René's URL Explorer Experiment


Title: GitHub - mahajrod/VarDictJava: VarDict Java port · GitHub

Open Graph Title: GitHub - mahajrod/VarDictJava: VarDict Java port

X Title: GitHub - mahajrod/VarDictJava: VarDict Java port

Description: VarDict Java port. Contribute to mahajrod/VarDictJava development by creating an account on GitHub.

Open Graph Description: VarDict Java port. Contribute to mahajrod/VarDictJava development by creating an account on GitHub.

X Description: VarDict Java port. Contribute to mahajrod/VarDictJava development by creating an account on GitHub.

Opengraph URL: https://github.com/mahajrod/VarDictJava

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:e8de0e75-4708-6473-0aa9-eb7905eca961
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idD2C6:53AC5:B798BA:F3C6D4:6A5FE076
html-safe-noncee4abfb5e639f610da4738b9b0ac9a66d3ee27a59c25e6777a4f46ab7613532ab
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJEMkM2OjUzQUM1OkI3OThCQTpGM0M2RDQ6NkE1RkUwNzYiLCJ2aXNpdG9yX2lkIjoiMjc0MDU2MjgyMDI2MjI1Njc1OCIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmacf8bd0cbdd8e5d61fa10a44f2c1fff7c87fec84beffe785940a7acb9e9028e1d2
hovercard-subject-tagrepository:401102454
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/mahajrod/VarDictJava
twitter:imagehttps://opengraph.githubassets.com/1f29a7ebd79ca70003f65999cb52f1f900309b139f9d7f31de26ea4425dde3fd/mahajrod/VarDictJava
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/1f29a7ebd79ca70003f65999cb52f1f900309b139f9d7f31de26ea4425dde3fd/mahajrod/VarDictJava
og:image:altVarDict Java port. Contribute to mahajrod/VarDictJava development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None969ff9e74dfdb8c6005b9549cd5d4b367ffe20ba69031e1a0cfddaa5106944a2
turbo-cache-controlno-cache
go-importgithub.com/mahajrod/VarDictJava git https://github.com/mahajrod/VarDictJava.git
octolytics-dimension-user_id5405693
octolytics-dimension-user_loginmahajrod
octolytics-dimension-repository_id401102454
octolytics-dimension-repository_nwomahajrod/VarDictJava
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id26852732
octolytics-dimension-repository_parent_nwoAstraZeneca-NGS/VarDictJava
octolytics-dimension-repository_network_root_id26852732
octolytics-dimension-repository_network_root_nwoAstraZeneca-NGS/VarDictJava
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasefa4da66e0ab40d3a24db059b9ddcf8a2f49202c4
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/mahajrod/VarDictJava#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmahajrod%2FVarDictJava
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
Code QualityEnforce quality at mergehttps://github.com/features/code-quality
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/open-source/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/open-source/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/enterprise/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmahajrod%2FVarDictJava
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=mahajrod%2FVarDictJava
Reloadhttps://github.com/mahajrod/VarDictJava
Reloadhttps://github.com/mahajrod/VarDictJava
Reloadhttps://github.com/mahajrod/VarDictJava
mahajrod https://github.com/mahajrod
VarDictJavahttps://github.com/mahajrod/VarDictJava
AstraZeneca-NGS/VarDictJavahttps://github.com/AstraZeneca-NGS/VarDictJava
Notifications https://github.com/login?return_to=%2Fmahajrod%2FVarDictJava
Fork 0 https://github.com/login?return_to=%2Fmahajrod%2FVarDictJava
Star 0 https://github.com/login?return_to=%2Fmahajrod%2FVarDictJava
Code https://github.com/mahajrod/VarDictJava
Pull requests 0 https://github.com/mahajrod/VarDictJava/pulls
Actions https://github.com/mahajrod/VarDictJava/actions
Projects https://github.com/mahajrod/VarDictJava/projects
Security and quality 0 https://github.com/mahajrod/VarDictJava/security
Insights https://github.com/mahajrod/VarDictJava/pulse
Code https://github.com/mahajrod/VarDictJava
