René's URL Explorer Experiment


Title: GitHub - hiruna72/slow5-dorado: fork of dorado that supports S/BLOW5 · GitHub

Open Graph Title: GitHub - hiruna72/slow5-dorado: fork of dorado that supports S/BLOW5

X Title: GitHub - hiruna72/slow5-dorado: fork of dorado that supports S/BLOW5

Description: fork of dorado that supports S/BLOW5. Contribute to hiruna72/slow5-dorado development by creating an account on GitHub.

Open Graph Description: fork of dorado that supports S/BLOW5. Contribute to hiruna72/slow5-dorado development by creating an account on GitHub.

X Description: fork of dorado that supports S/BLOW5. Contribute to hiruna72/slow5-dorado development by creating an account on GitHub.

Opengraph URL: https://github.com/hiruna72/slow5-dorado

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:e8e7e724-96bc-3d88-fc18-d59dd6a7ca4e
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id9D38:1E0640:35D7203:475D8C0:6A6551AB
html-safe-noncee6081b1af6909e97fc0a356191da7861f29726982a3f56e25c74cf04fe49e366
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5RDM4OjFFMDY0MDozNUQ3MjAzOjQ3NUQ4QzA6NkE2NTUxQUIiLCJ2aXNpdG9yX2lkIjoiMzkzOTA4MjI0ODg5NDM3MDIxOSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmacd9bec34ecfe26711a2e2bf51dc682f9bb60f7fc064f27a973af2b1be8db3df8c
hovercard-subject-tagrepository:498219718
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/hiruna72/slow5-dorado
twitter:imagehttps://opengraph.githubassets.com/851d236a879a9b066040106d3572bd13de72f8acf9b6d1cb803491d4020b430c/hiruna72/slow5-dorado
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/851d236a879a9b066040106d3572bd13de72f8acf9b6d1cb803491d4020b430c/hiruna72/slow5-dorado
og:image:altfork of dorado that supports S/BLOW5. Contribute to hiruna72/slow5-dorado development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None52c76df668885aaff23b50bdca1fa1ea44ac9c1553e888ebc70ff1e4daa4625b
turbo-cache-controlno-cache
go-importgithub.com/hiruna72/slow5-dorado git https://github.com/hiruna72/slow5-dorado.git
octolytics-dimension-user_id23216727
octolytics-dimension-user_loginhiruna72
octolytics-dimension-repository_id498219718
octolytics-dimension-repository_nwohiruna72/slow5-dorado
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id493440634
octolytics-dimension-repository_parent_nwonanoporetech/dorado
octolytics-dimension-repository_network_root_id493440634
octolytics-dimension-repository_network_root_nwonanoporetech/dorado
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release309153364422b3c499922d1a2a6404910a58ed8e
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/hiruna72/slow5-dorado#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fhiruna72%2Fslow5-dorado
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
Code QualityEnforce quality at mergehttps://github.com/features/code-quality
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/open-source/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/open-source/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/enterprise/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fhiruna72%2Fslow5-dorado
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=hiruna72%2Fslow5-dorado
Reloadhttps://github.com/hiruna72/slow5-dorado
Reloadhttps://github.com/hiruna72/slow5-dorado
Reloadhttps://github.com/hiruna72/slow5-dorado
hiruna72 https://github.com/hiruna72
slow5-doradohttps://github.com/hiruna72/slow5-dorado
nanoporetech/doradohttps://github.com/nanoporetech/dorado
Notifications https://github.com/login?return_to=%2Fhiruna72%2Fslow5-dorado
Fork 1 https://github.com/login?return_to=%2Fhiruna72%2Fslow5-dorado
Star 13 https://github.com/login?return_to=%2Fhiruna72%2Fslow5-dorado
Code https://github.com/hiruna72/slow5-dorado
Issues 0 https://github.com/hiruna72/slow5-dorado/issues
Pull requests 0 https://github.com/hiruna72/slow5-dorado/pulls
Actions https://github.com/hiruna72/slow5-dorado/actions
Projects https://github.com/hiruna72/slow5-dorado/projects
Security and quality 0 https://github.com/hiruna72/slow5-dorado/security
Insights https://github.com/hiruna72/slow5-dorado/pulse
Code https://github.com/hiruna72/slow5-dorado
Issues https://github.com/hiruna72/slow5-dorado/issues
Pull requests https://github.com/hiruna72/slow5-dorado/pulls
Actions https://github.com/hiruna72/slow5-dorado/actions
Projects https://github.com/hiruna72/slow5-dorado/projects
Security and quality https://github.com/hiruna72/slow5-dorado/security
Insights https://github.com/hiruna72/slow5-dorado/pulse
https://github.com/hiruna72/slow5-dorado
Brancheshttps://github.com/hiruna72/slow5-dorado/branches
Tagshttps://github.com/hiruna72/slow5-dorado/tags
https://github.com/hiruna72/slow5-dorado/branches
https://github.com/hiruna72/slow5-dorado/tags
