René's URL Explorer Experiment


Title: GitHub - khjia/SCORPIOS: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event. · GitHub

Open Graph Title: GitHub - khjia/SCORPIOS: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.

X Title: GitHub - khjia/SCORPIOS: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.

Description: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event. - GitHub - khjia/SCORPIOS: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.

Open Graph Description: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event. - khjia/SCORPIOS

X Description: SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event. - khjia/SCORPIOS

Mail addresses
elise.parey@bio.ens.psl.eu

Opengraph URL: https://github.com/khjia/SCORPIOS

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:eed95bcf-8be1-7724-8680-7eb3d40b88e1
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idC844:1DF241:62E8883:831B644:6A5DD4FC
html-safe-noncef7b183f5128159f8dbaac1a772b1119c8fa7dcfd46d75fb34046deef8d890e21
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJDODQ0OjFERjI0MTo2MkU4ODgzOjgzMUI2NDQ6NkE1REQ0RkMiLCJ2aXNpdG9yX2lkIjoiMzkyMTE5MjM2NTc4MTI3NTkwMCIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac6cde5e15c7d607286360bf06cc856beb5eb7f99c948225fdb32590806d8b66a4
hovercard-subject-tagrepository:319584188
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/khjia/SCORPIOS
twitter:imagehttps://opengraph.githubassets.com/65fbea33859a47db6ad6a722f9ce856973ee6157301346defbf9e592c2497d6d/khjia/SCORPIOS
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/65fbea33859a47db6ad6a722f9ce856973ee6157301346defbf9e592c2497d6d/khjia/SCORPIOS
og:image:altSCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event. - khjia/SCORPIOS
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None5290d7e14309ad1e76106a9c4237bd1041517e83ea182c8ab756752cb0c6940b
turbo-cache-controlno-cache
go-importgithub.com/khjia/SCORPIOS git https://github.com/khjia/SCORPIOS.git
octolytics-dimension-user_id33917223
octolytics-dimension-user_loginkhjia
octolytics-dimension-repository_id319584188
octolytics-dimension-repository_nwokhjia/SCORPIOS
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id226113148
octolytics-dimension-repository_parent_nwoDyogenIBENS/SCORPIOS
octolytics-dimension-repository_network_root_id226113148
octolytics-dimension-repository_network_root_nwoDyogenIBENS/SCORPIOS
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release9c975978430e9ad293956f2bbdaf153b1bd84a99
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/khjia/SCORPIOS#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fkhjia%2FSCORPIOS
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/open-source/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/open-source/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/enterprise/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fkhjia%2FSCORPIOS
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=khjia%2FSCORPIOS
Reloadhttps://github.com/khjia/SCORPIOS
Reloadhttps://github.com/khjia/SCORPIOS
Reloadhttps://github.com/khjia/SCORPIOS
khjia https://github.com/khjia
SCORPIOShttps://github.com/khjia/SCORPIOS
DyogenIBENS/SCORPIOShttps://github.com/DyogenIBENS/SCORPIOS
Notifications https://github.com/login?return_to=%2Fkhjia%2FSCORPIOS
Fork 0 https://github.com/login?return_to=%2Fkhjia%2FSCORPIOS
Star 1 https://github.com/login?return_to=%2Fkhjia%2FSCORPIOS
Code https://github.com/khjia/SCORPIOS
Pull requests 0 https://github.com/khjia/SCORPIOS/pulls
Actions https://github.com/khjia/SCORPIOS/actions
Projects https://github.com/khjia/SCORPIOS/projects
Security and quality 0 https://github.com/khjia/SCORPIOS/security
Insights https://github.com/khjia/SCORPIOS/pulse
