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Title: GitHub - ishinder/stringtie: Transcript assembly and quantification for RNA-Seq

Open Graph Title: GitHub - ishinder/stringtie: Transcript assembly and quantification for RNA-Seq

X Title: GitHub - ishinder/stringtie: Transcript assembly and quantification for RNA-Seq

Description: Transcript assembly and quantification for RNA-Seq - ishinder/stringtie

Open Graph Description: Transcript assembly and quantification for RNA-Seq - ishinder/stringtie

X Description: Transcript assembly and quantification for RNA-Seq - ishinder/stringtie

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https://camo.githubusercontent.com/08cef40a9105b6526ca22088bc514fbfdbc9aac1ddbf8d4e6c750e3a88a44dca/68747470733a2f2f696d672e736869656c64732e696f2f62616467652f4c6963656e73652d4d49542d626c75652e737667
https://github.com/ishinder/stringtie#stringtie-efficient-transcript-assembly-and-quantitation-of-rna-seq-data
https://ccb.jhu.edu/software/stringtiehttps://ccb.jhu.edu/software/stringtie
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StringTie 3 improves total-RNA assembly by resolving nascent and mature transcripts.https://www.biorxiv.org/content/10.1101/2025.05.21.655404v1
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https://github.com/ishinder/stringtie#publications
Improved transcriptome assembly using a hybrid of long and short reads with StringTiehttps://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009730
Transcriptome assembly from long-read RNA-seq alignments with StringTie2https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1910-1
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgownhttp://www.nature.com/nprot/journal/v11/n9/full/nprot.2016.095.html
StringTie enables improved reconstruction of a transcriptome from RNA-seq readshttp://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3122.html
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