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Title: GitHub - lutsik/CellTypeInferenceMethods: A public list of computational methods for cell type inference from genome-scale DNA methylation data · GitHub

Open Graph Title: GitHub - lutsik/CellTypeInferenceMethods: A public list of computational methods for cell type inference from genome-scale DNA methylation data

X Title: GitHub - lutsik/CellTypeInferenceMethods: A public list of computational methods for cell type inference from genome-scale DNA methylation data

Description: A public list of computational methods for cell type inference from genome-scale DNA methylation data - lutsik/CellTypeInferenceMethods

Open Graph Description: A public list of computational methods for cell type inference from genome-scale DNA methylation data - lutsik/CellTypeInferenceMethods

X Description: A public list of computational methods for cell type inference from genome-scale DNA methylation data - lutsik/CellTypeInferenceMethods

Opengraph URL: https://github.com/lutsik/CellTypeInferenceMethods

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https://github.com/lutsik/CellTypeInferenceMethods#cell-type-inference-methods
https://github.com/lutsik/CellTypeInferenceMethods#reference-based-methods
https://github.com/lutsik/CellTypeInferenceMethods#conceptually-new-reference-based-estimation-methods
PMID 22568884https://www.ncbi.nlm.nih.gov/pubmed/22568884
methylSpectrum (R, script)http://people.oregonstate.edu/~housemae/software/Houseman-2012-BMCBioinformatics-Software-v112.zip
minfi (R, BioC)https://bioconductor.org/packages/release/bioc/html/minfi.html
RnBeads (R, BioC)https://www.bioconductor.org/packages/release/bioc/html/RnBeads.html
PMID 23426267https://www.ncbi.nlm.nih.gov/pubmed/23426267
CETS project on r-forge (R)http://cets.r-forge.r-project.org
PMID 28517979https://www.ncbi.nlm.nih.gov/pubmed/28517979
EpiDISH (R, Bioc)https://bioconductor.org/packages/release/bioc/html/EpiDISH.html
https://github.com/lutsik/CellTypeInferenceMethods#methods-for-the-optimal-search-of-the-cell-type-specific-cpg-libraries
PMID 26956433https://www.ncbi.nlm.nih.gov/pubmed/26956433
PMID 30104673https://www.ncbi.nlm.nih.gov/pubmed/30104673
R package (Zenodo)https://zenodo.org/record/1298968#.XAxXqS2ZMWo
https://github.com/lutsik/CellTypeInferenceMethods#reference-free-methods
https://github.com/lutsik/CellTypeInferenceMethods#reference-free-methods-for-the-correction-of-differential-methylation-analysis
PMID 24464286https://www.ncbi.nlm.nih.gov/pubmed/24464286
FaST-LMM-EWASHer (R)https://www.microsoft.com/en-us/download/details.aspx?id=52501
PMID 24451622https://www.ncbi.nlm.nih.gov/pubmed/24451622
RefFreeEWAS (R, CRAN)https://cran.r-project.org/package=RefFreeEWAS
PMID 27018579https://www.ncbi.nlm.nih.gov/pubmed/27018579
ReFACTor (R,MATLAB)https://www.cs.tau.ac.il/~heran/cozygene/software/refactor.html
GLINT (python)https://glint-epigenetics.readthedocs.io/en/latest/
https://github.com/lutsik/CellTypeInferenceMethods#reference-free-deconvolution-methods
PMID 27358049https://www.ncbi.nlm.nih.gov/pubmed/27358049
RefFreeEWAS (R,CRAN)https://cran.r-project.org/package=RefFreeEWAS
PMID 27851969https://www.ncbi.nlm.nih.gov/pubmed/27851969
EDec (R, GitHub)https://github.com/BRL-BCM/EDec
PMID 28340624https://www.ncbi.nlm.nih.gov/pubmed/28340624
MeDeCom (R, GitHub)https://github.com/lutsik/MeDeCom
https://github.com/lutsik/CellTypeInferenceMethods#benchmarking-studies
https://www.ncbi.nlm.nih.gov/pubmed/28410574https://www.ncbi.nlm.nih.gov/pubmed/28410574
https://www.biorxiv.org/content/10.1101/570457v1.abstracthttps://www.biorxiv.org/content/10.1101/570457v1.abstract
https://www.ncbi.nlm.nih.gov/pubmed/30571772https://www.ncbi.nlm.nih.gov/pubmed/30571772
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