René's URL Explorer Experiment


Title: GitHub - llnl/protlib-designer: Integer Linear Programming for Protein Library Design · GitHub

Open Graph Title: GitHub - llnl/protlib-designer: Integer Linear Programming for Protein Library Design

X Title: GitHub - llnl/protlib-designer: Integer Linear Programming for Protein Library Design

Description: Integer Linear Programming for Protein Library Design - llnl/protlib-designer

Open Graph Description: Integer Linear Programming for Protein Library Design - llnl/protlib-designer

X Description: Integer Linear Programming for Protein Library Design - llnl/protlib-designer

Opengraph URL: https://github.com/llnl/protlib-designer

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:4dff678b-3618-63be-a0ed-273cc8fbcb1c
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idB1B4:1F0127:3057F4:443ECB:6A4BC50E
html-safe-nonce328d945e4ef9cc1e203d8d94bdda91b1c1ef9d637dab7ded1716130349fec68a
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJCMUI0OjFGMDEyNzozMDU3RjQ6NDQzRUNCOjZBNEJDNTBFIiwidmlzaXRvcl9pZCI6IjQ4NjE3NzY3MzAyOTE2ODQ2MjIiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac17e14e88f86fc0b700572bd64b76ff1b51844f3228393744000d4b0044a63505
hovercard-subject-tagrepository:915108816
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/llnl/protlib-designer
twitter:imagehttps://repository-images.githubusercontent.com/915108816/729e5c7b-a89b-43be-971e-434218b887ce
twitter:cardsummary_large_image
og:imagehttps://repository-images.githubusercontent.com/915108816/729e5c7b-a89b-43be-971e-434218b887ce
og:image:altInteger Linear Programming for Protein Library Design - llnl/protlib-designer
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None14aa00ce5bdb34d0eefb5facbffd7de9e144c688d8a93ef8df902d5f94b51dd7
turbo-cache-controlno-cache
go-importgithub.com/llnl/protlib-designer git https://github.com/llnl/protlib-designer.git
octolytics-dimension-user_id5921419
octolytics-dimension-user_loginllnl
octolytics-dimension-repository_id915108816
octolytics-dimension-repository_nwollnl/protlib-designer
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id915108816
octolytics-dimension-repository_network_root_nwollnl/protlib-designer
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release58b8f89190447502561829f30862aa0a99d53367
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/llnl/protlib-designer#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fllnl%2Fprotlib-designer
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fllnl%2Fprotlib-designer
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=llnl%2Fprotlib-designer
Reloadhttps://github.com/llnl/protlib-designer
Reloadhttps://github.com/llnl/protlib-designer
Reloadhttps://github.com/llnl/protlib-designer
Please reload this pagehttps://github.com/llnl/protlib-designer
llnl https://github.com/llnl
protlib-designerhttps://github.com/llnl/protlib-designer
Notifications https://github.com/login?return_to=%2Fllnl%2Fprotlib-designer
Fork 2 https://github.com/login?return_to=%2Fllnl%2Fprotlib-designer
Star 9 https://github.com/login?return_to=%2Fllnl%2Fprotlib-designer
Code https://github.com/llnl/protlib-designer
Issues 0 https://github.com/llnl/protlib-designer/issues
Pull requests 1 https://github.com/llnl/protlib-designer/pulls
Actions https://github.com/llnl/protlib-designer/actions
Projects https://github.com/llnl/protlib-designer/projects
Security and quality 0 https://github.com/llnl/protlib-designer/security
Insights https://github.com/llnl/protlib-designer/pulse
Code https://github.com/llnl/protlib-designer
Issues https://github.com/llnl/protlib-designer/issues
Pull requests https://github.com/llnl/protlib-designer/pulls
Actions https://github.com/llnl/protlib-designer/actions
