René's URL Explorer Experiment


Title: [Bug]: pcolormesh writing to input mask · Issue #26093 · matplotlib/matplotlib · GitHub

Open Graph Title: [Bug]: pcolormesh writing to input mask · Issue #26093 · matplotlib/matplotlib

X Title: [Bug]: pcolormesh writing to input mask · Issue #26093 · matplotlib/matplotlib

Description: Bug summary When pcolormesh receives a masked array, it seems to be writing back to the mask. Since numpy 1.24 this now causes pcolormesh to fail if the mask is read-only. Code for reproduction import matplotlib.pyplot as plt import nump...

Open Graph Description: Bug summary When pcolormesh receives a masked array, it seems to be writing back to the mask. Since numpy 1.24 this now causes pcolormesh to fail if the mask is read-only. Code for reproduction imp...

X Description: Bug summary When pcolormesh receives a masked array, it seems to be writing back to the mask. Since numpy 1.24 this now causes pcolormesh to fail if the mask is read-only. Code for reproduction imp...

Opengraph URL: https://github.com/matplotlib/matplotlib/issues/26093

X: @github

direct link

Domain: github.com


Hey, it has json ld scripts:
{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"[Bug]: pcolormesh writing to input mask","articleBody":"### Bug summary\n\nWhen `pcolormesh` receives a masked array, it seems to be writing back to the mask.  Since numpy 1.24 this now causes `pcolormesh` to fail if the mask is read-only.\n\n### Code for reproduction\n\n```python\nimport matplotlib.pyplot as plt\r\nimport numpy as np\r\n\r\ndata = np.arange(6).reshape(2, 3)\r\nmask = np.broadcast_to([False, True, False], data.shape)  # read-only array\r\n\r\nmasked_data = np.ma.array(data, mask=mask)\r\n\r\nplt.pcolormesh(masked_data)\n```\n\n\n### Actual outcome\n\n```\r\nTraceback (most recent call last):\r\n  File \"pcolormesh_read_only_mask.py\", line 9, in \u003cmodule\u003e\r\n    plt.pcolormesh(masked_data)\r\n  File \"[conda-env-path]/lib/python3.11/site-packages/matplotlib/pyplot.py\", line 2773, in pcolormesh\r\n    __ret = gca().pcolormesh(\r\n            ^^^^^^^^^^^^^^^^^\r\n  File \"[conda-env-path]/lib/python3.11/site-packages/matplotlib/__init__.py\", line 1442, in inner\r\n    return func(ax, *map(sanitize_sequence, args), **kwargs)\r\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n  File \"[conda-env-path]/lib/python3.11/site-packages/matplotlib/axes/_axes.py\", line 6220, in pcolormesh\r\n    X, Y, C, shading = self._pcolorargs('pcolormesh', *args,\r\n                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n  File \"[conda-env-path]/lib/python3.11/site-packages/matplotlib/axes/_axes.py\", line 5704, in _pcolorargs\r\n    C = cbook.safe_masked_invalid(C)\r\n        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n  File \"[conda-env-path]/lib/python3.11/site-packages/matplotlib/cbook/__init__.py\", line 715, in safe_masked_invalid\r\n    xm = np.ma.masked_invalid(x, copy=False)\r\n         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n  File \"[conda-env-path]/lib/python3.11/site-packages/numpy/ma/core.py\", line 2360, in masked_invalid\r\n    res = masked_where(~(np.isfinite(a)), a, copy=copy)\r\n          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n  File \"[conda-env-path]/lib/python3.11/site-packages/numpy/ma/core.py\", line 1942, in masked_where\r\n    result.mask = _shrink_mask(cond)\r\n    ^^^^^^^^^^^\r\n  File \"[conda-env-path]/lib/python3.11/site-packages/numpy/ma/core.py\", line 3516, in mask\r\n    self.__setmask__(value)\r\n  File \"[conda-env-path]/lib/python3.11/site-packages/numpy/ma/core.py\", line 3462, in __setmask__\r\n    current_mask.flat = mask\r\n    ^^^^^^^^^^^^^^^^^\r\nValueError: array is read-only\r\n```\n\n### Expected outcome\n\nNo error\n\n### Additional information\n\nThe code above runs fine with numpy v1.23, although the output from `broadcast_to` was already read-only at that version.  From numpy release notes, this looks like the likely reason for the change:\r\nhttps://numpy.org/doc/stable/release/1.24.0-notes.html#masked-invalid-now-modifies-the-mask-in-place\r\n\r\nAside from the new error, if a user passes a masked array that has nans or infs at the unmasked points, we are modifying their input array with the call to `masked_invalid`.\r\n\r\nI guess we just need to take a copy somewhere?\n\n### Operating system\n\nRHEL7\n\n### Matplotlib Version\n\n3.7.1\n\n### Matplotlib Backend\n\nQtAgg\n\n### Python version\n\n3.11.3\n\n### Jupyter version\n\nN/A\n\n### Installation\n\nconda","author":{"url":"https://github.com/rcomer","@type":"Person","name":"rcomer"},"datePublished":"2023-06-08T09:28:32.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":2},"url":"https://github.com/26093/matplotlib/issues/26093"}

