec0570fe5 |
| improve name printing when you get Candidatus | https://github.com/microgenomics/parseMethods/commit/7e8639163c2ff2f7ce8653c06072d8458a883d1a |
| 7e86391 | https://github.com/microgenomics/parseMethods/commit/7e8639163c2ff2f7ce8653c06072d8458a883d1a |
| https://github.com/microgenomics/parseMethods/tree/7e8639163c2ff2f7ce8653c06072d8458a883d1a |
| all parse completed | https://github.com/microgenomics/parseMethods/commit/a6d5698fedf58fc8c6b61cd3ba0ea477acdda277 |
| a6d5698 | https://github.com/microgenomics/parseMethods/commit/a6d5698fedf58fc8c6b61cd3ba0ea477acdda277 |
| https://github.com/microgenomics/parseMethods/tree/a6d5698fedf58fc8c6b61cd3ba0ea477acdda277 |
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| https://github.com/microgenomics/parseMethods/tree/8443f40e01cc7963e496dd0478fd5841af04e957 |
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| https://github.com/microgenomics/parseMethods/tree/08ffe97ee40646f6c09dfbb93ccba1cc67a506ca |
| clean code | https://github.com/microgenomics/parseMethods/commit/572937d22806d18cff66d4c77d2ccf9fd94df161 |
| 572937d | https://github.com/microgenomics/parseMethods/commit/572937d22806d18cff66d4c77d2ccf9fd94df161 |
| https://github.com/microgenomics/parseMethods/tree/572937d22806d18cff66d4c77d2ccf9fd94df161 |
| constrains added | https://github.com/microgenomics/parseMethods/commit/8315a9a195de0c28bec8cef07c8d839f5b8eded7 |
| 8315a9a | https://github.com/microgenomics/parseMethods/commit/8315a9a195de0c28bec8cef07c8d839f5b8eded7 |
| https://github.com/microgenomics/parseMethods/tree/8315a9a195de0c28bec8cef07c8d839f5b8eded7 |
| working in constrains | https://github.com/microgenomics/parseMethods/commit/d9af0330d875e6f578f8c96b2c4096b859145d5e |
| d9af033 | https://github.com/microgenomics/parseMethods/commit/d9af0330d875e6f578f8c96b2c4096b859145d5e |
| https://github.com/microgenomics/parseMethods/tree/d9af0330d875e6f578f8c96b2c4096b859145d5e |
| update script | https://github.com/microgenomics/parseMethods/commit/044abb1cdeefc218f68845105d7a3a78ce903333 |
| 044abb1 | https://github.com/microgenomics/parseMethods/commit/044abb1cdeefc218f68845105d7a3a78ce903333 |
| https://github.com/microgenomics/parseMethods/tree/044abb1cdeefc218f68845105d7a3a78ce903333 |
| character parse correction | https://github.com/microgenomics/parseMethods/commit/441f2f3ea1ac3425a10812f625b05bd04eff2890 |
| 441f2f3 | https://github.com/microgenomics/parseMethods/commit/441f2f3ea1ac3425a10812f625b05bd04eff2890 |
| https://github.com/microgenomics/parseMethods/tree/441f2f3ea1ac3425a10812f625b05bd04eff2890 |
| Next | https://github.com/microgenomics/parseMethods/commits?after=b85354495d73e11b135fcbe00dcd00796fb9be03+34 |
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