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Title: GitHub - luciansmith/kuhner-python: Python programs written for the Kuhner lab

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Python program structure.pptx	https://github.com/luciansmith/kuhner-python/blob/master/Python%20program%20structure.pptx
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assemble_ploidy_evidence.py	https://github.com/luciansmith/kuhner-python/blob/master/assemble_ploidy_evidence.py
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branch_lengths_and_signature_calculator.py	https://github.com/luciansmith/kuhner-python/blob/master/branch_lengths_and_signature_calculator.py
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create_pASCAT_input.py	https://github.com/luciansmith/kuhner-python/blob/master/create_pASCAT_input.py
create_ploidy_estimates_from_pASCAT.py	https://github.com/luciansmith/kuhner-python/blob/master/create_ploidy_estimates_from_pASCAT.py
create_ploidy_estimates_from_pASCAT.py	https://github.com/luciansmith/kuhner-python/blob/master/create_ploidy_estimates_from_pASCAT.py
create_rejoined_histograms.py	https://github.com/luciansmith/kuhner-python/blob/master/create_rejoined_histograms.py
create_rejoined_histograms.py	https://github.com/luciansmith/kuhner-python/blob/master/create_rejoined_histograms.py
create_seglength_histograms.py	https://github.com/luciansmith/kuhner-python/blob/master/create_seglength_histograms.py
create_seglength_histograms.py	https://github.com/luciansmith/kuhner-python/blob/master/create_seglength_histograms.py
distribute_BEAST.py	https://github.com/luciansmith/kuhner-python/blob/master/distribute_BEAST.py
distribute_BEAST.py	https://github.com/luciansmith/kuhner-python/blob/master/distribute_BEAST.py
estimate_gamma.py	https://github.com/luciansmith/kuhner-python/blob/master/estimate_gamma.py
estimate_gamma.py	https://github.com/luciansmith/kuhner-python/blob/master/estimate_gamma.py
exome2Expands.py	https://github.com/luciansmith/kuhner-python/blob/master/exome2Expands.py
exome2Expands.py	https://github.com/luciansmith/kuhner-python/blob/master/exome2Expands.py
extract_CN_from_Jabba.py	https://github.com/luciansmith/kuhner-python/blob/master/extract_CN_from_Jabba.py
extract_CN_from_Jabba.py	https://github.com/luciansmith/kuhner-python/blob/master/extract_CN_from_Jabba.py
findVAFHistogramPeaks.py	https://github.com/luciansmith/kuhner-python/blob/master/findVAFHistogramPeaks.py
findVAFHistogramPeaks.py	https://github.com/luciansmith/kuhner-python/blob/master/findVAFHistogramPeaks.py
find_SNP_groups.py	https://github.com/luciansmith/kuhner-python/blob/master/find_SNP_groups.py
find_SNP_groups.py	https://github.com/luciansmith/kuhner-python/blob/master/find_SNP_groups.py
find_VAF_peaks.py	https://github.com/luciansmith/kuhner-python/blob/master/find_VAF_peaks.py
find_VAF_peaks.py	https://github.com/luciansmith/kuhner-python/blob/master/find_VAF_peaks.py
find_deletions.py	https://github.com/luciansmith/kuhner-python/blob/master/find_deletions.py
find_deletions.py	https://github.com/luciansmith/kuhner-python/blob/master/find_deletions.py
find_dupes.py	https://github.com/luciansmith/kuhner-python/blob/master/find_dupes.py
find_dupes.py	https://github.com/luciansmith/kuhner-python/blob/master/find_dupes.py
find_example_loss.py	https://github.com/luciansmith/kuhner-python/blob/master/find_example_loss.py
find_example_loss.py	https://github.com/luciansmith/kuhner-python/blob/master/find_example_loss.py
find_example_loss_rejoined.py	https://github.com/luciansmith/kuhner-python/blob/master/find_example_loss_rejoined.py
find_example_loss_rejoined.py	https://github.com/luciansmith/kuhner-python/blob/master/find_example_loss_rejoined.py
find_p16.py	https://github.com/luciansmith/kuhner-python/blob/master/find_p16.py
find_p16.py	https://github.com/luciansmith/kuhner-python/blob/master/find_p16.py
four_gamete_persample.py	https://github.com/luciansmith/kuhner-python/blob/master/four_gamete_persample.py
four_gamete_persample.py	https://github.com/luciansmith/kuhner-python/blob/master/four_gamete_persample.py
four_gamete_test.py	https://github.com/luciansmith/kuhner-python/blob/master/four_gamete_test.py
four_gamete_test.py	https://github.com/luciansmith/kuhner-python/blob/master/four_gamete_test.py
full_segmentation_analysis.py	https://github.com/luciansmith/kuhner-python/blob/master/full_segmentation_analysis.py
full_segmentation_analysis.py	https://github.com/luciansmith/kuhner-python/blob/master/full_segmentation_analysis.py
full_segmentation_by_position_creator.py	https://github.com/luciansmith/kuhner-python/blob/master/full_segmentation_by_position_creator.py
full_segmentation_by_position_creator.py	https://github.com/luciansmith/kuhner-python/blob/master/full_segmentation_by_position_creator.py
full_segmentation_histogram_creator.py	https://github.com/luciansmith/kuhner-python/blob/master/full_segmentation_histogram_creator.py
full_segmentation_histogram_creator.py	https://github.com/luciansmith/kuhner-python/blob/master/full_segmentation_histogram_creator.py
getCNVs.py	https://github.com/luciansmith/kuhner-python/blob/master/getCNVs.py
