René's URL Explorer Experiment

{"@context":"https://schema.org","@type":"QAPage","mainEntity":{"@type":"Question","name":"3D Raster - Issue or wrong definition?","text":"\u003cp dir=\"auto\"\u003eHi,\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eI believe one could generate a 3D Raster with the latest version? I tried with the following input, but I end up with an index error 'IndexError: index 0 is out of bounds for axis 0 with size 0'\u003cbr\u003e\nAny thoughts on a solution? Thanks in advance.\u003c/p\u003e\n\u003cdiv class=\"snippet-clipboard-content notranslate position-relative overflow-auto\" data-snippet-clipboard-copy-content=\"\u0026lt;material\u0026gt;\n    \u0026lt;fraction\u0026gt; 1 \u0026lt;/fraction\u0026gt;\n    \u0026lt;shape\u0026gt; ellipsoid \u0026lt;/shape\u0026gt;\n    \u0026lt;ratio_ab \u0026gt; 1.34 \u0026lt;/ratio_ab \u0026gt;\n    \u0026lt;ratio_ac \u0026gt; 2.00 \u0026lt;/ratio_ac \u0026gt;\n    \u0026lt;ratio_bc \u0026gt; 1.00 \u0026lt;/ratio_bc \u0026gt;\n    \u0026lt;size\u0026gt;\n        \u0026lt;dist_type\u0026gt; norm \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 10 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 3 \u0026lt;/scale\u0026gt;\n    \u0026lt;/size\u0026gt;\n    \u0026lt;position\u0026gt;  \u0026lt;!-- x --\u0026gt;\n        \u0026lt;dist_type\u0026gt; uniform \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 0.0 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 100.0 \u0026lt;/scale\u0026gt;\n    \u0026lt;/position\u0026gt;\n    \u0026lt;position\u0026gt; \u0026lt;!-- y --\u0026gt;\n        \u0026lt;dist_type\u0026gt; uniform \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 0.0 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 100 \u0026lt;/scale\u0026gt;\n    \u0026lt;/position\u0026gt;\n    \u0026lt;position\u0026gt; \u0026lt;!-- z --\u0026gt;\n        \u0026lt;dist_type\u0026gt; norm \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 50.0 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 5.0 \u0026lt;/scale\u0026gt;\n    \u0026lt;/position\u0026gt;\n    \u0026lt;name\u0026gt; Mat-A \u0026lt;/name\u0026gt;\n\u0026lt;/material\u0026gt;\n\n\u0026lt;material\u0026gt;\n    \u0026lt;fraction\u0026gt; 4 \u0026lt;/fraction\u0026gt;\n    \u0026lt;shape\u0026gt; ellipsoid \u0026lt;/shape\u0026gt;\n    \u0026lt;ratio_ab \u0026gt; 1.34 \u0026lt;/ratio_ab \u0026gt;\n    \u0026lt;ratio_ac \u0026gt; 2.00 \u0026lt;/ratio_ac \u0026gt;\n    \u0026lt;ratio_bc \u0026gt; 1.00 \u0026lt;/ratio_bc \u0026gt;\n    \u0026lt;size\u0026gt;\n        \u0026lt;dist_type\u0026gt; norm \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 15 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 3 \u0026lt;/scale\u0026gt;\n    \u0026lt;/size\u0026gt;\n    \u0026lt;name\u0026gt; Mat-B \u0026lt;/name\u0026gt;\n\u0026lt;/material\u0026gt;\n\n\u0026lt;domain\u0026gt;\n    \u0026lt;shape\u0026gt; cube \u0026lt;/shape\u0026gt;\n    \u0026lt;side_length\u0026gt; 100 \u0026lt;/side_length\u0026gt;\n    \u0026lt;corner\u0026gt; (0, 0, 0) \u0026lt;/corner\u0026gt;\n\u0026lt;/domain\u0026gt;\n\u0026lt;settings\u0026gt;\n    \u0026lt;directory\u0026gt; two_phase_3D \u0026lt;/directory\u0026gt;\n    \u0026lt;verbose\u0026gt; True \u0026lt;/verbose\u0026gt;\n    \u0026lt;filetypes\u0026gt;\n        \u0026lt;seeds\u0026gt; vtk \u0026lt;/seeds\u0026gt;\n        \u0026lt;poly\u0026gt; txt \u0026lt;/poly\u0026gt;\n\t\t\u0026lt;tri\u0026gt; txt \u0026lt;/tri\u0026gt;\n        \u0026lt;seeds_plot\u0026gt; png \u0026lt;/seeds_plot\u0026gt;\n        \u0026lt;poly_plot\u0026gt; png \u0026lt;/poly_plot\u0026gt;\n\t\t\u0026lt;tri_plot\u0026gt; png \u0026lt;/tri_plot\u0026gt;\n        \u0026lt;verify_plot\u0026gt; png \u0026lt;/verify_plot\u0026gt;\n    \u0026lt;/filetypes\u0026gt;\n    \u0026lt;mesher\u0026gt; raster \u0026lt;/mesher\u0026gt;\n    \u0026lt;seeds_kwargs\u0026gt;\n        \u0026lt;linewidths\u0026gt; 0.2 \u0026lt;/linewidths\u0026gt;\n    \u0026lt;/seeds_kwargs\u0026gt;\n    \u0026lt;poly_kwargs\u0026gt;\n        \u0026lt;linewidths\u0026gt; 0.2 \u0026lt;/linewidths\u0026gt;\n    \u0026lt;/poly_kwargs\u0026gt;\n\u0026lt;/settings\u0026gt;\"\u003e\u003cpre class=\"notranslate\"\u003e\u003ccode class=\"notranslate\"\u003e\u0026lt;material\u0026gt;\n    \u0026lt;fraction\u0026gt; 1 \u0026lt;/fraction\u0026gt;\n    \u0026lt;shape\u0026gt; ellipsoid \u0026lt;/shape\u0026gt;\n    \u0026lt;ratio_ab \u0026gt; 1.34 \u0026lt;/ratio_ab \u0026gt;\n    \u0026lt;ratio_ac \u0026gt; 2.00 \u0026lt;/ratio_ac \u0026gt;\n    \u0026lt;ratio_bc \u0026gt; 1.00 \u0026lt;/ratio_bc \u0026gt;\n    \u0026lt;size\u0026gt;\n        \u0026lt;dist_type\u0026gt; norm \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 10 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 3 \u0026lt;/scale\u0026gt;\n    \u0026lt;/size\u0026gt;\n    \u0026lt;position\u0026gt;  \u0026lt;!-- x --\u0026gt;\n        \u0026lt;dist_type\u0026gt; uniform \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 0.0 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 100.0 \u0026lt;/scale\u0026gt;\n    \u0026lt;/position\u0026gt;\n    \u0026lt;position\u0026gt; \u0026lt;!-- y --\u0026gt;\n        \u0026lt;dist_type\u0026gt; uniform \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 0.0 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 100 \u0026lt;/scale\u0026gt;\n    \u0026lt;/position\u0026gt;\n    \u0026lt;position\u0026gt; \u0026lt;!-- z --\u0026gt;\n        \u0026lt;dist_type\u0026gt; norm \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 50.0 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 5.0 \u0026lt;/scale\u0026gt;\n    \u0026lt;/position\u0026gt;\n    \u0026lt;name\u0026gt; Mat-A \u0026lt;/name\u0026gt;\n\u0026lt;/material\u0026gt;\n\n\u0026lt;material\u0026gt;\n    \u0026lt;fraction\u0026gt; 4 \u0026lt;/fraction\u0026gt;\n    \u0026lt;shape\u0026gt; ellipsoid \u0026lt;/shape\u0026gt;\n    \u0026lt;ratio_ab \u0026gt; 1.34 \u0026lt;/ratio_ab \u0026gt;\n    \u0026lt;ratio_ac \u0026gt; 2.00 \u0026lt;/ratio_ac \u0026gt;\n    \u0026lt;ratio_bc \u0026gt; 1.00 \u0026lt;/ratio_bc \u0026gt;\n    \u0026lt;size\u0026gt;\n        \u0026lt;dist_type\u0026gt; norm \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 15 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 3 \u0026lt;/scale\u0026gt;\n    \u0026lt;/size\u0026gt;\n    \u0026lt;name\u0026gt; Mat-B \u0026lt;/name\u0026gt;\n\u0026lt;/material\u0026gt;\n\n\u0026lt;domain\u0026gt;\n    \u0026lt;shape\u0026gt; cube \u0026lt;/shape\u0026gt;\n    \u0026lt;side_length\u0026gt; 