René's URL Explorer Experiment


Title: GitHub - feiglab/prefmd2 · GitHub

Open Graph Title: GitHub - feiglab/prefmd2

X Title: GitHub - feiglab/prefmd2

Description: Contribute to feiglab/prefmd2 development by creating an account on GitHub.

Open Graph Description: Contribute to feiglab/prefmd2 development by creating an account on GitHub.

X Description: Contribute to feiglab/prefmd2 development by creating an account on GitHub.

Mail addresses
mfeiglab@gmail.com

Opengraph URL: https://github.com/feiglab/prefmd2

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:7f54631c-2a05-f620-23f6-759884cd7b59
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idA538:D1053:334415:4505B6:6A4D3634
html-safe-nonce71ec714aa6b1cef4622f4f943200827f91b3e79cd8a2e4162b1fd056b9e3ed06
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJBNTM4OkQxMDUzOjMzNDQxNTo0NTA1QjY6NkE0RDM2MzQiLCJ2aXNpdG9yX2lkIjoiNzU1MjUxNDA4NDE0MDAzNzY4NCIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac1f4e1861bac0524c60328f0a8f481e7ac953327f1729830052d820207e214e4f
hovercard-subject-tagrepository:331421566
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/feiglab/prefmd2
twitter:imagehttps://opengraph.githubassets.com/650748a1b460eb60406004d28789b5f228850622e0a6b369c1867ac3fcd3031d/feiglab/prefmd2
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/650748a1b460eb60406004d28789b5f228850622e0a6b369c1867ac3fcd3031d/feiglab/prefmd2
og:image:altContribute to feiglab/prefmd2 development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None92571a8944142227b7e19cd10918b1ddd06e5066c1ad5bc7e4769cf6140a87e6
turbo-cache-controlno-cache
go-importgithub.com/feiglab/prefmd2 git https://github.com/feiglab/prefmd2.git
octolytics-dimension-user_id29537443
octolytics-dimension-user_loginfeiglab
octolytics-dimension-repository_id331421566
octolytics-dimension-repository_nwofeiglab/prefmd2
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id331421566
octolytics-dimension-repository_network_root_nwofeiglab/prefmd2
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release56fc8347865a14e2ec811533d68f929cf4e0ec19
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/feiglab/prefmd2#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Ffeiglab%2Fprefmd2
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Ffeiglab%2Fprefmd2
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=feiglab%2Fprefmd2
Reloadhttps://github.com/feiglab/prefmd2
Reloadhttps://github.com/feiglab/prefmd2
Reloadhttps://github.com/feiglab/prefmd2
feiglab https://github.com/feiglab
prefmd2https://github.com/feiglab/prefmd2
Notifications https://github.com/login?return_to=%2Ffeiglab%2Fprefmd2
Fork 2 https://github.com/login?return_to=%2Ffeiglab%2Fprefmd2
Star 6 https://github.com/login?return_to=%2Ffeiglab%2Fprefmd2
Code https://github.com/feiglab/prefmd2
Issues 4 https://github.com/feiglab/prefmd2/issues
Pull requests 0 https://github.com/feiglab/prefmd2/pulls
Actions https://github.com/feiglab/prefmd2/actions
Projects https://github.com/feiglab/prefmd2/projects
Security and quality 0 https://github.com/feiglab/prefmd2/security
Insights https://github.com/feiglab/prefmd2/pulse
Code https://github.com/feiglab/prefmd2
Issues https://github.com/feiglab/prefmd2/issues
Pull requests https://github.com/feiglab/prefmd2/pulls
Actions https://github.com/feiglab/prefmd2/actions
Projects https://github.com/feiglab/prefmd2/projects
Security and quality https://github.com/feiglab/prefmd2/security
Insights https://github.com/feiglab/prefmd2/pulse
https://github.com/feiglab/prefmd2
Brancheshttps://github.com/feiglab/prefmd2/branches
Tagshttps://github.com/feiglab/prefmd2/tags
https://github.com/feiglab/prefmd2/branches
https://github.com/feiglab/prefmd2/tags
8 Commitshttps://github.com/feiglab/prefmd2/commits/main/
https://github.com/feiglab/prefmd2/commits/main/
data/ff/c36m.CMAPmod.hvhttps://github.com/feiglab/prefmd2/tree/main/data/ff/c36m.CMAPmod.hv
data/ff/c36m.CMAPmod.hvhttps://github.com/feiglab/prefmd2/tree/main/data/ff/c36m.CMAPmod.hv
