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Title: GitHub - liyu95/DeepSimulator: The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing. · GitHub

Open Graph Title: GitHub - liyu95/DeepSimulator: The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

X Title: GitHub - liyu95/DeepSimulator: The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

Description: The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing. - liyu95/DeepSimulator

Open Graph Description: The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing. - liyu95/DeepSimulator

X Description: The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing. - liyu95/DeepSimulator

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READMEhttps://github.com/liyu95/DeepSimulator
https://github.com/lykaust15/DeepSimulator/blob/master/example/DS_logo.png
DeepSimulator1.5: a more powerful, quicker and lighter simulator for Nanopore sequencinghttps://academic.oup.com/bioinformatics/article/36/8/2578/5698265
[PDF]https://drive.google.com/file/d/1kwysNUmBCo6rM1LZKAd6qR2UWe9Lp2xp/view?usp=sharing
DeepSimulator: a deep simulator for Nanopore sequencinghttps://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty223/4962495
[PDF]https://drive.google.com/open?id=1TpxZR8lAbcABHBU-Pu8S8gfhvY6vnjn_
https://github.com/liyu95/DeepSimulator#overview
https://github.com/realbigws/DeepSimulator/blob/master/example/main_graph.png
https://github.com/liyu95/DeepSimulator#install
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https://www.anaconda.com/distribution/https://www.anaconda.com/distribution/
https://conda.io/miniconda.htmlhttps://conda.io/miniconda.html
https://github.com/liyu95/DeepSimulator#download-the-deepsimulator-package
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https://github.com/liyu95/DeepSimulator#examples
https://github.com/liyu95/DeepSimulator#the-main-parameters-of-deepsimulator
https://github.com/lykaust15/DeepSimulator/wiki/Parameters-of-DS1.5https://github.com/lykaust15/DeepSimulator/wiki/Parameters-of-DS1.5
https://github.com/liyu95/DeepSimulator#context-dependent-pore-model
https://github.com/liyu95/DeepSimulator#context-independent-kmer-pore-model-using-official-6mer
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https://github.com/liyu95/DeepSimulator#control-the-behavior-of-deepsimulator
Supplementary material of DeepSimulatorhttps://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/bioinformatics/34/17/10.1093_bioinformatics_bty223/2/bty223_supplemental_materials.pdf?Expires=2147483647&Signature=v5FSUbbU4eVfQdIo3H3Xrsq6CFVh8azonSxGg1WaAL35maQ0zqIPzdRPTTGUUhlzkLYBnU3Fi4G1DRcXc5YDD4Ea~8ic56zpjBNWQ4qqSZabjH9XwTFyPTbh6IKaHkULi9zKfSl02MxxXfqEJ0Xi72AKRv0Up4j~baWrfyUEKYtEVkzJbpbyAsnZhvPh2WSbFXyPhRhBn~fH9XfrEO9hbMQPSrT9di2Ho85ZBbZ2xS0P~J8sZyi91ulXQHfYSH5rbdaTNAAxRCVbLQUi3iKbJFE5Bl0de66w0mdjfgIZGqrBY9uPoXwW4MYf6H7OwmVXnDc-sjoe73UxO4xHRF17Ag__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA
https://github.com/liyu95/DeepSimulator#train-customized-model
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