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Title: [Bug]: Saving as PGF results in invalid code (fails when including it in Latex document) · Issue #21708 · matplotlib/matplotlib · GitHub

Open Graph Title: [Bug]: Saving as PGF results in invalid code (fails when including it in Latex document) · Issue #21708 · matplotlib/matplotlib

X Title: [Bug]: Saving as PGF results in invalid code (fails when including it in Latex document) · Issue #21708 · matplotlib/matplotlib

Description: Bug summary Hello, When I run the code below to make a histogram with logarithmic axis, the resulting pgf file is invalid - it appears to contain paths that are way out of bounds? Code for reproduction import matplotlib.pyplot as plt imp...

Open Graph Description: Bug summary Hello, When I run the code below to make a histogram with logarithmic axis, the resulting pgf file is invalid - it appears to contain paths that are way out of bounds? Code for reproduc...

X Description: Bug summary Hello, When I run the code below to make a histogram with logarithmic axis, the resulting pgf file is invalid - it appears to contain paths that are way out of bounds? Code for reproduc...

Opengraph URL: https://github.com/matplotlib/matplotlib/issues/21708

X: @github

direct link

Domain: github.com


Hey, it has json ld scripts:
{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"[Bug]: Saving as PGF results in invalid code (fails when including it in Latex document)","articleBody":"### Bug summary\r\n\r\nHello, When I run the code below to make a histogram with logarithmic axis, the resulting pgf file is invalid - it appears to contain paths that are way out of bounds?\r\n\r\n### Code for reproduction\r\n\r\n```python\r\nimport matplotlib.pyplot as plt\r\nimport numpy as np\r\n\r\n# I used seaborn for the theme, which makes it fail in a similar way, but it also fails without\r\n# import seaborn as sns\r\n# sns.set_theme(style=\"ticks\", color_codes=True)\r\n\r\n\r\n# Random weights with exponential distribution, 1M samples\r\nweights =  np.random.exponential(scale=1, size=1000000)\r\n\r\nmax_x = max(weights)\r\nplt.figure(figsize=(8, 5))\r\nplt.hist(weights, bins=np.arange(1, max_x + 1), log=True)\r\n\r\nplt.xlabel(\"Weight\")\r\nplt.ylabel(\"Frequency\")\r\nplt.title(\"Histogram of edge weights (N. of relations between two nodes)\")\r\nplt.tight_layout()\r\n    \r\n# plt.savefig(\"weight_distribution.pgf\", backend=\"pgf\") # This also fails but in a different way :D\r\nplt.savefig(\"weight_distribution.pgf\")\r\nplt.show()\r\n```\r\n\r\n\r\n### Actual outcome\r\n\r\nThis results in the following pgf file:\r\n\r\n\u003cdetails\u003e\r\n\r\n``` \r\n%% Creator: Matplotlib, PGF backend\r\n%%\r\n%% To include the figure in your LaTeX document, write\r\n%%   \\input{\u003cfilename\u003e.pgf}\r\n%%\r\n%% Make sure the required packages are loaded in your preamble\r\n%%   \\usepackage{pgf}\r\n%%\r\n%% Figures using additional raster images can only be included by \\input if\r\n%% they are in the same directory as the main LaTeX file. For loading figures\r\n%% from other directories you can use the `import` package\r\n%%   \\usepackage{import}\r\n%%\r\n%% and then include the figures with\r\n%%   \\import{\u003cpath to file\u003e}{\u003cfilename\u003e.pgf}\r\n%%\r\n%% Matplotlib used the following preamble\r\n%%   \\usepackage{fontspec}\r\n%%   \\setmainfont{DejaVuSerif.ttf}[Path=\\detokenize{/home/ldorigo/Dropbox/studies/SDU/BP/Code/medrel_venv/lib/python3.9/site-packages/matplotlib/mpl-data/fonts/ttf/}]\r\n%%   \\setsansfont{DejaVuSans.ttf}[Path=\\detokenize{/home/ldorigo/Dropbox/studies/SDU/BP/Code/medrel_venv/lib/python3.9/site-packages/matplotlib/mpl-data/fonts/ttf/}]\r\n%%   \\setmonofont{DejaVuSansMono.ttf}[Path=\\detokenize{/home/ldorigo/Dropbox/studies/SDU/BP/Code/medrel_venv/lib/python3.9/site-packages/matplotlib/mpl-data/fonts/ttf/}]\r\n%%\r\n\\begingroup%\r\n\\makeatletter%\r\n\\begin{pgfpicture}%\r\n\\pgfpathrectangle{\\pgfpointorigin}{\\pgfqpoint{8.000000in}{5.000000in}}%\r\n\\pgfusepath{use as 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6}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\pgfsetbuttcap%\r\n\\pgfsetroundjoin%\r\n\\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetfillcolor{currentfill}%\r\n\\pgfsetlinewidth{0.803000pt}%\r\n\\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{currentstroke}%\r\n\\pgfsetdash{}{0pt}%\r\n\\pgfsys@defobject{currentmarker}{\\pgfqpoint{0.000000in}{-0.048611in}}{\\pgfqpoint{0.000000in}{0.000000in}}{%\r\n\\pgfpathmoveto{\\pgfqpoint{0.000000in}{0.000000in}}%\r\n\\pgfpathlineto{\\pgfqpoint{0.000000in}{-0.048611in}}%\r\n\\pgfusepath{stroke,fill}%\r\n}%\r\n\\begin{pgfscope}%\r\n\\pgfsys@transformshift{4.818112in}{0.580556in}%\r\n\\pgfsys@useobject{currentmarker}{}%\r\n\\end{pgfscope}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{textcolor}%\r\n\\pgfsetfillcolor{textcolor}%\r\n\\pgftext[x=4.818112in,y=0.483333in,,top]{\\color{textcolor}\\sffamily\\fontsize{10.000000}{12.000000}\\selectfont 8}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\pgfsetbuttcap%\r\n\\pgfsetroundjoin%\r\n\\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetfillcolor{currentfill}%\r\n\\pgfsetlinewidth{0.803000pt}%\r\n\\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{currentstroke}%\r\n\\pgfsetdash{}{0pt}%\r\n\\pgfsys@defobject{currentmarker}{\\pgfqpoint{0.000000in}{-0.048611in}}{\\pgfqpoint{0.000000in}{0.000000in}}{%\r\n\\pgfpathmoveto{\\pgfqpoint{0.000000in}{0.000000in}}%\r\n\\pgfpathlineto{\\pgfqpoint{0.000000in}{-0.048611in}}%\r\n\\pgfusepath{stroke,fill}%\r\n}%\r\n\\begin{pgfscope}%\r\n\\pgfsys@transformshift{5.900929in}{0.580556in}%\r\n\\pgfsys@useobject{currentmarker}{}%\r\n\\end{pgfscope}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{textcolor}%\r\n\\pgfsetfillcolor{textcolor}%\r\n\\pgftext[x=5.900929in,y=0.483333in,,top]{\\color{textcolor}\\sffamily\\fontsize{10.000000}{12.000000}\\selectfont 10}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\pgfsetbuttcap%\r\n\\pgfsetroundjoin%\r\n\\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetfillcolor{currentfill}%\r\n\\pgfsetlinewidth{0.803000pt}%\r\n\\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{currentstroke}%\r\n\\pgfsetdash{}{0pt}%\r\n\\pgfsys@defobject{currentmarker}{\\pgfqpoint{0.000000in}{-0.048611in}}{\\pgfqpoint{0.000000in}{0.000000in}}{%\r\n\\pgfpathmoveto{\\pgfqpoint{0.000000in}{0.000000in}}%\r\n\\pgfpathlineto{\\pgfqpoint{0.000000in}{-0.048611in}}%\r\n\\pgfusepath{stroke,fill}%\r\n}%\r\n\\begin{pgfscope}%\r\n\\pgfsys@transformshift{6.983746in}{0.580556in}%\r\n\\pgfsys@useobject{currentmarker}{}%\r\n\\end{pgfscope}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{textcolor}%\r\n\\pgfsetfillcolor{textcolor}%\r\n\\pgftext[x=6.983746in,y=0.483333in,,top]{\\color{textcolor}\\sffamily\\fontsize{10.000000}{12.000000}\\selectfont 12}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{textcolor}%\r\n\\pgfsetfillcolor{textcolor}%\r\n\\pgftext[x=4.276703in,y=0.293365in,,top]{\\color{textcolor}\\sffamily\\fontsize{10.000000}{12.000000}\\selectfont 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base]{\\color{textcolor}\\sffamily\\fontsize{10.000000}{12.000000}\\selectfont \\(\\displaystyle {10^{1}}\\)}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\pgfsetbuttcap%\r\n\\pgfsetroundjoin%\r\n\\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetfillcolor{currentfill}%\r\n\\pgfsetlinewidth{0.803000pt}%\r\n\\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{currentstroke}%\r\n\\pgfsetdash{}{0pt}%\r\n\\pgfsys@defobject{currentmarker}{\\pgfqpoint{-0.048611in}{0.000000in}}{\\pgfqpoint{-0.000000in}{0.000000in}}{%\r\n\\pgfpathmoveto{\\pgfqpoint{-0.000000in}{0.000000in}}%\r\n\\pgfpathlineto{\\pgfqpoint{-0.048611in}{0.000000in}}%\r\n\\pgfusepath{stroke,fill}%\r\n}%\r\n\\begin{pgfscope}%\r\n\\pgfsys@transformshift{0.703406in}{1.910214in}%\r\n\\pgfsys@useobject{currentmarker}{}%\r\n\\end{pgfscope}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{textcolor}%\r\n\\pgfsetfillcolor{textcolor}%\r\n\\pgftext[x=0.404987in, y=1.857452in, left, base]{\\color{textcolor}\\sffamily\\fontsize{10.000000}{12.000000}\\selectfont \\(\\displaystyle {10^{2}}\\)}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\pgfsetbuttcap%\r\n\\pgfsetroundjoin%\r\n\\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetfillcolor{currentfill}%\r\n\\pgfsetlinewidth{0.803000pt}%\r\n\\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{currentstroke}%\r\n\\pgfsetdash{}{0pt}%\r\n\\pgfsys@defobject{currentmarker}{\\pgfqpoint{-0.048611in}{0.000000in}}{\\pgfqpoint{-0.000000in}{0.000000in}}{%\r\n\\pgfpathmoveto{\\pgfqpoint{-0.000000in}{0.000000in}}%\r\n\\pgfpathlineto{\\pgfqpoint{-0.048611in}{0.000000in}}%\r\n\\pgfusepath{stroke,fill}%\r\n}%\r\n\\begin{pgfscope}%\r\n\\pgfsys@transformshift{0.703406in}{2.662535in}%\r\n\\pgfsys@useobject{currentmarker}{}%\r\n\\end{pgfscope}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{textcolor}%\r\n\\pgfsetfillcolor{textcolor}%\r\n\\pgftext[x=0.404987in, y=2.609774in, left, base]{\\color{textcolor}\\sffamily\\fontsize{10.000000}{12.000000}\\selectfont \\(\\displaystyle {10^{3}}\\)}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\pgfsetbuttcap%\r\n\\pgfsetroundjoin%\r\n\\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetfillcolor{currentfill}%\r\n\\pgfsetlinewidth{0.803000pt}%\r\n\\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{currentstroke}%\r\n\\pgfsetdash{}{0pt}%\r\n\\pgfsys@defobject{currentmarker}{\\pgfqpoint{-0.048611in}{0.000000in}}{\\pgfqpoint{-0.000000in}{0.000000in}}{%\r\n\\pgfpathmoveto{\\pgfqpoint{-0.000000in}{0.000000in}}%\r\n\\pgfpathlineto{\\pgfqpoint{-0.048611in}{0.000000in}}%\r\n\\pgfusepath{stroke,fill}%\r\n}%\r\n\\begin{pgfscope}%\r\n\\pgfsys@transformshift{0.703406in}{3.414856in}%\r\n\\pgfsys@useobject{currentmarker}{}%\r\n\\end{pgfscope}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{textcolor}%\r\n\\pgfsetfillcolor{textcolor}%\r\n\\pgftext[x=0.404987in, y=3.362095in, left, base]{\\color{textcolor}\\sffamily\\fontsize{10.000000}{12.000000}\\selectfont \\(\\displaystyle {10^{4}}\\)}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\pgfsetbuttcap%\r\n\\pgfsetroundjoin%\r\n\\definecolor{currentfill}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetfillcolor{currentfill}%\r\n\\pgfsetlinewidth{0.803000pt}%\r\n\\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{currentstroke}%\r\n\\pgfsetdash{}{0pt}%\r\n\\pgfsys@defobject{currentmarker}{\\pgfqpoint{-0.048611in}{0.000000in}}{\\pgfqpoint{-0.000000in}{0.000000in}}{%\r\n\\pgfpathmoveto{\\pgfqpoint{-0.000000in}{0.000000in}}%\r\n\\pgfpathlineto{\\pgfqpoint{-0.048611in}{0.000000in}}%\r\n\\pgfusepath{stroke,fill}%\r\n}%\r\n\\begin{pgfscope}%\r\n\\pgfsys@transformshift{0.703406in}{4.167177in}%\r\n\\pgfsys@useobject{currentmarker}{}%\r\n\\end{pgfscope}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{textcolor}%\r\n\\pgfsetfillcolor{textcolor}%\r\n\\pgftext[x=0.404987in, y=4.114416in, left, 