Projects https://github.com/llnl/protlib-designer/projects
Security and quality https://github.com/llnl/protlib-designer/security
Insights https://github.com/llnl/protlib-designer/pulse
https://github.com/llnl/protlib-designer
Brancheshttps://github.com/llnl/protlib-designer/branches
Tagshttps://github.com/llnl/protlib-designer/tags
https://github.com/llnl/protlib-designer/branches
https://github.com/llnl/protlib-designer/tags
155 Commitshttps://github.com/llnl/protlib-designer/commits/main/
https://github.com/llnl/protlib-designer/commits/main/
.claude/commandshttps://github.com/llnl/protlib-designer/tree/main/.claude/commands
.claude/commandshttps://github.com/llnl/protlib-designer/tree/main/.claude/commands
.github/workflowshttps://github.com/llnl/protlib-designer/tree/main/.github/workflows
.github/workflowshttps://github.com/llnl/protlib-designer/tree/main/.github/workflows
dockerhttps://github.com/llnl/protlib-designer/tree/main/docker
dockerhttps://github.com/llnl/protlib-designer/tree/main/docker
example_datahttps://github.com/llnl/protlib-designer/tree/main/example_data
example_datahttps://github.com/llnl/protlib-designer/tree/main/example_data
imageshttps://github.com/llnl/protlib-designer/tree/main/images
imageshttps://github.com/llnl/protlib-designer/tree/main/images
protlib_designerhttps://github.com/llnl/protlib-designer/tree/main/protlib_designer
protlib_designerhttps://github.com/llnl/protlib-designer/tree/main/protlib_designer
scriptshttps://github.com/llnl/protlib-designer/tree/main/scripts
scriptshttps://github.com/llnl/protlib-designer/tree/main/scripts
testshttps://github.com/llnl/protlib-designer/tree/main/tests
testshttps://github.com/llnl/protlib-designer/tree/main/tests
.gitignorehttps://github.com/llnl/protlib-designer/blob/main/.gitignore
.gitignorehttps://github.com/llnl/protlib-designer/blob/main/.gitignore
CLAUDE.mdhttps://github.com/llnl/protlib-designer/blob/main/CLAUDE.md
CLAUDE.mdhttps://github.com/llnl/protlib-designer/blob/main/CLAUDE.md
CONTRIBUTING.mdhttps://github.com/llnl/protlib-designer/blob/main/CONTRIBUTING.md
CONTRIBUTING.mdhttps://github.com/llnl/protlib-designer/blob/main/CONTRIBUTING.md
LICENSEhttps://github.com/llnl/protlib-designer/blob/main/LICENSE
LICENSEhttps://github.com/llnl/protlib-designer/blob/main/LICENSE
NOTICEhttps://github.com/llnl/protlib-designer/blob/main/NOTICE
NOTICEhttps://github.com/llnl/protlib-designer/blob/main/NOTICE
README.mdhttps://github.com/llnl/protlib-designer/blob/main/README.md
README.mdhttps://github.com/llnl/protlib-designer/blob/main/README.md
pytest.inihttps://github.com/llnl/protlib-designer/blob/main/pytest.ini
pytest.inihttps://github.com/llnl/protlib-designer/blob/main/pytest.ini
setup.cfghttps://github.com/llnl/protlib-designer/blob/main/setup.cfg
setup.cfghttps://github.com/llnl/protlib-designer/blob/main/setup.cfg
setup.pyhttps://github.com/llnl/protlib-designer/blob/main/setup.py
setup.pyhttps://github.com/llnl/protlib-designer/blob/main/setup.py
READMEhttps://github.com/llnl/protlib-designer
Contributinghttps://github.com/llnl/protlib-designer
MIT licensehttps://github.com/llnl/protlib-designer
https://github.com/llnl/protlib-designer#----------------------
https://camo.githubusercontent.com/15e99b75bf27d82ce61696f6ed2bc677c3dbb56b0902a69b0afa0860c95e3aac/68747470733a2f2f696d672e736869656c64732e696f2f62616467652f5374617475732d4163746976652d677265656e2e737667
https://camo.githubusercontent.com/3fb80dc7fed4552eded42535210fa8a5a676f7ee2bcb704f30a3001fe53689bb/68747470733a2f2f696d672e736869656c64732e696f2f62616467652f507974686f6e2d332e31302d626c75652e737667
https://www.biorxiv.org/content/10.1101/2024.11.03.621763v1
https://github.com/LLNL/protlib-designer/actions/workflows/ci.yml/badge.svg