Pull requests https://github.com/mahajrod/VarDictJava/pulls
Actions https://github.com/mahajrod/VarDictJava/actions
Projects https://github.com/mahajrod/VarDictJava/projects
Security and quality https://github.com/mahajrod/VarDictJava/security
Insights https://github.com/mahajrod/VarDictJava/pulse
https://github.com/mahajrod/VarDictJava
Brancheshttps://github.com/mahajrod/VarDictJava/branches
Tagshttps://github.com/mahajrod/VarDictJava/tags
https://github.com/mahajrod/VarDictJava/branches
https://github.com/mahajrod/VarDictJava/tags
504 Commitshttps://github.com/mahajrod/VarDictJava/commits/master/
https://github.com/mahajrod/VarDictJava/commits/master/
VarDict @ f48bf3bhttps://github.com/AstraZeneca-NGS/VarDict/tree/f48bf3b0b1c51bc4fd2e6db6b27a7db7f313c846
VarDict @ f48bf3bhttps://github.com/AstraZeneca-NGS/VarDict/tree/f48bf3b0b1c51bc4fd2e6db6b27a7db7f313c846
disthttps://github.com/mahajrod/VarDictJava/tree/master/dist
disthttps://github.com/mahajrod/VarDictJava/tree/master/dist
githttps://github.com/mahajrod/VarDictJava/tree/master/git
githttps://github.com/mahajrod/VarDictJava/tree/master/git
gradle/wrapperhttps://github.com/mahajrod/VarDictJava/tree/master/gradle/wrapper
gradle/wrapperhttps://github.com/mahajrod/VarDictJava/tree/master/gradle/wrapper
srchttps://github.com/mahajrod/VarDictJava/tree/master/src
srchttps://github.com/mahajrod/VarDictJava/tree/master/src
testdatahttps://github.com/mahajrod/VarDictJava/tree/master/testdata
testdatahttps://github.com/mahajrod/VarDictJava/tree/master/testdata
tests/integrationhttps://github.com/mahajrod/VarDictJava/tree/master/tests/integration
tests/integrationhttps://github.com/mahajrod/VarDictJava/tree/master/tests/integration
.gitignorehttps://github.com/mahajrod/VarDictJava/blob/master/.gitignore
.gitignorehttps://github.com/mahajrod/VarDictJava/blob/master/.gitignore
.gitmoduleshttps://github.com/mahajrod/VarDictJava/blob/master/.gitmodules
.gitmoduleshttps://github.com/mahajrod/VarDictJava/blob/master/.gitmodules
.java-versionhttps://github.com/mahajrod/VarDictJava/blob/master/.java-version
.java-versionhttps://github.com/mahajrod/VarDictJava/blob/master/.java-version
.travis.ymlhttps://github.com/mahajrod/VarDictJava/blob/master/.travis.yml
.travis.ymlhttps://github.com/mahajrod/VarDictJava/blob/master/.travis.yml
LICENSEhttps://github.com/mahajrod/VarDictJava/blob/master/LICENSE
LICENSEhttps://github.com/mahajrod/VarDictJava/blob/master/LICENSE
Readme.mdhttps://github.com/mahajrod/VarDictJava/blob/master/Readme.md
Readme.mdhttps://github.com/mahajrod/VarDictJava/blob/master/Readme.md
build.gradlehttps://github.com/mahajrod/VarDictJava/blob/master/build.gradle
build.gradlehttps://github.com/mahajrod/VarDictJava/blob/master/build.gradle
changelog.txthttps://github.com/mahajrod/VarDictJava/blob/master/changelog.txt
changelog.txthttps://github.com/mahajrod/VarDictJava/blob/master/changelog.txt
gradlewhttps://github.com/mahajrod/VarDictJava/blob/master/gradlew
gradlewhttps://github.com/mahajrod/VarDictJava/blob/master/gradlew
gradlew.bathttps://github.com/mahajrod/VarDictJava/blob/master/gradlew.bat
gradlew.bathttps://github.com/mahajrod/VarDictJava/blob/master/gradlew.bat
settings.gradlehttps://github.com/mahajrod/VarDictJava/blob/master/settings.gradle
settings.gradlehttps://github.com/mahajrod/VarDictJava/blob/master/settings.gradle
READMEhttps://github.com/mahajrod/VarDictJava
MIT licensehttps://github.com/mahajrod/VarDictJava
https://bioconda.github.io/recipes/vardict-java/README.html
https://usegalaxy.eu/root?tool_id=vardict_java
https://github.com/mahajrod/VarDictJava#vardictjava
https://github.com/mahajrod/VarDictJava#introduction
VarDict variant callerhttps://github.com/AstraZeneca-NGS/VarDict
https://academic.oup.com/nar/article/44/11/e108/2468301?searchresult=1https://academic.oup.com/nar/article/44/11/e108/2468301?searchresult=1
https://github.com/mahajrod/VarDictJava#requirements
