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Title: Commits · java-learners/biojava · GitHub

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Description: :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. - Commits · java-learners/biojava

Open Graph Description: :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. - Commits · java-learners/biojava

X Description: :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. - Commits · java-learners/biojava

Opengraph URL: https://github.com/java-learners/biojava

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Ugly, basic MMTF support in AtomCachehttps://github.com/java-learners/biojava/commit/3f94fe54a4e584e68840e8d3e2fbfee30e89d59e
https://github.com/sbliven
sblivenhttps://github.com/java-learners/biojava/commits?author=sbliven
3f94fe5https://github.com/java-learners/biojava/commit/3f94fe54a4e584e68840e8d3e2fbfee30e89d59e
https://github.com/java-learners/biojava/tree/3f94fe54a4e584e68840e8d3e2fbfee30e89d59e
[maven-release-plugin] prepare for next development iterationhttps://github.com/java-learners/biojava/commit/fc5d55720bd10b98d6c36f4e92c819a95c64245e
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
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https://github.com/java-learners/biojava/tree/fc5d55720bd10b98d6c36f4e92c819a95c64245e
[maven-release-plugin] prepare release biojava-5.0.0-alpha2https://github.com/java-learners/biojava/commit/38dcd66dad09d8c991221e369b52e8f2d5a795c8
https://github.com/abradle
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38dcd66https://github.com/java-learners/biojava/commit/38dcd66dad09d8c991221e369b52e8f2d5a795c8
https://github.com/java-learners/biojava/tree/38dcd66dad09d8c991221e369b52e8f2d5a795c8
Update not to do doc lintinghttps://github.com/java-learners/biojava/commit/9c0b57e527d09698cebb4049950231440dc95f84
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
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https://github.com/java-learners/biojava/tree/9c0b57e527d09698cebb4049950231440dc95f84
Updated pom to build off alpha2https://github.com/java-learners/biojava/commit/a2b4586b3538660052eb71d05a9f097fe14f8433
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
a2b4586https://github.com/java-learners/biojava/commit/a2b4586b3538660052eb71d05a9f097fe14f8433
https://github.com/java-learners/biojava/tree/a2b4586b3538660052eb71d05a9f097fe14f8433
Update the decoder to work with the new interfacehttps://github.com/java-learners/biojava/commit/26ff03de564d1dcc88c1edf0ea6cfd4d65b85306
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
26ff03dhttps://github.com/java-learners/biojava/commit/26ff03de564d1dcc88c1edf0ea6cfd4d65b85306
https://github.com/java-learners/biojava/tree/26ff03de564d1dcc88c1edf0ea6cfd4d65b85306
Develop off the snaspshot.https://github.com/java-learners/biojava/commit/9b4ad9aa50d7c300418a41809c0d9426f3524b5b
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
9b4ad9ahttps://github.com/java-learners/biojava/commit/9b4ad9aa50d7c300418a41809c0d9426f3524b5b
https://github.com/java-learners/biojava/tree/9b4ad9aa50d7c300418a41809c0d9426f3524b5b
Merge branch 'master' of github.com:biojava/biojava into devhttps://github.com/java-learners/biojava/commit/d2aab2d562049d7d9683829ae3485f615ecf5103
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
d2aab2dhttps://github.com/java-learners/biojava/commit/d2aab2d562049d7d9683829ae3485f615ecf5103
https://github.com/java-learners/biojava/tree/d2aab2d562049d7d9683829ae3485f615ecf5103
Build biojava against the alpha release of mmtfhttps://github.com/java-learners/biojava/commit/7dc717e6b6588e07670c4111c0ba15f74149fc15
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
7dc717ehttps://github.com/java-learners/biojava/commit/7dc717e6b6588e07670c4111c0ba15f74149fc15
https://github.com/java-learners/biojava/tree/7dc717e6b6588e07670c4111c0ba15f74149fc15
Fix small jmol display bug for internal symmetryhttps://github.com/java-learners/biojava/commit/ac354c4405b1f93752b8de6703492762eef19afe
https://github.com/lafita
lafitahttps://github.com/java-learners/biojava/commits?author=lafita