9,943 Commitshttps://github.com/hiruna72/slow5-dorado/commits/release-v2.0.0-slow5/
https://github.com/hiruna72/slow5-dorado/commits/release-v2.0.0-slow5/
.githubhttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/.github
.githubhttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/.github
.gitlabhttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/.gitlab
.gitlabhttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/.gitlab
cmakehttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/cmake
cmakehttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/cmake
doradohttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/dorado
doradohttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/dorado
regression_testhttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/regression_test
regression_testhttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/regression_test
testshttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/tests
testshttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/tests
tetrahttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/tetra
tetrahttps://github.com/hiruna72/slow5-dorado/tree/release-v2.0.0-slow5/tetra
.clang-formathttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.clang-format
.clang-formathttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.clang-format
.clang-tidyhttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.clang-tidy
.clang-tidyhttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.clang-tidy
.gitattributeshttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.gitattributes
.gitattributeshttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.gitattributes
.gitignorehttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.gitignore
.gitignorehttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.gitignore
.gitlab-ci.ymlhttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.gitlab-ci.yml
.gitlab-ci.ymlhttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.gitlab-ci.yml
.gitmoduleshttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.gitmodules
.gitmoduleshttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.gitmodules
.pre-commit-config.yamlhttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.pre-commit-config.yaml
.pre-commit-config.yamlhttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/.pre-commit-config.yaml
CHANGELOG.mdhttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/CHANGELOG.md
CHANGELOG.mdhttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/CHANGELOG.md
CMakeLists.txthttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/CMakeLists.txt
CMakeLists.txthttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/CMakeLists.txt
DEV.mdhttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/DEV.md
DEV.mdhttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/DEV.md
LICENCE.txthttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/LICENCE.txt
LICENCE.txthttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/LICENCE.txt
README.mdhttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/README.md
README.mdhttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/README.md
READMEhttps://github.com/hiruna72/slow5-dorado
Licensehttps://github.com/hiruna72/slow5-dorado
https://github.com/hiruna72/slow5-dorado#slow5-dorado
Doradohttps://github.com/nanoporetech/dorado
S/BLOW5https://www.nature.com/articles/s41587-021-01147-4
buttery-eelhttps://github.com/Psy-Fer/buttery-eel
https://github.com/hiruna72/slow5-dorado#features
S/BLOW5https://www.nature.com/articles/s41587-021-01147-4
BLOW5 Vs POD5https://academic.oup.com/gigascience/article/doi/10.1093/gigascience/giaf118/8287640
report an issuehttps://github.com/hiruna72/slow5-dorado/issues
https://github.com/hiruna72/slow5-dorado#installation
Releaseshttps://github.com/hiruna72/slow5-dorado/releases/
https://github.com/hiruna72/slow5-dorado#running
https://github.com/hiruna72/slow5-dorado#platforms
https://github.com/hiruna72/slow5-dorado#dorado
Dorado Documentationhttps://software-docs.nanoporetech.com/dorado/latest/
https://github.com/hiruna72/slow5-dorado#features-1
Platformshttps://github.com/hiruna72/slow5-dorado#platforms
Modified basecallinghttps://software-docs.nanoporetech.com/dorado/latest/basecaller/mods/
Duplex basecallinghttps://software-docs.nanoporetech.com/dorado/latest/basecaller/duplex/
Duplexhttps://youtu.be/8DVMG7FEBys
barcode classificationhttps://software-docs.nanoporetech.com/dorado/latest/barcoding/barcoding/
poly(A) tail estimationhttps://software-docs.nanoporetech.com/dorado/latest/basecaller/polya_estimation/
single-read error correctionhttps://software-docs.nanoporetech.com/dorado/latest/assembly/correct/
POD5https://github.com/nanoporetech/pod5-file-format
documentationhttps://software-docs.nanoporetech.com/pod5/latest/