defaulthttps://github.com/feiglab/prefmd2/tree/main/default
defaulthttps://github.com/feiglab/prefmd2/tree/main/default
examplehttps://github.com/feiglab/prefmd2/tree/main/example
examplehttps://github.com/feiglab/prefmd2/tree/main/example
scriptshttps://github.com/feiglab/prefmd2/tree/main/scripts
scriptshttps://github.com/feiglab/prefmd2/tree/main/scripts
LICENSEhttps://github.com/feiglab/prefmd2/blob/main/LICENSE
LICENSEhttps://github.com/feiglab/prefmd2/blob/main/LICENSE
README.mdhttps://github.com/feiglab/prefmd2/blob/main/README.md
README.mdhttps://github.com/feiglab/prefmd2/blob/main/README.md
READMEhttps://github.com/feiglab/prefmd2
AGPL-3.0 licensehttps://github.com/feiglab/prefmd2
https://github.com/feiglab/prefmd2#prefmd2-protein-refinement-via-molecular-dynamics-version-2
https://feig.bch.msu.edu/web/services/prefmd/https://feig.bch.msu.edu/web/services/prefmd/
https://github.com/feiglab/prefmdhttps://github.com/feiglab/prefmd
https://github.com/feiglab/prefmd2#1-installation-prerequisites-and-dependencies
https://github.com/feiglab/prefmd2#11-python-dependencies
http://openmm.org/http://openmm.org/
https://github.com/mdtraj/mdtrajhttps://github.com/mdtraj/mdtraj
https://scikit-learn.org/stable/https://scikit-learn.org/stable/
https://salilab.org/modeller/https://salilab.org/modeller/
https://github.com/feiglab/prefmd2#12-required-third-party-programs
https://github.com/feiglab/prefmd2#12a-basic-requirements
http://charmm.chemistry.harvard.eduhttp://charmm.chemistry.harvard.edu
https://github.com/mmtsb/toolsethttps://github.com/mmtsb/toolset
https://github.com/feiglab/locprefmdhttps://github.com/feiglab/locprefmd
https://github.com/feiglab/mdconvhttps://github.com/feiglab/mdconv
https://zhanglab.ccmb.med.umich.edu/TM-score/https://zhanglab.ccmb.med.umich.edu/TM-score/
https://zhanglab.ccmb.med.umich.edu/RW/https://zhanglab.ccmb.med.umich.edu/RW/
http://dunbrack.fccc.edu/SCWRL3.php/http://dunbrack.fccc.edu/SCWRL3.php/
https://github.com/feiglab/prefmd2#12b-optional-dependencies-only-used-in-multiple-initial-models-mode
https://github.com/soedinglab/hh-suitehttps://github.com/soedinglab/hh-suite
https://uniclust.mmseqs.com/https://uniclust.mmseqs.com/
http://wwwuser.gwdg.de/~compbiol/data/hhsuite/databases/hhsuite_dbs/http://wwwuser.gwdg.de/~compbiol/data/hhsuite/databases/hhsuite_dbs/
https://zhanglab.ccmb.med.umich.edu/TM-align/https://zhanglab.ccmb.med.umich.edu/TM-align/
https://www.rosettacommons.org/softwarehttps://www.rosettacommons.org/software
https://www.gnu.org/software/parallel/https://www.gnu.org/software/parallel/
https://github.com/feiglab/prefmd2#2-obtaining-and-configuring-prefmd2
https://github.com/feiglab/prefmd2#21-getting-prefmd2
https://github.com/feiglab/prefmd2#22-preparing-force-field-files
https://github.com/feiglab/prefmd2#3-how-to-use-prefmd2
https://github.com/feiglab/prefmd2#31-basic-usage
https://github.com/feiglab/prefmd2#32-list-of-options
https://github.com/feiglab/prefmd2#4-release-log
https://github.com/feiglab/prefmd2#5-references
33562962https://pubmed.ncbi.nlm.nih.gov/33562962/
https://github.com/feiglab/prefmd2#6-contact
Readme https://github.com/feiglab/prefmd2#readme-ov-file
AGPL-3.0 license https://github.com/feiglab/prefmd2#AGPL-3.0-1-ov-file
Please reload this pagehttps://github.com/feiglab/prefmd2
Activityhttps://github.com/feiglab/prefmd2/activity
2 forkshttps://github.com/feiglab/prefmd2/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Ffeiglab%2Fprefmd2&report=feiglab+%28user%29
Releaseshttps://github.com/feiglab/prefmd2/releases
Packages 0https://github.com/users/feiglab/packages?repo_name=prefmd2
Please reload this pagehttps://github.com/feiglab/prefmd2
Contributorshttps://github.com/feiglab/prefmd2/graphs/contributors
Please reload this pagehttps://github.com/feiglab/prefmd2
Python 76.1% https://github.com/feiglab/prefmd2/search?l=python
Rich Text Format 23.8% https://github.com/feiglab/prefmd2/search?l=rich-text-format
Shell 0.1% https://github.com/feiglab/prefmd2/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.