route-pattern/_view_fragments/issues/show/:user_id/:repository/:id/issue_layout(.:format)
route-controllervoltron_issues_fragments
route-actionissue_layout
fetch-noncev2:ab19599a-82a9-d4ef-8701-b16209988f53
current-catalog-service-hash81bb79d38c15960b92d99bca9288a9108c7a47b18f2423d0f6438c5b7bcd2114
request-idCCD8:272982:1B235B2:24A0A2E:6A536E3A
html-safe-noncecfcd20a56e0ba16a00b41d66433b2a49d4d451ea7098e929cb73062f0cb006e5
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJDQ0Q4OjI3Mjk4MjoxQjIzNUIyOjI0QTBBMkU6NkE1MzZFM0EiLCJ2aXNpdG9yX2lkIjoiNzg2NjY0NDQ3NDU5MTY2OTgxOCIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmacbb2d7bdff99b650b3d60dd0c4a85048695aceef67723ef25ad62f7460096b5c8
hovercard-subject-tagissue:1747475998
github-keyboard-shortcutsrepository,issues,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location///voltron/issues_fragments/issue_layout
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/_view_fragments/issues/show/matplotlib/matplotlib/26093/issue_layout
twitter:imagehttps://opengraph.githubassets.com/ae46aaf0c461e1275d573b557d718c1b4a0b68cf64bb6c9b644319836cf9f39c/matplotlib/matplotlib/issues/26093
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/ae46aaf0c461e1275d573b557d718c1b4a0b68cf64bb6c9b644319836cf9f39c/matplotlib/matplotlib/issues/26093
og:image:altBug summary When pcolormesh receives a masked array, it seems to be writing back to the mask. Since numpy 1.24 this now causes pcolormesh to fail if the mask is read-only. Code for reproduction imp...
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
og:author:usernamercomer
hostnamegithub.com
expected-hostnamegithub.com
Noneb9a586c06a05a7a86fc7e3f4dbd03e42f6869085879aa184aa6369456dbd50fb
turbo-cache-controlno-preview
go-importgithub.com/matplotlib/matplotlib git https://github.com/matplotlib/matplotlib.git
octolytics-dimension-user_id215947
octolytics-dimension-user_loginmatplotlib
octolytics-dimension-repository_id1385122
octolytics-dimension-repository_nwomatplotlib/matplotlib
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id1385122
octolytics-dimension-repository_network_root_nwomatplotlib/matplotlib
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release07a982c1d40157c619b364352b704c3ce66bb332
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/matplotlib/matplotlib/issues/26093#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmatplotlib%2Fmatplotlib%2Fissues%2F26093
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/open-source/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/open-source/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/enterprise/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmatplotlib%2Fmatplotlib%2Fissues%2F26093
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Fvoltron%2Fissues_fragments%2Fissue_layout&source=header-repo&source_repo=matplotlib%2Fmatplotlib
Reloadhttps://github.com/matplotlib/matplotlib/issues/26093
Reloadhttps://github.com/matplotlib/matplotlib/issues/26093
Reloadhttps://github.com/matplotlib/matplotlib/issues/26093
Please reload this pagehttps://github.com/matplotlib/matplotlib/issues/26093
matplotlib https://github.com/matplotlib
matplotlibhttps://github.com/matplotlib/matplotlib
Please reload this pagehttps://github.com/matplotlib/matplotlib/issues/26093
Notifications https://github.com/login?return_to=%2Fmatplotlib%2Fmatplotlib
Fork 8.4k https://github.com/login?return_to=%2Fmatplotlib%2Fmatplotlib
Star 23k https://github.com/login?return_to=%2Fmatplotlib%2Fmatplotlib
Code https://github.com/matplotlib/matplotlib
Issues 1.1k https://github.com/matplotlib/matplotlib/issues
Pull requests 408 https://github.com/matplotlib/matplotlib/pulls
Actions https://github.com/matplotlib/matplotlib/actions
Projects https://github.com/matplotlib/matplotlib/projects
Wiki https://github.com/matplotlib/matplotlib/wiki
Security and quality 0 https://github.com/matplotlib/matplotlib/security
Insights https://github.com/matplotlib/matplotlib/pulse
Code https://github.com/matplotlib/matplotlib
Issues https://github.com/matplotlib/matplotlib/issues
Pull requests https://github.com/matplotlib/matplotlib/pulls
Actions https://github.com/matplotlib/matplotlib/actions
Projects https://github.com/matplotlib/matplotlib/projects
Wiki https://github.com/matplotlib/matplotlib/wiki
Security and quality https://github.com/matplotlib/matplotlib/security
Insights https://github.com/matplotlib/matplotlib/pulse
#26223https://github.com/matplotlib/matplotlib/pull/26223
[Bug]: pcolormesh writing to input maskhttps://github.com/matplotlib/matplotlib/issues/26093#top
#26223https://github.com/matplotlib/matplotlib/pull/26223
topic: pcolor/pcolormeshhttps://github.com/matplotlib/matplotlib/issues?q=state%3Aopen%20label%3A%22topic%3A%20pcolor%2Fpcolormesh%22
v3.7.2https://github.com/matplotlib/matplotlib/milestone/81
https://github.com/rcomer
rcomerhttps://github.com/rcomer
on Jun 8, 2023https://github.com/matplotlib/matplotlib/issues/26093#issue-1747475998
https://numpy.org/doc/stable/release/1.24.0-notes.html#masked-invalid-now-modifies-the-mask-in-placehttps://numpy.org/doc/stable/release/1.24.0-notes.html#masked-invalid-now-modifies-the-mask-in-place
topic: pcolor/pcolormeshhttps://github.com/matplotlib/matplotlib/issues?q=state%3Aopen%20label%3A%22topic%3A%20pcolor%2Fpcolormesh%22
v3.7.2https://github.com/matplotlib/matplotlib/milestone/81
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.