report an issuehttps://github.com/nanoporetech/dorado/issues
https://github.com/hiruna72/slow5-dorado#installation-1
dorado-2.0.0-linux-x64https://cdn.oxfordnanoportal.com/software/analysis/dorado-2.0.0-linux-x64.tar.gz
dorado-2.0.0-linux-arm64-cuda12 - Orin onlyhttps://cdn.oxfordnanoportal.com/software/analysis/dorado-2.0.0-linux-arm64.tar.gz
dorado-2.0.0-linux-arm64-cuda13 - Jetson Thor / DGX Sparkhttps://cdn.oxfordnanoportal.com/software/analysis/dorado-2.0.0-linux-arm64-cuda-13.0.tar.gz
dorado-2.0.0-osx-arm64https://cdn.oxfordnanoportal.com/software/analysis/dorado-2.0.0-osx-arm64.zip
dorado-2.0.0-win64https://cdn.oxfordnanoportal.com/software/analysis/dorado-2.0.0-win64.zip
dorado documentationhttps://software-docs.nanoporetech.com/dorado/latest/
DEV.mdhttps://github.com/hiruna72/slow5-dorado/blob/release-v2.0.0-slow5/DEV.md
https://github.com/hiruna72/slow5-dorado#platforms-1
report an issuehttps://github.com/nanoporetech/dorado/issues
herehttps://aws.amazon.com/blogs/hpc/benchmarking-the-oxford-nanopore-technologies-basecallers-on-aws/
https://github.com/hiruna72/slow5-dorado#performance-tips
https://github.com/hiruna72/slow5-dorado#running-1
https://github.com/hiruna72/slow5-dorado#simplex-basecalling
simplex basecallinghttps://software-docs.nanoporetech.com/dorado/latest/basecaller/simplex/
https://github.com/hiruna72/slow5-dorado#dna-adapter-and-primer-trimming
read trimminghttps://software-docs.nanoporetech.com/dorado/latest/basecaller/read_trimming/
https://github.com/hiruna72/slow5-dorado#modified-basecalling
modified basecallinghttps://software-docs.nanoporetech.com/dorado/latest/basecaller/mods/#introduction
models argumenthttps://software-docs.nanoporetech.com/dorado/latest/models/selection/
modified basecalling contexthttps://software-docs.nanoporetech.com/dorado/latest/basecaller/mods/#modification-context
models listhttps://software-docs.nanoporetech.com/dorado/latest/models/list/
Duplex basecallinghttps://software-docs.nanoporetech.com/dorado/latest/basecaller/duplex/#hemi-methylation-duplex-basecalling
https://github.com/hiruna72/slow5-dorado#duplex
Dorado duplex basecalling documentationhttps://software-docs.nanoporetech.com/dorado/latest/basecaller/duplex/
https://github.com/hiruna72/slow5-dorado#alignment
minimap2https://github.com/lh3/minimap2
Dorado aligner documentationhttps://software-docs.nanoporetech.com/dorado/latest/basecaller/alignment/
https://github.com/hiruna72/slow5-dorado#sequencing-summary
https://github.com/hiruna72/slow5-dorado#barcode-classification
Dorado barcoding documentationhttps://software-docs.nanoporetech.com/dorado/latest/barcoding/barcoding/
https://github.com/hiruna72/slow5-dorado#polya-tail-estimation
dorado poly(A) estimation documentationhttps://software-docs.nanoporetech.com/dorado/latest/basecaller/polya_estimation/
https://github.com/hiruna72/slow5-dorado#read-error-correction
HERROhttps://github.com/lbcb-sci/herro
Dorado correct documentationhttps://software-docs.nanoporetech.com/dorado/latest/assembly/correct/
https://github.com/hiruna72/slow5-dorado#polishing
Hifiasmhttps://github.com/chhylp123/hifiasm
Flyehttps://github.com/mikolmogorov/Flye
this sectionhttps://software-docs.nanoporetech.com/dorado/latest/assembly/polish/#polishing-diploidpolyploid-assemblies
Dorado polish documentationhttps://software-docs.nanoporetech.com/dorado/latest/assembly/polish/
https://github.com/hiruna72/slow5-dorado#available-basecalling-models
all available Dorado modelshttps://software-docs.nanoporetech.com/dorado/latest/models/list/
models automaticallyhttps://software-docs.nanoporetech.com/dorado/latest/models/selection/#automatic-model-download
model argumenthttps://software-docs.nanoporetech.com/dorado/latest/models/selection/
Dorado downloadhttps://software-docs.nanoporetech.com/dorado/latest/models/downloader/
Dorado model selectionhttps://software-docs.nanoporetech.com/dorado/latest/models/selection/
https://github.com/hiruna72/slow5-dorado#troubleshooting-guide
Dorado troubleshooting documentationhttps://software-docs.nanoporetech.com/dorado/latest/troubleshooting/troubleshooting/
https://github.com/hiruna72/slow5-dorado#licence-and-copyright
https://nanoporetech.comhttps://nanoporetech.com
Readmehttps://github.com/hiruna72/slow5-dorado#readme-ov-file
Licensehttps://github.com/hiruna72/slow5-dorado#License-1-ov-file
Activityhttps://github.com/hiruna72/slow5-dorado/activity
13 starshttps://github.com/hiruna72/slow5-dorado/stargazers
1 watchinghttps://github.com/hiruna72/slow5-dorado/watchers
1 forkhttps://github.com/hiruna72/slow5-dorado/forks
Report repositoryhttps://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fhiruna72%2Fslow5-dorado&report=hiruna72+%28user%29
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.