100 \u0026lt;/side_length\u0026gt;\n    \u0026lt;corner\u0026gt; (0, 0, 0) \u0026lt;/corner\u0026gt;\n\u0026lt;/domain\u0026gt;\n\u0026lt;settings\u0026gt;\n    \u0026lt;directory\u0026gt; two_phase_3D \u0026lt;/directory\u0026gt;\n    \u0026lt;verbose\u0026gt; True \u0026lt;/verbose\u0026gt;\n    \u0026lt;filetypes\u0026gt;\n        \u0026lt;seeds\u0026gt; vtk \u0026lt;/seeds\u0026gt;\n        \u0026lt;poly\u0026gt; txt \u0026lt;/poly\u0026gt;\n\t\t\u0026lt;tri\u0026gt; txt \u0026lt;/tri\u0026gt;\n        \u0026lt;seeds_plot\u0026gt; png \u0026lt;/seeds_plot\u0026gt;\n        \u0026lt;poly_plot\u0026gt; png \u0026lt;/poly_plot\u0026gt;\n\t\t\u0026lt;tri_plot\u0026gt; png \u0026lt;/tri_plot\u0026gt;\n        \u0026lt;verify_plot\u0026gt; png \u0026lt;/verify_plot\u0026gt;\n    \u0026lt;/filetypes\u0026gt;\n    \u0026lt;mesher\u0026gt; raster \u0026lt;/mesher\u0026gt;\n    \u0026lt;seeds_kwargs\u0026gt;\n        \u0026lt;linewidths\u0026gt; 0.2 \u0026lt;/linewidths\u0026gt;\n    \u0026lt;/seeds_kwargs\u0026gt;\n    \u0026lt;poly_kwargs\u0026gt;\n        \u0026lt;linewidths\u0026gt; 0.2 \u0026lt;/linewidths\u0026gt;\n    \u0026lt;/poly_kwargs\u0026gt;\n\u0026lt;/settings\u0026gt;\n\u003c/code\u003e\u003c/pre\u003e\u003c/div\u003e","upvoteCount":1,"answerCount":3,"acceptedAnswer":{"@type":"Answer","text":"\u003cp dir=\"auto\"\u003eHi \u003ca class=\"user-mention notranslate\" data-hovercard-type=\"user\" data-hovercard-url=\"/users/hem-28/hovercard\" data-octo-click=\"hovercard-link-click\" data-octo-dimensions=\"link_type:self\" href=\"https://github.com/hem-28\"\u003e@hem-28\u003c/a\u003e, I found the issue. The raster mesh generator uses mesh_size to determine the edge length for each pixel/voxel. The default value is infinity, which produces nonsense results internally. When I set mesh_size to 5, I get this result:\u003c/p\u003e\n\u003cp dir=\"auto\"\u003e\u003ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https://user-images.githubusercontent.com/41959581/173716304-ea7a1d60-0fc8-44d4-9c36-aabdc14c20f7.png\"\u003e\u003cimg src=\"https://user-images.githubusercontent.com/41959581/173716304-ea7a1d60-0fc8-44d4-9c36-aabdc14c20f7.png\" alt=\"rastermesh\" style=\"max-width: 100%;\"\u003e\u003c/a\u003e\u003c/p\u003e\n\u003cp dir=\"auto\"\u003eThe input file should be as below, with the mesh_size setting indicated. You can set mesh_size to a value you prefer. I considered setting it to 1, but that is too many voxels for my computer. Let me know if you need any further assistance.\u003c/p\u003e\n\u003cdiv class=\"highlight highlight-text-xml notranslate position-relative overflow-auto\" dir=\"auto\" data-snippet-clipboard-copy-content=\"\u0026lt;?xml version=\u0026quot;1.0\u0026quot; encoding=\u0026quot;UTF-8\u0026quot;?\u0026gt;\n\u0026lt;input\u0026gt;\n\u0026lt;material\u0026gt;\n    \u0026lt;fraction\u0026gt; 1 \u0026lt;/fraction\u0026gt;\n    \u0026lt;shape\u0026gt; ellipsoid \u0026lt;/shape\u0026gt;\n    \u0026lt;ratio_ab \u0026gt; 1.34 \u0026lt;/ratio_ab \u0026gt;\n    \u0026lt;ratio_ac \u0026gt; 2.00 \u0026lt;/ratio_ac \u0026gt;\n    \u0026lt;ratio_bc \u0026gt; 1.00 \u0026lt;/ratio_bc \u0026gt;\n    \u0026lt;size\u0026gt;\n        \u0026lt;dist_type\u0026gt; norm \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 10 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 3 \u0026lt;/scale\u0026gt;\n    \u0026lt;/size\u0026gt;\n    \u0026lt;position\u0026gt;  \u0026lt;!