https://github.com/llnl/protlib-designer#introduction
Combinatorial Optimization of Antibody Libraries via Constrained Integer Programminghttps://www.biorxiv.org/content/10.1101/2024.11.03.621763v3
herehttps://landajuela.github.io/protlib_designer/
https://raw.githubusercontent.com/LLNL/protlib-designer/main/images/method_diagram.png
https://github.com/llnl/protlib-designer#getting-started
https://github.com/llnl/protlib-designer#installation
PyPIhttps://pypi.org/project/protlib-designer/
https://github.com/llnl/protlib-designer#run-the-code
https://github.com/llnl/protlib-designer#input-data
Antibody Library Design by Seeding Linear Programming with Inverse Folding and Protein Language Modelshttps://www.biorxiv.org/content/10.1101/2024.11.03.621763v1
ProtBerthttps://pubmed.ncbi.nlm.nih.gov/34232869/
AntiFoldhttps://arxiv.org/abs/2405.03370
https://github.com/llnl/protlib-designer#computing-input-data-using-protein-language-models
https://github.com/llnl/protlib-designer#computing-input-data-with-inverse-folding-models
Paperhttps://www.science.org/doi/abs/10.1126/science.add2187
ProteinMPNNhttps://github.com/dauparas/ProteinMPNN
https://github.com/llnl/protlib-designer#putting-it-all-together-protlib-designer-pipeline
https://github.com/llnl/protlib-designer#llm-reasoning-step
https://github.com/llnl/protlib-designer/blob/main/images/llm_agent_pipeline.png
https://github.com/llnl/protlib-designer#pipeline-with-llm-reasoning
https://github.com/llnl/protlib-designer#claude-code-skills
Claude Codehttps://docs.anthropic.com/en/docs/claude-code
https://github.com/llnl/protlib-designer#usage
Claude Codehttps://docs.anthropic.com/en/docs/claude-code
https://github.com/llnl/protlib-designer#contributing
CONTRIBUTING.mdhttps://github.com/llnl/protlib-designer/blob/main/CONTRIBUTING.md
https://github.com/llnl/protlib-designer#citation
https://github.com/llnl/protlib-designer#license
LICENSEhttps://github.com/llnl/protlib-designer/blob/main/LICENSE
RELEASEhttps://github.com/llnl/protlib-designer/blob/main/RELEASE
python https://github.com/topics/python
application https://github.com/topics/application
machine-learning https://github.com/topics/machine-learning
protein-design https://github.com/topics/protein-design
integer-programming https://github.com/topics/integer-programming
inverse-folding https://github.com/topics/inverse-folding
protein-language-model https://github.com/topics/protein-language-model
antibody-design https://github.com/topics/antibody-design
Readme https://github.com/llnl/protlib-designer#readme-ov-file
MIT license https://github.com/llnl/protlib-designer#MIT-1-ov-file
Contributing https://github.com/llnl/protlib-designer#contributing-ov-file
Please reload this pagehttps://github.com/llnl/protlib-designer
Activityhttps://github.com/llnl/protlib-designer/activity
Custom propertieshttps://github.com/llnl/protlib-designer/custom-properties
2 forkshttps://github.com/llnl/protlib-designer/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fllnl%2Fprotlib-designer&report=llnl+%28user%29
Releases 8https://github.com/llnl/protlib-designer/releases
v2.1.0: Release version 2.1.0 Latest May 29, 2025 https://github.com/llnl/protlib-designer/releases/tag/v2.1.0
+ 7 releaseshttps://github.com/llnl/protlib-designer/releases
Packages 0https://github.com/orgs/llnl/packages?repo_name=protlib-designer
Please reload this pagehttps://github.com/llnl/protlib-designer
Contributorshttps://github.com/llnl/protlib-designer/graphs/contributors
Please reload this pagehttps://github.com/llnl/protlib-designer
Python 99.2% https://github.com/llnl/protlib-designer/search?l=python
Dockerfile 0.8% https://github.com/llnl/protlib-designer/search?l=dockerfile
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.