ac354c4https://github.com/java-learners/biojava/commit/ac354c4405b1f93752b8de6703492762eef19afe
https://github.com/java-learners/biojava/tree/ac354c4405b1f93752b8de6703492762eef19afe
Merge remote-tracking branch 'fork/mmtf' into alt_loc_bondshttps://github.com/java-learners/biojava/commit/14e8b741b897d87d4e8232bd78fa7617a12b53f7
https://github.com/abradle
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14e8b74https://github.com/java-learners/biojava/commit/14e8b741b897d87d4e8232bd78fa7617a12b53f7
https://github.com/java-learners/biojava/tree/14e8b741b897d87d4e8232bd78fa7617a12b53f7
Merge remote-tracking branch 'fork/entity_features' into alt_loc_bondshttps://github.com/java-learners/biojava/commit/9948dc03ca99bbc285e245fe8cf5ac9de61bb382
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
9948dc0https://github.com/java-learners/biojava/commit/9948dc03ca99bbc285e245fe8cf5ac9de61bb382
https://github.com/java-learners/biojava/tree/9948dc03ca99bbc285e245fe8cf5ac9de61bb382
Alternate locations now contain all atoms in a group.https://github.com/java-learners/biojava/commit/c1ea01ec3137324da1d25f9290f35138f2be8432
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
c1ea01ehttps://github.com/java-learners/biojava/commit/c1ea01ec3137324da1d25f9290f35138f2be8432
https://github.com/java-learners/biojava/tree/c1ea01ec3137324da1d25f9290f35138f2be8432
upgrading version nr. for some reason this was still on an old version.https://github.com/java-learners/biojava/commit/53c60d4b4eb60f2d75d141bc78c9b033c331ea78
https://github.com/andreasprlic
andreasprlichttps://github.com/java-learners/biojava/commits?author=andreasprlic
53c60d4https://github.com/java-learners/biojava/commit/53c60d4b4eb60f2d75d141bc78c9b033c331ea78
https://github.com/java-learners/biojava/tree/53c60d4b4eb60f2d75d141bc78c9b033c331ea78
Merge pull request #440 from heuermh/jdk8-javadoc-fixeshttps://github.com/java-learners/biojava/commit/4e8223ee75ef8b790b1c1b8ccb00c983dfe8782e
https://github.com/andreasprlic
andreasprlichttps://github.com/java-learners/biojava/commits?author=andreasprlic
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https://github.com/java-learners/biojava/tree/4e8223ee75ef8b790b1c1b8ccb00c983dfe8782e
Fixes for jdk8 javadoc errorshttps://github.com/java-learners/biojava/commit/169b205290af75d239dd3860f1b95a9bfc5b31c5
https://github.com/heuermh
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https://github.com/java-learners/biojava/tree/169b205290af75d239dd3860f1b95a9bfc5b31c5
Merge branch 'master' of github.com:biojava/biojava into entity_featureshttps://github.com/java-learners/biojava/commit/20a68c2d1a9afe5c4eb80d0ed15dcffa389a7e37
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Merge branch 'master' of github.com:biojava/biojava into mmtfhttps://github.com/java-learners/biojava/commit/723bfac1a300d1690955a1d380faf8c1f2487ef5
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Upstream refactoring of mmtf specificationhttps://github.com/java-learners/biojava/commit/74846cda019373cf2e0c2c28f17023c4997a3185
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https://github.com/java-learners/biojava/tree/74846cda019373cf2e0c2c28f17023c4997a3185
Updates to the biojava structure decoder due to an API change in the interrfacehttps://github.com/java-learners/biojava/commit/affb82b7d4d14bf728f7cf068984977911f25dcf
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https://github.com/java-learners/biojava/tree/affb82b7d4d14bf728f7cf068984977911f25dcf
Added a fairly poor and basic testhttps://github.com/java-learners/biojava/commit/41a0e00c1fe21fb823bed93f4150e3bb5e925ccc
https://github.com/abradle
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Update to consider the new API versioninghttps://github.com/java-learners/biojava/commit/2de8af5fa9b4cfc4dcc4bed8bc9d1b534c66681f
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Updates to for the new mmtf formathttps://github.com/java-learners/biojava/commit/b267a8a9d1cd3c51803fab08d8a76ebc1c687404
https://github.com/abradle
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Added a new MMTF parsing module in biojavahttps://github.com/java-learners/biojava/commit/d95742dd184bb66f407557c3dc0807a3da409d5f