-- x --\u0026gt;\n        \u0026lt;dist_type\u0026gt; uniform \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 0.0 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 100.0 \u0026lt;/scale\u0026gt;\n    \u0026lt;/position\u0026gt;\n    \u0026lt;position\u0026gt; \u0026lt;!-- y --\u0026gt;\n        \u0026lt;dist_type\u0026gt; uniform \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 0.0 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 100 \u0026lt;/scale\u0026gt;\n    \u0026lt;/position\u0026gt;\n    \u0026lt;position\u0026gt; \u0026lt;!-- z --\u0026gt;\n        \u0026lt;dist_type\u0026gt; norm \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 50.0 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 5.0 \u0026lt;/scale\u0026gt;\n    \u0026lt;/position\u0026gt;\n    \u0026lt;name\u0026gt; Mat-A \u0026lt;/name\u0026gt;\n\u0026lt;/material\u0026gt;\n\n\u0026lt;material\u0026gt;\n    \u0026lt;fraction\u0026gt; 4 \u0026lt;/fraction\u0026gt;\n    \u0026lt;shape\u0026gt; ellipsoid \u0026lt;/shape\u0026gt;\n    \u0026lt;ratio_ab \u0026gt; 1.34 \u0026lt;/ratio_ab \u0026gt;\n    \u0026lt;ratio_ac \u0026gt; 2.00 \u0026lt;/ratio_ac \u0026gt;\n    \u0026lt;ratio_bc \u0026gt; 1.00 \u0026lt;/ratio_bc \u0026gt;\n    \u0026lt;size\u0026gt;\n        \u0026lt;dist_type\u0026gt; norm \u0026lt;/dist_type\u0026gt;\n        \u0026lt;loc\u0026gt; 15 \u0026lt;/loc\u0026gt;\n        \u0026lt;scale\u0026gt; 3 \u0026lt;/scale\u0026gt;\n    \u0026lt;/size\u0026gt;\n    \u0026lt;name\u0026gt; Mat-B \u0026lt;/name\u0026gt;\n\u0026lt;/material\u0026gt;\n\n\u0026lt;domain\u0026gt;\n    \u0026lt;shape\u0026gt; cube \u0026lt;/shape\u0026gt;\n    \u0026lt;side_length\u0026gt; 100 \u0026lt;/side_length\u0026gt;\n    \u0026lt;corner\u0026gt; (0, 0, 0) \u0026lt;/corner\u0026gt;\n\u0026lt;/domain\u0026gt;\n\u0026lt;settings\u0026gt;\n    \u0026lt;directory\u0026gt; two_phase_3D \u0026lt;/directory\u0026gt;\n    \u0026lt;verbose\u0026gt; True \u0026lt;/verbose\u0026gt;\n    \u0026lt;filetypes\u0026gt;\n        \u0026lt;seeds\u0026gt; vtk \u0026lt;/seeds\u0026gt;\n        \u0026lt;poly\u0026gt; txt \u0026lt;/poly\u0026gt;\n\t\t\u0026lt;tri\u0026gt; txt \u0026lt;/tri\u0026gt;\n        \u0026lt;seeds_plot\u0026gt; png \u0026lt;/seeds_plot\u0026gt;\n        \u0026lt;poly_plot\u0026gt; png \u0026lt;/poly_plot\u0026gt;\n\t\t\u0026lt;tri_plot\u0026gt; png \u0026lt;/tri_plot\u0026gt;\n        \u0026lt;verify_plot\u0026gt; png \u0026lt;/verify_plot\u0026gt;\n    \u0026lt;/filetypes\u0026gt;\n    \u0026lt;mesher\u0026gt; raster \u0026lt;/mesher\u0026gt;\n    \u0026lt;mesh_size\u0026gt; 5 \u0026lt;/mesh_size\u0026gt;  \u0026lt;!-- this value sets the edge length of each voxel --\u0026gt;\n    \u0026lt;seeds_kwargs\u0026gt;\n        \u0026lt;linewidths\u0026gt; 0.2 \u0026lt;/linewidths\u0026gt;\n    \u0026lt;/seeds_kwargs\u0026gt;\n    \u0026lt;poly_kwargs\u0026gt;\n        \u0026lt;linewidths\u0026gt; 0.2 \u0026lt;/linewidths\u0026gt;\n    \u0026lt;/poly_kwargs\u0026gt;\n\u0026lt;/settings\u0026gt;\n\u0026lt;/input\u0026gt;\"\u003e\u003cpre class=\"notranslate\"\u003e\u0026lt;?