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Frequency}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\pgfsetrectcap%\r\n\\pgfsetmiterjoin%\r\n\\pgfsetlinewidth{0.803000pt}%\r\n\\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{currentstroke}%\r\n\\pgfsetdash{}{0pt}%\r\n\\pgfpathmoveto{\\pgfqpoint{0.703406in}{0.580556in}}%\r\n\\pgfpathlineto{\\pgfqpoint{0.703406in}{4.627778in}}%\r\n\\pgfusepath{stroke}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\pgfsetrectcap%\r\n\\pgfsetmiterjoin%\r\n\\pgfsetlinewidth{0.803000pt}%\r\n\\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{currentstroke}%\r\n\\pgfsetdash{}{0pt}%\r\n\\pgfpathmoveto{\\pgfqpoint{7.850000in}{0.580556in}}%\r\n\\pgfpathlineto{\\pgfqpoint{7.850000in}{4.627778in}}%\r\n\\pgfusepath{stroke}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\pgfsetrectcap%\r\n\\pgfsetmiterjoin%\r\n\\pgfsetlinewidth{0.803000pt}%\r\n\\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{currentstroke}%\r\n\\pgfsetdash{}{0pt}%\r\n\\pgfpathmoveto{\\pgfqpoint{0.703406in}{0.580556in}}%\r\n\\pgfpathlineto{\\pgfqpoint{7.850000in}{0.580556in}}%\r\n\\pgfusepath{stroke}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\pgfsetrectcap%\r\n\\pgfsetmiterjoin%\r\n\\pgfsetlinewidth{0.803000pt}%\r\n\\definecolor{currentstroke}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{currentstroke}%\r\n\\pgfsetdash{}{0pt}%\r\n\\pgfpathmoveto{\\pgfqpoint{0.703406in}{4.627778in}}%\r\n\\pgfpathlineto{\\pgfqpoint{7.850000in}{4.627778in}}%\r\n\\pgfusepath{stroke}%\r\n\\end{pgfscope}%\r\n\\begin{pgfscope}%\r\n\\definecolor{textcolor}{rgb}{0.000000,0.000000,0.000000}%\r\n\\pgfsetstrokecolor{textcolor}%\r\n\\pgfsetfillcolor{textcolor}%\r\n\\pgftext[x=4.276703in,y=4.711111in,,base]{\\color{textcolor}\\sffamily\\fontsize{12.000000}{14.400000}\\selectfont Histogram of edge weights (N. of relations between two nodes)}%\r\n\\end{pgfscope}%\r\n\\end{pgfpicture}%\r\n\\makeatother%\r\n\\endgroup%\r\n```\r\n\u003c/details\u003e\r\n\r\n[@tacaswell edited to fold very long output]\r\n\r\n### Expected outcome\r\n\r\nPgf output that can be rendered by Latex\r\n\r\n### Additional information\r\n\r\n_No response_\r\n\r\n### Operating system\r\n\r\nArch\r\n\r\n### Matplotlib Version\r\n\r\n3.4.3\r\n\r\n### Matplotlib Backend\r\n\r\npgf (I assume? not setting it explicitly but I'm saving as pgf)\r\n\r\n### Python version\r\n\r\n3.9\r\n\r\n### Jupyter version\r\n\r\n_No response_\r\n\r\n### Installation\r\n\r\npip","author":{"url":"https://github.com/ldorigo","@type":"Person","name":"ldorigo"},"datePublished":"2021-11-22T08:13:13.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":11},"url":"https://github.com/21708/matplotlib/issues/21708"}

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og:image:altBug summary Hello, When I run the code below to make a histogram with logarithmic axis, the resulting pgf file is invalid - it appears to contain paths that are way out of bounds? Code for reproduc...
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[Bug]: Saving as PGF results in invalid code (fails when including it in Latex document)https://github.com/matplotlib/matplotlib/issues/21708#top
backend: pgfhttps://github.com/matplotlib/matplotlib/issues?q=state%3Aopen%20label%3A%22backend%3A%20pgf%22
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