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Title: GitHub - egemassmer/PracticalPythonProgrammingForBiologists: An introduction to python programming for Biologists and Bioinformaticians · GitHub

Open Graph Title: GitHub - egemassmer/PracticalPythonProgrammingForBiologists: An introduction to python programming for Biologists and Bioinformaticians

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Description: An introduction to python programming for Biologists and Bioinformaticians - egemassmer/PracticalPythonProgrammingForBiologists

Open Graph Description: An introduction to python programming for Biologists and Bioinformaticians - egemassmer/PracticalPythonProgrammingForBiologists

X Description: An introduction to python programming for Biologists and Bioinformaticians - egemassmer/PracticalPythonProgrammingForBiologists

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140 Commits	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/commits/main/
	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/commits/main/
Day1	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/tree/main/Day1
Day1	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/tree/main/Day1
Day2	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/tree/main/Day2
Day2	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/tree/main/Day2
Day3	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/tree/main/Day3
Day3	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/tree/main/Day3
Day4	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/tree/main/Day4
Day4	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/tree/main/Day4
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Solved	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/tree/main/Solved
Supplementary	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/tree/main/Supplementary
Supplementary	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/tree/main/Supplementary
README.md	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/README.md
README.md	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/README.md
README	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists
	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists#practical-python-programming-for-biologists
	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Images/Headshot-lowres.png
Compass Bioinformatics	https://www.CompassBioinformatics.co.uk
@passdan	https://www.twitter.com/passdan
@CompassBioinf	https://www.twitter.com/CompassBioinf
	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists#overview
	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists#course-design
Google Colab	https://colab.research.google.com/
	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists#schedule
	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists#day-1
Introduction, concepts, & data types	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day1/P34B-Day1-Introduction.ipynb
Basic data types (strings and numbers), & Data manipulation	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day1/P34B-Day1-BasicDataTypes.ipynb
More Data Types: Lists (and Tuples & Ranges)	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day1/P34B-Day1-Lists_and_more.ipynb
Project: Manipulating DNA sequences - Transcription Factor Binding	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day1/P34B-Day1-project.ipynb
	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists#day-2
More Data Types: Dictionaries	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day2/P34B-Day1-Dictionaries.ipynb
Loops	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day2/P34B-Day2-Loops.ipynb
Conditionals	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day2/P34B-Day2-Conditionals.ipynb
Advanced string manipulation	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day2/P34B-Day2-AdvancedStrings.ipynb
Project: Messy data handling	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day2/P34B-Day2-Project-MessyData.ipynb
	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists#day-3
I/O handling	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day3/P34B-Day3-IO.ipynb
Modules and libraries: BioPython	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day3/P34B-Day3-Modules-Biopython.ipynb
Organising code with functions	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day3/P34B-Day3-Functions.ipynb
Project: Chipseq, bespoke file formats, and functional organisation	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day3/P34B-Day3-Project-ChipSeq.ipynb
	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists#day-4
Modules and libraries: pandas, numPy, & sciPy	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day4/P34B-Day4-Modules-Stats.ipynb
Data visualisation packages (matplotlib/seaborn/plotly)	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day4/P34B-Day4-Data_visualisation.ipynb
Your code as command line programs & argparse	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day4/P34B-Day3-CLI_and_argparse.ipynb
Future Directions	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Supplementary/P34B-FutureDirections.md
Project: objects and stats - viral genomics	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day3/P34B-Day3-Project-covid_modules.ipynb
	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists#supplementary
Classes and Object Oriented code	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Day3/P34B-Day3-ClassesAndObjects.ipynb
Comprehensions	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Supplementary/P34B-Comprehensions.ipynb
Coding in the age of ChatGPT and AI bots	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Supplementary/P34B-ChatGPT_and_AIs.ipynb
Data Types Review	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists/blob/main/Supplementary/P34B-DataTypes-review.ipynb
Readme	https://github.com/egemassmer/PracticalPythonProgrammingForBiologists#readme-ov-file
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