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Title: Revamp delete by dimitri-yatsenko · Pull Request #424 · datajoint/datajoint-python · GitHub

Open Graph Title: Revamp delete by dimitri-yatsenko · Pull Request #424 · datajoint/datajoint-python

X Title: Revamp delete by dimitri-yatsenko · Pull Request #424 · datajoint/datajoint-python

Description: Optimize delete. Previously entries were counted first and then deleted. Now they are deleted within a transaction with the count reported to the users. Only afterwards, the user is asked to confirm before commit. Complete class-based relational algebra. Previously, all relational operators required instantiating user classes. Now all operators can be performed directly on the classes. For example, one can do this now stimulus.Sync & (stimulus.Trial * stimulus.Trippy.proj()) Previously this query would have required instantiating the relations: stimulus.Sync() & (stimulus.Trial() * stimulus.Trippy().proj()) This change is fully backward compatible. Add efficient iterator capability to relational operands: for session in stimulus.Sync: print(session) for trippy_trial in stimulus.Trial * stimulus.Trippy & 'animal_id=16342': plt.imshow(trippy_trial.movie[:,:,0]) This uses memory efficiently by retrieving only the primary keys first and then fetching each individual item in its entirety at each iteration. However, when the relation only has primary keys, then then only one fetch operation is performed. The following two operations are essentially equivalent: for key in stimulus.Sync.proj(): print(key) for key in stimulus.Sync.fetch('KEY'): print(key) Fix #418 Fix #430 This PR is based off #422

Open Graph Description: Optimize delete. Previously entries were counted first and then deleted. Now they are deleted within a transaction with the count reported to the users. Only afterwards, the user is asked to conf...

X Description: Optimize delete. Previously entries were counted first and then deleted. Now they are deleted within a transaction with the count reported to the users. Only afterwards, the user is asked to conf...

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c49b674 begin revamping delete dimitri-yatsenko Dec 27, 2017 https://github.com/datajoint/datajoint-python/pull/424/commits/c49b6740fad0143bca103b5735c3a667579326f1
5b0f4c0 Merge branch 'fetch-simple' into revamp-delete dimitri-yatsenko Dec 28, 2017 https://github.com/datajoint/datajoint-python/pull/424/commits/5b0f4c094ec6be249343c586fc27861fc6f4f661
4f1cb9d allow relational binary operations with a RelationalOperand class rat… dimitri-yatsenko Dec 28, 2017 https://github.com/datajoint/datajoint-python/pull/424/commits/4f1cb9dcd852a9cfeebe65faa9e1dab0a703248d
1546737 make quick_delete count deleted items dimitri-yatsenko Dec 28, 2017 https://github.com/datajoint/datajoint-python/pull/424/commits/1546737b7ea93dc65912c82562e60d56596918aa
d2ae2d2 added iterator to RelationalOperand dimitri-yatsenko Dec 28, 2017 https://github.com/datajoint/datajoint-python/pull/424/commits/d2ae2d217597f76e46aa903c73999aece783d75b
757f624 improve relation iterator dimitri-yatsenko Dec 28, 2017 https://github.com/datajoint/datajoint-python/pull/424/commits/757f624a3dc822f2153097f34979367e85aac009
303b1e6 simplify negation in restrictions dimitri-yatsenko Dec 28, 2017 https://github.com/datajoint/datajoint-python/pull/424/commits/303b1e6a25c771954d2d6136680aa95c896a91ab
71e4fe8 fix #372 -- a table with an applied restriction condition cannot be d… dimitri-yatsenko Dec 28, 2017 https://github.com/datajoint/datajoint-python/pull/424/commits/71e4fe85dd9c5b8e223d97d0d4d5fb1189c29b08
21d4ca8 cosmetic dimitri-yatsenko Dec 29, 2017 https://github.com/datajoint/datajoint-python/pull/424/commits/21d4ca8b5bfbb865c42c6cabc181020844c039c0
e4620b2 Merge branch 'master' of https://github.com/datajoint/datajoint-pytho… dimitri-yatsenko Dec 29, 2017 https://github.com/datajoint/datajoint-python/pull/424/commits/e4620b2220eaddbbb40bfc080f077339d70bfd1d
12402da Merge branch 'fetch-simple' into revamp-delete dimitri-yatsenko Dec 29, 2017 https://github.com/datajoint/datajoint-python/pull/424/commits/12402da7ae8ae17590ffcb212bfa96db93c9a16c
ab731f4 fix RelationalOperand operator dimitri-yatsenko Dec 29, 2017 https://github.com/datajoint/datajoint-python/pull/424/commits/ab731f4b9698cd509bfdbb19594e2228fbb85524
579e7d3 add iterator capability to UserRelation classes dimitri-yatsenko Dec 29, 2017 https://github.com/datajoint/datajoint-python/pull/424/commits/579e7d3ddbc477631862a3afa91804e6b45613a4
7581202 fix counting deleted items in delete_quick dimitri-yatsenko Jan 1, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/7581202d1143b8ae82bc00c55f534a4639571ff4
1462abc fix #418 -- create the external cache directory if missing dimitri-yatsenko Jan 2, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/1462abc150b011ee91554137c793aea19c0a0a9f
8e98f66 Remove delete confirmation when there is nothing to delete. dimitri-yatsenko Jan 2, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/8e98f66f42af5e4e155855ef905a03abec850f4b
2dabffa fix logic in delete confirmation dimitri-yatsenko Jan 2, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/2dabffa02d21d88d4e51710694559a2bc6b717fb
8e07b08 cosmetic dimitri-yatsenko Jan 2, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/8e07b0838e9834ff87ab8b612a0a7352eb9f0510
1686004 Merge branch 'master' of https://github.com/datajoint/datajoint-pytho… dimitri-yatsenko Jan 2, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/16860049669b62c1e91d269932014fde4ea7a744
3edb603 check join compatibility in relational operators dimitri-yatsenko Jan 2, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/3edb603d1384e539cccf1b58d331874a422ff332
2685018 correct the join compatibility test dimitri-yatsenko Jan 2, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/2685018cfc4addd3db384068ffc7c8ec8c145575
76f8b8e Merge branch 'revamp-delete' of https://github.com/dimitri-yatsenko/d… dimitri-yatsenko Jan 2, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/76f8b8ecdb5a56544d7437681eb5556e7bb1565c
27b939f raise an error when attempting cascading deletes across renamed forei… dimitri-yatsenko Jan 8, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/27b939f72a21d093eac3659200d3357eac40c18c
18a83ce minor user message change dimitri-yatsenko Jan 9, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/18a83ce7a7130cca7ca5c7dc84345322cba5ad15
2c96ca4 alter error message is BaseRelation.drop. dimitri-yatsenko Jan 10, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/2c96ca4d2c6c99ac109971fbc7cb4dd4c8c0d5ef
1da0346 fix typo in error message in BaseRelation/delete dimitri-yatsenko Jan 10, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/1da0346529d5730769c18337ba1e51f74eced7ea
ddcd89a Fix #430 dimitri-yatsenko Jan 10, 2018 https://github.com/datajoint/datajoint-python/pull/424/commits/ddcd89ab680e77085961edd523779810d872fed5
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