https://github.com/mahajrod/VarDictJava#getting-started
https://github.com/mahajrod/VarDictJava#getting-source-code
https://github.com/AstraZeneca-NGS/VarDictJavahttps://github.com/AstraZeneca-NGS/VarDictJava
https://github.com/mahajrod/VarDictJava#compiling
Gradlehttp://gradle.org/
https://github.com/mahajrod/VarDictJava#distribution-package-structure
https://github.com/mahajrod/VarDictJava#third-party-libraries
http://jregex.sourceforge.nethttp://jregex.sourceforge.net
http://commons.apache.org/proper/commons-clihttp://commons.apache.org/proper/commons-cli
http://samtools.github.io/htsjdk/http://samtools.github.io/htsjdk/
https://github.com/mahajrod/VarDictJava#single-sample-mode
https://github.com/mahajrod/VarDictJava#paired-variant-calling
https://github.com/mahajrod/VarDictJava#amplicon-based-calling
https://github.com/mahajrod/VarDictJava#running-tests
https://github.com/mahajrod/VarDictJava#integration-testing
https://github.com/mahajrod/VarDictJava#user-extension-of-testcases
Test cases file formathttps://github.com/mahajrod/VarDictJava/blob/master/Readme.md#CSVhead
thin-FASTAhttps://github.com/mahajrod/VarDictJava/blob/master/Readme.md#thFastahead
https://github.com/mahajrod/VarDictJava#test-cases-file-format
https://github.com/mahajrod/VarDictJava#test-coverage-report
https://github.com/mahajrod/VarDictJava#thin-fasta-format
https://github.com/mahajrod/VarDictJava#program-workflow
https://github.com/mahajrod/VarDictJava#the-main-workflow
Variant filteringhttps://github.com/mahajrod/VarDictJava/blob/master/Readme.md#VarFiltering
https://github.com/mahajrod/VarDictJava#cigar-preprocessing-initial-realignment
https://github.com/mahajrod/VarDictJava#variants
https://github.com/mahajrod/VarDictJava#variant-description-string
https://github.com/mahajrod/VarDictJava#variant-filtering
https://github.com/mahajrod/VarDictJava#bias-flag-explanation
https://github.com/mahajrod/VarDictJava#variant-classification-in-pairedsomatic-analysis
https://github.com/mahajrod/VarDictJava#program-options
https://github.com/mahajrod/VarDictJava#vardictjava-options
https://github.com/mahajrod/VarDictJava#important-var2vcf_validpl-options
https://github.com/mahajrod/VarDictJava#important-var2vcf_pairedpl-options
https://github.com/mahajrod/VarDictJava#output-columns
https://github.com/mahajrod/VarDictJava#simple-mode
https://github.com/mahajrod/VarDictJava#amplicon-mode
https://github.com/mahajrod/VarDictJava#somatic-mode
https://github.com/mahajrod/VarDictJava#input-files
https://github.com/mahajrod/VarDictJava#bed-file--regions
https://github.com/mahajrod/VarDictJava#fasta-file---reference-genome
https://github.com/mahajrod/VarDictJava#errors-and-warnings
wikihttps://github.com/AstraZeneca-NGS/VarDictJava/wiki
https://github.com/mahajrod/VarDictJava#license
MIT licensehttp://www.opensource.org/licenses/mit-license.html
https://github.com/mahajrod/VarDictJava#contributors
VarDicthttps://github.com/AstraZeneca-NGS/VarDict
Zhongwu Laihttps://github.com/zhongwulai
Viktor Kirsthttps://github.com/vkirst
Zaal Lyanovhttps://github.com/jabbarish
Readme https://github.com/mahajrod/VarDictJava#readme-ov-file
MIT license https://github.com/mahajrod/VarDictJava#MIT-1-ov-file
Please reload this pagehttps://github.com/mahajrod/VarDictJava
Activityhttps://github.com/mahajrod/VarDictJava/activity
0 forkshttps://github.com/mahajrod/VarDictJava/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fmahajrod%2FVarDictJava&report=mahajrod+%28user%29
Releaseshttps://github.com/mahajrod/VarDictJava/releases
34 tags https://github.com/mahajrod/VarDictJava/tags
Packages 0https://github.com/users/mahajrod/packages?repo_name=VarDictJava
Please reload this pagehttps://github.com/mahajrod/VarDictJava
Contributorshttps://github.com/mahajrod/VarDictJava/graphs/contributors
Please reload this pagehttps://github.com/mahajrod/VarDictJava
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.