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Description: Official git repository for Biopython (originally converted from CVS) - biopython/biopython

Open Graph Description: Official git repository for Biopython (originally converted from CVS) - biopython/biopython

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Missing libm linkage causes undefined symbol errorshttps://github.com/biopython/biopython/issues/5137
BwL1289https://github.com/biopython/biopython/issues?q=is%3Aissue%20state%3Aopen%20author%3ABwL1289
MMCif2Dict doesn't parse all keys in extremely large structureshttps://github.com/biopython/biopython/issues/5136
jonahZoldan-mfihttps://github.com/biopython/biopython/issues?q=is%3Aissue%20state%3Aopen%20author%3AjonahZoldan-mfi
Incompatible with NumPy 2.4https://github.com/biopython/biopython/issues/5135
piecolehttps://github.com/biopython/biopython/issues?q=is%3Aissue%20state%3Aopen%20author%3Apiecole
PDBParser is not thread-safe when used in ThreadPoolExecutorhttps://github.com/biopython/biopython/issues/5131
yiyabohttps://github.com/biopython/biopython/issues?q=is%3Aissue%20state%3Aopen%20author%3Ayiyabo
Why does read_PIC_seq give different distances and angles for each residue?https://github.com/biopython/biopython/issues/5119
HakonOncohttps://github.com/biopython/biopython/issues?q=is%3Aissue%20state%3Aopen%20author%3AHakonOnco
Proposal: Optional ProteinSeq class for protein sequenceshttps://github.com/biopython/biopython/issues/5115
harisj739https://github.com/biopython/biopython/issues?q=is%3Aissue%20state%3Aopen%20author%3Aharisj739
IC_residue's get_angle function gives different results for psi and "N:CA:C:1N"https://github.com/biopython/biopython/issues/5113
HakonOncohttps://github.com/biopython/biopython/issues?q=is%3Aissue%20state%3Aopen%20author%3AHakonOnco
[CVE-2025-68463] Bio.Entrez.DataHandler, Bio.Entrez.read, Bio.Entrez.parse are vulnerable to XXE and SSRFhttps://github.com/biopython/biopython/issues/5109
hartworkhttps://github.com/biopython/biopython/issues?q=is%3Aissue%20state%3Aopen%20author%3Ahartwork
GenBank multi-line qualifier value parsed incorrectly in specific caseshttps://github.com/biopython/biopython/issues/5101
BioGavinhttps://github.com/biopython/biopython/issues?q=is%3Aissue%20state%3Aopen%20author%3ABioGavin
Proposal: Integrate advanced peptide descriptors into Bio.SeqUtilshttps://github.com/biopython/biopython/issues/5100
flyfir248https://github.com/biopython/biopython/issues?q=is%3Aissue%20state%3Aopen%20author%3Aflyfir248
FoldX PositionScan: "Specified residue not found"https://github.com/biopython/biopython/issues/5096
LLG00https://github.com/biopython/biopython/issues?q=is%3Aissue%20state%3Aopen%20author%3ALLG00
Warning: Package 'Bio.Align.substitution_matrices' is absent from the packages configuration.https://github.com/biopython/biopython/issues/5092
peterjchttps://github.com/biopython/biopython/issues?q=is%3Aissue%20state%3Aopen%20author%3Apeterjc
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