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
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Merge pull request #437 from christiam/masterhttps://github.com/java-learners/biojava/commit/b0e076d931349d07f7190731ab0c3930c0d12d0b
https://github.com/josemduarte
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https://github.com/java-learners/biojava/tree/b0e076d931349d07f7190731ab0c3930c0d12d0b
Merge branch 'master' of github.com:christiam/biojavahttps://github.com/java-learners/biojava/commit/a6be59dc222ae38ba0f4fb38a2468cbde4a21ee4
https://github.com/christiam
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Add parameterized constructor to NCBIQBlastService to support BLAST on the cloud service providershttps://github.com/java-learners/biojava/commit/cfa1704e9e745c1182703faf5f3cfbe8835356e8
https://github.com/christiam
christiamhttps://github.com/java-learners/biojava/commits?author=christiam
cfa1704https://github.com/java-learners/biojava/commit/cfa1704e9e745c1182703faf5f3cfbe8835356e8
https://github.com/java-learners/biojava/tree/cfa1704e9e745c1182703faf5f3cfbe8835356e8
Add parametrized constructor to NCBIQBlastService to support BLAST on the cloud service providershttps://github.com/java-learners/biojava/commit/e25a8439770ed44bef094ba33d00c5d4160c60de
https://github.com/christiam
christiamhttps://github.com/java-learners/biojava/commits?author=christiam
e25a843https://github.com/java-learners/biojava/commit/e25a8439770ed44bef094ba33d00c5d4160c60de
https://github.com/java-learners/biojava/tree/e25a8439770ed44bef094ba33d00c5d4160c60de
Updates to the tests to fix for new manner of parsing entityhttps://github.com/java-learners/biojava/commit/f691fd38470e2d7702c1e49159b76d5f2a1d9709
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
f691fd3https://github.com/java-learners/biojava/commit/f691fd38470e2d7702c1e49159b76d5f2a1d9709
https://github.com/java-learners/biojava/tree/f691fd38470e2d7702c1e49159b76d5f2a1d9709
Updated test becuase we now consider non-polymeric compoundshttps://github.com/java-learners/biojava/commit/0fd9898374ac21a94274e90125d1e47255554745
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
0fd9898https://github.com/java-learners/biojava/commit/0fd9898374ac21a94274e90125d1e47255554745
https://github.com/java-learners/biojava/tree/0fd9898374ac21a94274e90125d1e47255554745
Updates to the Biojava code to include imporved handling of Entity information.https://github.com/java-learners/biojava/commit/07e1b1c1b60d2c983ba56238f073bc0e4ff0061f
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
07e1b1chttps://github.com/java-learners/biojava/commit/07e1b1c1b60d2c983ba56238f073bc0e4ff0061f
https://github.com/java-learners/biojava/tree/07e1b1c1b60d2c983ba56238f073bc0e4ff0061f
Added a new test file for entity informationhttps://github.com/java-learners/biojava/commit/44d8c3f4b5c8f75d8855df4e8a9a671a5b0f95ae
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
44d8c3fhttps://github.com/java-learners/biojava/commit/44d8c3f4b5c8f75d8855df4e8a9a671a5b0f95ae
https://github.com/java-learners/biojava/tree/44d8c3f4b5c8f75d8855df4e8a9a671a5b0f95ae
Merge pull request #434 from abradle/masterhttps://github.com/java-learners/biojava/commit/084cd4acc007fc03ef86cc0ff2357b5c4e2e5fef
https://github.com/andreasprlic
andreasprlichttps://github.com/java-learners/biojava/commits?author=andreasprlic
084cd4ahttps://github.com/java-learners/biojava/commit/084cd4acc007fc03ef86cc0ff2357b5c4e2e5fef
https://github.com/java-learners/biojava/tree/084cd4acc007fc03ef86cc0ff2357b5c4e2e5fef
Fixed a bug where nucleotide bonds were not being generated. Added a test to ensure nucleotide bonds are being generated.https://github.com/java-learners/biojava/commit/44b3e4c477a4ea98e4b39af54b14fb8b1694d436
https://github.com/abradle
abradlehttps://github.com/java-learners/biojava/commits?author=abradle
44b3e4chttps://github.com/java-learners/biojava/commit/44b3e4c477a4ea98e4b39af54b14fb8b1694d436
https://github.com/java-learners/biojava/tree/44b3e4c477a4ea98e4b39af54b14fb8b1694d436
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