\u003cspan class=\"pl-ent\"\u003exml\u003c/span\u003e\u003cspan class=\"pl-e\"\u003e version\u003c/span\u003e=\u003cspan class=\"pl-s\"\u003e\u003cspan class=\"pl-pds\"\u003e\"\u003c/span\u003e1.0\u003cspan class=\"pl-pds\"\u003e\"\u003c/span\u003e\u003c/span\u003e\u003cspan class=\"pl-e\"\u003e encoding\u003c/span\u003e=\u003cspan class=\"pl-s\"\u003e\u003cspan class=\"pl-pds\"\u003e\"\u003c/span\u003eUTF-8\u003cspan class=\"pl-pds\"\u003e\"\u003c/span\u003e\u003c/span\u003e?\u0026gt;\n\u0026lt;\u003cspan class=\"pl-ent\"\u003einput\u003c/span\u003e\u0026gt;\n\u0026lt;\u003cspan class=\"pl-ent\"\u003ematerial\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003efraction\u003c/span\u003e\u0026gt; 1 \u0026lt;/\u003cspan class=\"pl-ent\"\u003efraction\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eshape\u003c/span\u003e\u0026gt; ellipsoid \u0026lt;/\u003cspan class=\"pl-ent\"\u003eshape\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eratio_ab\u003c/span\u003e \u0026gt; 1.34 \u0026lt;/\u003cspan class=\"pl-ent\"\u003eratio_ab\u003c/span\u003e \u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eratio_ac\u003c/span\u003e \u0026gt; 2.00 \u0026lt;/\u003cspan class=\"pl-ent\"\u003eratio_ac\u003c/span\u003e \u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eratio_bc\u003c/span\u003e \u0026gt; 1.00 \u0026lt;/\u003cspan class=\"pl-ent\"\u003eratio_bc\u003c/span\u003e \u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003esize\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003edist_type\u003c/span\u003e\u0026gt; norm \u0026lt;/\u003cspan class=\"pl-ent\"\u003edist_type\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003eloc\u003c/span\u003e\u0026gt; 10 \u0026lt;/\u003cspan class=\"pl-ent\"\u003eloc\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003escale\u003c/span\u003e\u0026gt; 3 \u0026lt;/\u003cspan class=\"pl-ent\"\u003escale\u003c/span\u003e\u0026gt;\n    \u0026lt;/\u003cspan class=\"pl-ent\"\u003esize\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eposition\u003c/span\u003e\u0026gt;  \u003cspan class=\"pl-c\"\u003e\u003cspan class=\"pl-c\"\u003e\u0026lt;!--\u003c/span\u003e x \u003cspan class=\"pl-c\"\u003e--\u0026gt;\u003c/span\u003e\u003c/span\u003e\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003edist_type\u003c/span\u003e\u0026gt; uniform \u0026lt;/\u003cspan class=\"pl-ent\"\u003edist_type\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003eloc\u003c/span\u003e\u0026gt; 0.0 \u0026lt;/\u003cspan class=\"pl-ent\"\u003eloc\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003escale\u003c/span\u003e\u0026gt; 100.0 \u0026lt;/\u003cspan class=\"pl-ent\"\u003escale\u003c/span\u003e\u0026gt;\n    \u0026lt;/\u003cspan class=\"pl-ent\"\u003eposition\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eposition\u003c/span\u003e\u0026gt; \u003cspan class=\"pl-c\"\u003e\u003cspan class=\"pl-c\"\u003e\u0026lt;!--\u003c/span\u003e y \u003cspan class=\"pl-c\"\u003e--\u0026gt;\u003c/span\u003e\u003c/span\u003e\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003edist_type\u003c/span\u003e\u0026gt; uniform \u0026lt;/\u003cspan class=\"pl-ent\"\u003edist_type\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003eloc\u003c/span\u003e\u0026gt; 0.0 \u0026lt;/\u003cspan class=\"pl-ent\"\u003eloc\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003escale\u003c/span\u003e\u0026gt; 100 \u0026lt;/\u003cspan class=\"pl-ent\"\u003escale\u003c/span\u003e\u0026gt;\n    \u0026lt;/\u003cspan class=\"pl-ent\"\u003eposition\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eposition\u003c/span\u003e\u0026gt; \u003cspan class=\"pl-c\"\u003e\u003cspan class=\"pl-c\"\u003e\u0026lt;!