Code https://github.com/khjia/SCORPIOS
Pull requests https://github.com/khjia/SCORPIOS/pulls
Actions https://github.com/khjia/SCORPIOS/actions
Projects https://github.com/khjia/SCORPIOS/projects
Security and quality https://github.com/khjia/SCORPIOS/security
Insights https://github.com/khjia/SCORPIOS/pulse
https://github.com/khjia/SCORPIOS
Brancheshttps://github.com/khjia/SCORPIOS/branches
Tagshttps://github.com/khjia/SCORPIOS/tags
https://github.com/khjia/SCORPIOS/branches
https://github.com/khjia/SCORPIOS/tags
292 Commitshttps://github.com/khjia/SCORPIOS/commits/master/
https://github.com/khjia/SCORPIOS/commits/master/
data/examplehttps://github.com/khjia/SCORPIOS/tree/master/data/example
data/examplehttps://github.com/khjia/SCORPIOS/tree/master/data/example
dochttps://github.com/khjia/SCORPIOS/tree/master/doc
dochttps://github.com/khjia/SCORPIOS/tree/master/doc
envshttps://github.com/khjia/SCORPIOS/tree/master/envs
envshttps://github.com/khjia/SCORPIOS/tree/master/envs
scriptshttps://github.com/khjia/SCORPIOS/tree/master/scripts
scriptshttps://github.com/khjia/SCORPIOS/tree/master/scripts
.gitignorehttps://github.com/khjia/SCORPIOS/blob/master/.gitignore
.gitignorehttps://github.com/khjia/SCORPIOS/blob/master/.gitignore
.pylintrchttps://github.com/khjia/SCORPIOS/blob/master/.pylintrc
.pylintrchttps://github.com/khjia/SCORPIOS/blob/master/.pylintrc
.readthedocs.yamlhttps://github.com/khjia/SCORPIOS/blob/master/.readthedocs.yaml
.readthedocs.yamlhttps://github.com/khjia/SCORPIOS/blob/master/.readthedocs.yaml
CHANGELOG.rsthttps://github.com/khjia/SCORPIOS/blob/master/CHANGELOG.rst
CHANGELOG.rsthttps://github.com/khjia/SCORPIOS/blob/master/CHANGELOG.rst
LICENSE.txthttps://github.com/khjia/SCORPIOS/blob/master/LICENSE.txt
LICENSE.txthttps://github.com/khjia/SCORPIOS/blob/master/LICENSE.txt
README.mdhttps://github.com/khjia/SCORPIOS/blob/master/README.md
README.mdhttps://github.com/khjia/SCORPIOS/blob/master/README.md
Snakefilehttps://github.com/khjia/SCORPIOS/blob/master/Snakefile
Snakefilehttps://github.com/khjia/SCORPIOS/blob/master/Snakefile
config_example.yamlhttps://github.com/khjia/SCORPIOS/blob/master/config_example.yaml
config_example.yamlhttps://github.com/khjia/SCORPIOS/blob/master/config_example.yaml
iterate_scorpios.shhttps://github.com/khjia/SCORPIOS/blob/master/iterate_scorpios.sh
iterate_scorpios.shhttps://github.com/khjia/SCORPIOS/blob/master/iterate_scorpios.sh
module_build_trees.smkhttps://github.com/khjia/SCORPIOS/blob/master/module_build_trees.smk
module_build_trees.smkhttps://github.com/khjia/SCORPIOS/blob/master/module_build_trees.smk
module_correct_trees.smkhttps://github.com/khjia/SCORPIOS/blob/master/module_correct_trees.smk
module_correct_trees.smkhttps://github.com/khjia/SCORPIOS/blob/master/module_correct_trees.smk
module_graphs_orthogroups.smkhttps://github.com/khjia/SCORPIOS/blob/master/module_graphs_orthogroups.smk
module_graphs_orthogroups.smkhttps://github.com/khjia/SCORPIOS/blob/master/module_graphs_orthogroups.smk
module_orthology_table.smkhttps://github.com/khjia/SCORPIOS/blob/master/module_orthology_table.smk
module_orthology_table.smkhttps://github.com/khjia/SCORPIOS/blob/master/module_orthology_table.smk
module_synteny_ortho_para.smkhttps://github.com/khjia/SCORPIOS/blob/master/module_synteny_ortho_para.smk
module_synteny_ortho_para.smkhttps://github.com/khjia/SCORPIOS/blob/master/module_synteny_ortho_para.smk
READMEhttps://github.com/khjia/SCORPIOS
GPL-3.0 licensehttps://github.com/khjia/SCORPIOS
https://github.com/khjia/SCORPIOS#scorpios---synteny-guided-correction-of-paralogies-and-orthologies
https://doi.org/10.5281/zenodo.3727519
https://www.gnu.org/licenses/gpl-3.0
https://snakemake.bitbucket.io
https://scorpios.readthedocs.io/en/latest/?badge=latest