getCNVs.py	https://github.com/luciansmith/kuhner-python/blob/master/getCNVs.py
getChromosomeCentromere.py	https://github.com/luciansmith/kuhner-python/blob/master/getChromosomeCentromere.py
getChromosomeCentromere.py	https://github.com/luciansmith/kuhner-python/blob/master/getChromosomeCentromere.py
get_noninteger_CN_from_ASCAT.py	https://github.com/luciansmith/kuhner-python/blob/master/get_noninteger_CN_from_ASCAT.py
get_noninteger_CN_from_ASCAT.py	https://github.com/luciansmith/kuhner-python/blob/master/get_noninteger_CN_from_ASCAT.py
hand_cluster_mutation_vecs.py	https://github.com/luciansmith/kuhner-python/blob/master/hand_cluster_mutation_vecs.py
hand_cluster_mutation_vecs.py	https://github.com/luciansmith/kuhner-python/blob/master/hand_cluster_mutation_vecs.py
highlownoisevals.py	https://github.com/luciansmith/kuhner-python/blob/master/highlownoisevals.py
highlownoisevals.py	https://github.com/luciansmith/kuhner-python/blob/master/highlownoisevals.py
lucianSNPLibrary.py	https://github.com/luciansmith/kuhner-python/blob/master/lucianSNPLibrary.py
lucianSNPLibrary.py	https://github.com/luciansmith/kuhner-python/blob/master/lucianSNPLibrary.py
makeBoxPlotForPatty.py	https://github.com/luciansmith/kuhner-python/blob/master/makeBoxPlotForPatty.py
makeBoxPlotForPatty.py	https://github.com/luciansmith/kuhner-python/blob/master/makeBoxPlotForPatty.py
make_VAF_histograms.py	https://github.com/luciansmith/kuhner-python/blob/master/make_VAF_histograms.py
make_VAF_histograms.py	https://github.com/luciansmith/kuhner-python/blob/master/make_VAF_histograms.py
make_gamma_test_sge_files.py	https://github.com/luciansmith/kuhner-python/blob/master/make_gamma_test_sge_files.py
make_gamma_test_sge_files.py	https://github.com/luciansmith/kuhner-python/blob/master/make_gamma_test_sge_files.py
make_overlap_probesets.py	https://github.com/luciansmith/kuhner-python/blob/master/make_overlap_probesets.py
make_overlap_probesets.py	https://github.com/luciansmith/kuhner-python/blob/master/make_overlap_probesets.py
make_overlap_three_probesets.py	https://github.com/luciansmith/kuhner-python/blob/master/make_overlap_three_probesets.py
make_overlap_three_probesets.py	https://github.com/luciansmith/kuhner-python/blob/master/make_overlap_three_probesets.py
make_pASCAT_sge_files.py	https://github.com/luciansmith/kuhner-python/blob/master/make_pASCAT_sge_files.py
make_pASCAT_sge_files.py	https://github.com/luciansmith/kuhner-python/blob/master/make_pASCAT_sge_files.py
make_phylip_levels_parsimony_input.py	https://github.com/luciansmith/kuhner-python/blob/master/make_phylip_levels_parsimony_input.py
make_phylip_levels_parsimony_input.py	https://github.com/luciansmith/kuhner-python/blob/master/make_phylip_levels_parsimony_input.py
make_phylip_parsimony_input.py	https://github.com/luciansmith/kuhner-python/blob/master/make_phylip_parsimony_input.py
make_phylip_parsimony_input.py	https://github.com/luciansmith/kuhner-python/blob/master/make_phylip_parsimony_input.py
make_phylip_seqboot_input.py	https://github.com/luciansmith/kuhner-python/blob/master/make_phylip_seqboot_input.py
make_phylip_seqboot_input.py	https://github.com/luciansmith/kuhner-python/blob/master/make_phylip_seqboot_input.py
make_run_thinned.py	https://github.com/luciansmith/kuhner-python/blob/master/make_run_thinned.py
make_run_thinned.py	https://github.com/luciansmith/kuhner-python/blob/master/make_run_thinned.py
make_shuffled_directories.py	https://github.com/luciansmith/kuhner-python/blob/master/make_shuffled_directories.py
make_shuffled_directories.py	https://github.com/luciansmith/kuhner-python/blob/master/make_shuffled_directories.py
makeround2.py	https://github.com/luciansmith/kuhner-python/blob/master/makeround2.py
makeround2.py	https://github.com/luciansmith/kuhner-python/blob/master/makeround2.py
mary_VAFHistogramPeaks.py	https://github.com/luciansmith/kuhner-python/blob/master/mary_VAFHistogramPeaks.py
mary_VAFHistogramPeaks.py	https://github.com/luciansmith/kuhner-python/blob/master/mary_VAFHistogramPeaks.py
median_calc.py	https://github.com/luciansmith/kuhner-python/blob/master/median_calc.py
median_calc.py	https://github.com/luciansmith/kuhner-python/blob/master/median_calc.py
new_cluster_VAFs.py	https://github.com/luciansmith/kuhner-python/blob/master/new_cluster_VAFs.py
new_cluster_VAFs.py	https://github.com/luciansmith/kuhner-python/blob/master/new_cluster_VAFs.py
new_mutation.py	https://github.com/luciansmith/kuhner-python/blob/master/new_mutation.py
new_mutation.py	https://github.com/luciansmith/kuhner-python/blob/master/new_mutation.py
output_teeth_stomach_statuses.py	https://github.com/luciansmith/kuhner-python/blob/master/output_teeth_stomach_statuses.py
output_teeth_stomach_statuses.py	https://github.com/luciansmith/kuhner-python/blob/master/output_teeth_stomach_statuses.py
p_rawsegs.py	https://github.com/luciansmith/kuhner-python/blob/master/p_rawsegs.py
p_rawsegs.py	https://github.com/luciansmith/kuhner-python/blob/master/p_rawsegs.py
README	https://github.com/luciansmith/kuhner-python
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