--\u003c/span\u003e z \u003cspan class=\"pl-c\"\u003e--\u0026gt;\u003c/span\u003e\u003c/span\u003e\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003edist_type\u003c/span\u003e\u0026gt; norm \u0026lt;/\u003cspan class=\"pl-ent\"\u003edist_type\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003eloc\u003c/span\u003e\u0026gt; 50.0 \u0026lt;/\u003cspan class=\"pl-ent\"\u003eloc\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003escale\u003c/span\u003e\u0026gt; 5.0 \u0026lt;/\u003cspan class=\"pl-ent\"\u003escale\u003c/span\u003e\u0026gt;\n    \u0026lt;/\u003cspan class=\"pl-ent\"\u003eposition\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003ename\u003c/span\u003e\u0026gt; Mat-A \u0026lt;/\u003cspan class=\"pl-ent\"\u003ename\u003c/span\u003e\u0026gt;\n\u0026lt;/\u003cspan class=\"pl-ent\"\u003ematerial\u003c/span\u003e\u0026gt;\n\n\u0026lt;\u003cspan class=\"pl-ent\"\u003ematerial\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003efraction\u003c/span\u003e\u0026gt; 4 \u0026lt;/\u003cspan class=\"pl-ent\"\u003efraction\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eshape\u003c/span\u003e\u0026gt; ellipsoid \u0026lt;/\u003cspan class=\"pl-ent\"\u003eshape\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eratio_ab\u003c/span\u003e \u0026gt; 1.34 \u0026lt;/\u003cspan class=\"pl-ent\"\u003eratio_ab\u003c/span\u003e \u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eratio_ac\u003c/span\u003e \u0026gt; 2.00 \u0026lt;/\u003cspan class=\"pl-ent\"\u003eratio_ac\u003c/span\u003e \u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eratio_bc\u003c/span\u003e \u0026gt; 1.00 \u0026lt;/\u003cspan class=\"pl-ent\"\u003eratio_bc\u003c/span\u003e \u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003esize\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003edist_type\u003c/span\u003e\u0026gt; norm \u0026lt;/\u003cspan class=\"pl-ent\"\u003edist_type\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003eloc\u003c/span\u003e\u0026gt; 15 \u0026lt;/\u003cspan class=\"pl-ent\"\u003eloc\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003escale\u003c/span\u003e\u0026gt; 3 \u0026lt;/\u003cspan class=\"pl-ent\"\u003escale\u003c/span\u003e\u0026gt;\n    \u0026lt;/\u003cspan class=\"pl-ent\"\u003esize\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003ename\u003c/span\u003e\u0026gt; Mat-B \u0026lt;/\u003cspan class=\"pl-ent\"\u003ename\u003c/span\u003e\u0026gt;\n\u0026lt;/\u003cspan class=\"pl-ent\"\u003ematerial\u003c/span\u003e\u0026gt;\n\n\u0026lt;\u003cspan class=\"pl-ent\"\u003edomain\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eshape\u003c/span\u003e\u0026gt; cube \u0026lt;/\u003cspan class=\"pl-ent\"\u003eshape\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eside_length\u003c/span\u003e\u0026gt; 100 \u0026lt;/\u003cspan class=\"pl-ent\"\u003eside_length\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003ecorner\u003c/span\u003e\u0026gt; (0, 