Snakemakehttps://snakemake.readthedocs.io/en/stable/
SCORPiOs documentationhttps://scorpios.readthedocs.io/en/latest/
https://github.com/DyogenIBENS/SCORPIOS/blob/master/doc/img/scorpios_illustrated.png
https://doi.org/10.1093/molbev/msaa149https://doi.org/10.1093/molbev/msaa149
https://github.com/khjia/SCORPIOS#quick-start
SCORPiOs documentationhttps://scorpios.readthedocs.io/en/latest/
https://github.com/khjia/SCORPIOS#table-of-content
Installationhttps://github.com/khjia/SCORPIOS#installation
Installing condahttps://github.com/khjia/SCORPIOS#installing-conda
Installing SCORPiOshttps://github.com/khjia/SCORPIOS#installing-scorpios
Usagehttps://github.com/khjia/SCORPIOS#usage
Setting up your working environment for SCORPiOshttps://github.com/khjia/SCORPIOS#setting-up-your-working-environment-for-scorpios
Running SCORPiOs on example datahttps://github.com/khjia/SCORPIOS#running-scorpios-on-example-data
Example 1: Simple SCORPiOs runhttps://github.com/khjia/SCORPIOS#example-1-simple-scorpios-run
Example 2: Iterative SCORPiOs runhttps://github.com/khjia/SCORPIOS#example-2-iterative-scorpios-run
Running SCORPiOS on your datahttps://github.com/khjia/SCORPIOS#running-scorpios-on-your-data
Preparing your configuration filehttps://github.com/khjia/SCORPIOS#preparing-your-configuration-file
Running SCORPiOshttps://github.com/khjia/SCORPIOS#running-scorpios
Authorshttps://github.com/khjia/SCORPIOS#authors
Licensehttps://github.com/khjia/SCORPIOS#license
Referenceshttps://github.com/khjia/SCORPIOS#references
https://github.com/khjia/SCORPIOS#installation
https://github.com/khjia/SCORPIOS#installing-conda
herehttps://docs.conda.io/en/latest/miniconda.html
https://github.com/khjia/SCORPIOS#installing-scorpios
Mambahttps://github.com/mamba-org/mamba
https://github.com/khjia/SCORPIOS#usage
https://github.com/khjia/SCORPIOS#setting-up-your-working-environment-for-scorpios
https://github.com/khjia/SCORPIOS#running-scorpios-on-example-data
https://github.com/khjia/SCORPIOS#example-1-simple-scorpios-run
config_example.yamlhttps://github.com/khjia/SCORPIOS/blob/master/config_example.yaml
data/example/https://github.com/khjia/SCORPIOS/blob/master/data/example
Snakemake documentationhttps://snakemake.readthedocs.io/en/stable/
https://github.com/khjia/SCORPIOS#example-2-iterative-scorpios-run
https://github.com/khjia/SCORPIOS#running-scorpios-on-your-data
https://github.com/khjia/SCORPIOS#preparing-your-configuration-file
config_example.yamlhttps://github.com/khjia/SCORPIOS/blob/master/config_example.yaml
https://github.com/khjia/SCORPIOS#running-scorpios
https://github.com/khjia/SCORPIOS#authors
https://github.com/khjia/SCORPIOS#license
LICENSE GPLv3https://github.com/khjia/SCORPIOS/blob/master/LICENSE.txt
https://github.com/khjia/SCORPIOS#references
ProfileNJhttps://github.com/maclandrol/profileNJ
RAxMLhttps://github.com/stamatak/standard-RAxML
PhyMLhttp://www.atgc-montpellier.fr/phyml/
TreeBeSThttps://github.com/Ensembl/treebest
CONSELhttps://github.com/shimo-lab/consel
Readme https://github.com/khjia/SCORPIOS#readme-ov-file
GPL-3.0 license https://github.com/khjia/SCORPIOS#GPL-3.0-1-ov-file
Please reload this pagehttps://github.com/khjia/SCORPIOS
Activityhttps://github.com/khjia/SCORPIOS/activity
0 forkshttps://github.com/khjia/SCORPIOS/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fkhjia%2FSCORPIOS&report=khjia+%28user%29
Releaseshttps://github.com/khjia/SCORPIOS/releases
4 tags https://github.com/khjia/SCORPIOS/tags
Packages 0https://github.com/users/khjia/packages?repo_name=SCORPIOS
Please reload this pagehttps://github.com/khjia/SCORPIOS
Contributorshttps://github.com/khjia/SCORPIOS/graphs/contributors
Please reload this pagehttps://github.com/khjia/SCORPIOS
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.