0, 0) \u0026lt;/\u003cspan class=\"pl-ent\"\u003ecorner\u003c/span\u003e\u0026gt;\n\u0026lt;/\u003cspan class=\"pl-ent\"\u003edomain\u003c/span\u003e\u0026gt;\n\u0026lt;\u003cspan class=\"pl-ent\"\u003esettings\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003edirectory\u003c/span\u003e\u0026gt; two_phase_3D \u0026lt;/\u003cspan class=\"pl-ent\"\u003edirectory\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003everbose\u003c/span\u003e\u0026gt; True \u0026lt;/\u003cspan class=\"pl-ent\"\u003everbose\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003efiletypes\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003eseeds\u003c/span\u003e\u0026gt; vtk \u0026lt;/\u003cspan class=\"pl-ent\"\u003eseeds\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003epoly\u003c/span\u003e\u0026gt; txt \u0026lt;/\u003cspan class=\"pl-ent\"\u003epoly\u003c/span\u003e\u0026gt;\n\t\t\u0026lt;\u003cspan class=\"pl-ent\"\u003etri\u003c/span\u003e\u0026gt; txt \u0026lt;/\u003cspan class=\"pl-ent\"\u003etri\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003eseeds_plot\u003c/span\u003e\u0026gt; png \u0026lt;/\u003cspan class=\"pl-ent\"\u003eseeds_plot\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003epoly_plot\u003c/span\u003e\u0026gt; png \u0026lt;/\u003cspan class=\"pl-ent\"\u003epoly_plot\u003c/span\u003e\u0026gt;\n\t\t\u0026lt;\u003cspan class=\"pl-ent\"\u003etri_plot\u003c/span\u003e\u0026gt; png \u0026lt;/\u003cspan class=\"pl-ent\"\u003etri_plot\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003everify_plot\u003c/span\u003e\u0026gt; png \u0026lt;/\u003cspan class=\"pl-ent\"\u003everify_plot\u003c/span\u003e\u0026gt;\n    \u0026lt;/\u003cspan class=\"pl-ent\"\u003efiletypes\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003emesher\u003c/span\u003e\u0026gt; raster \u0026lt;/\u003cspan class=\"pl-ent\"\u003emesher\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003emesh_size\u003c/span\u003e\u0026gt; 5 \u0026lt;/\u003cspan class=\"pl-ent\"\u003emesh_size\u003c/span\u003e\u0026gt;  \u003cspan class=\"pl-c\"\u003e\u003cspan class=\"pl-c\"\u003e\u0026lt;!--\u003c/span\u003e this value sets the edge length of each voxel \u003cspan class=\"pl-c\"\u003e--\u0026gt;\u003c/span\u003e\u003c/span\u003e\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003eseeds_kwargs\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003elinewidths\u003c/span\u003e\u0026gt; 0.2 \u0026lt;/\u003cspan class=\"pl-ent\"\u003elinewidths\u003c/span\u003e\u0026gt;\n    \u0026lt;/\u003cspan class=\"pl-ent\"\u003eseeds_kwargs\u003c/span\u003e\u0026gt;\n    \u0026lt;\u003cspan class=\"pl-ent\"\u003epoly_kwargs\u003c/span\u003e\u0026gt;\n        \u0026lt;\u003cspan class=\"pl-ent\"\u003elinewidths\u003c/span\u003e\u0026gt; 0.2 \u0026lt;/\u003cspan class=\"pl-ent\"\u003elinewidths\u003c/span\u003e\u0026gt;\n    \u0026lt;/\u003cspan class=\"pl-ent\"\u003epoly_kwargs\u003c/span\u003e\u0026gt;\n\u0026lt;/\u003cspan class=\"pl-ent\"\u003esettings\u003c/span\u003e\u0026gt;\n\u0026lt;/\u003cspan class=\"pl-ent\"\u003einput\u003c/span\u003e\u0026gt;\u003c/pre\u003e\u003c/div\u003e","upvoteCount":1,"url":"https://github.com/kip-hart/MicroStructPy/discussions/69#discussioncomment-2951771"}}}