René's URL Explorer Experiment


Title: GitHub - biojava/biojava at bugfixes-4.2

Open Graph Title: GitHub - biojava/biojava at bugfixes-4.2

X Title: GitHub - biojava/biojava at bugfixes-4.2

Description: :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. - GitHub - biojava/biojava at bugfixes-4.2

Open Graph Description: :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. - GitHub - biojava/biojava at bugfixes-4.2

X Description: :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. - GitHub - biojava/biojava at bugfixes-4.2

Opengraph URL: https://github.com/biojava/biojava

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository/tree/*name(/*path)
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:32888227-6e98-f942-b4f6-06c8ed9d66f6
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idD652:10C509:6BF1D5:99DAE5:696F87AB
html-safe-nonce84a4ae13bae0776ddd1e0fa2cf99159dcc019f4bb802fe8713cf573f5c5a9fcc
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJENjUyOjEwQzUwOTo2QkYxRDU6OTlEQUU1OjY5NkY4N0FCIiwidmlzaXRvcl9pZCI6Ijg0NDUzMDY0MTkwOTQxOTQwOTEiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac24ad8c8db06d989c08b83659a56bd5c3e21004f2a6282560a022cc9185c7b619
hovercard-subject-tagrepository:9199359
github-keyboard-shortcutsrepository,source-code,file-tree,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location///files/disambiguate
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/biojava/biojava/tree/bugfixes-4.2
twitter:imagehttps://opengraph.githubassets.com/6b73e619db9fa4032c4c5f5ec15029fe2cb54a62491cfffbef404e44b3eadf91/biojava/biojava
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/6b73e619db9fa4032c4c5f5ec15029fe2cb54a62491cfffbef404e44b3eadf91/biojava/biojava
og:image:alt:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. - GitHub - biojava/biojava at bugfixes-4.2
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonec1b02b4e3a8edff2fe0bd71b0551654be66034591c7ab65aaaaf61a6096862d3
turbo-cache-controlno-preview
go-importgithub.com/biojava/biojava git https://github.com/biojava/biojava.git
octolytics-dimension-user_id237402
octolytics-dimension-user_loginbiojava
octolytics-dimension-repository_id9199359
octolytics-dimension-repository_nwobiojava/biojava
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id9199359
octolytics-dimension-repository_network_root_nwobiojava/biojava
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release4a1073fcc34432ac33cec03885ff2d96920686de
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/biojava/biojava/tree/bugfixes-4.2#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava%2Ftree%2Fbugfixes-4.2
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava%2Ftree%2Fbugfixes-4.2
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Ffiles%2Fdisambiguate&source=header-repo&source_repo=biojava%2Fbiojava
Reloadhttps://github.com/biojava/biojava/tree/bugfixes-4.2
Reloadhttps://github.com/biojava/biojava/tree/bugfixes-4.2
Reloadhttps://github.com/biojava/biojava/tree/bugfixes-4.2
biojava https://github.com/biojava
biojavahttps://github.com/biojava/biojava
Notifications https://github.com/login?return_to=%2Fbiojava%2Fbiojava
Fork 395 https://github.com/login?return_to=%2Fbiojava%2Fbiojava
Star 623 https://github.com/login?return_to=%2Fbiojava%2Fbiojava
biojava.orghttps://biojava.org
LGPL-2.1 license https://github.com/biojava/biojava/blob/master/LICENSE
623 stars https://github.com/biojava/biojava/stargazers
395 forks https://github.com/biojava/biojava/forks
Branches https://github.com/biojava/biojava/branches
Tags https://github.com/biojava/biojava/tags
Activity https://github.com/biojava/biojava/activity
Star https://github.com/login?return_to=%2Fbiojava%2Fbiojava
Notifications https://github.com/login?return_to=%2Fbiojava%2Fbiojava
Code https://github.com/biojava/biojava/tree/bugfixes-4.2
Issues 67 https://github.com/biojava/biojava/issues
Pull requests 2 https://github.com/biojava/biojava/pulls
Actions https://github.com/biojava/biojava/actions
Security Uh oh! There was an error while loading. Please reload this page. https://github.com/biojava/biojava/security
Please reload this pagehttps://github.com/biojava/biojava/tree/bugfixes-4.2
Insights https://github.com/biojava/biojava/pulse
Code https://github.com/biojava/biojava/tree/bugfixes-4.2
Issues https://github.com/biojava/biojava/issues
Pull requests https://github.com/biojava/biojava/pulls
Actions https://github.com/biojava/biojava/actions
Security https://github.com/biojava/biojava/security
Insights https://github.com/biojava/biojava/pulse
Brancheshttps://github.com/biojava/biojava/branches
Tagshttps://github.com/biojava/biojava/tags
https://github.com/biojava/biojava/branches
https://github.com/biojava/biojava/tags
4,603 Commitshttps://github.com/biojava/biojava/commits/bugfixes-4.2/
https://github.com/biojava/biojava/commits/bugfixes-4.2/
biojava-aa-prophttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-aa-prop
biojava-aa-prophttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-aa-prop
biojava-alignmenthttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-alignment
biojava-alignmenthttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-alignment
biojava-corehttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-core
biojava-corehttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-core
biojava-genomehttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-genome
biojava-genomehttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-genome
biojava-integrationtesthttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-integrationtest
biojava-integrationtesthttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-integrationtest
biojava-modfinderhttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-modfinder
biojava-modfinderhttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-modfinder
biojava-ontologyhttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-ontology
biojava-ontologyhttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-ontology
biojava-phylohttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-phylo
biojava-phylohttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-phylo
biojava-protein-comparison-toolhttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-protein-comparison-tool
biojava-protein-comparison-toolhttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-protein-comparison-tool
biojava-protein-disorderhttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-protein-disorder
biojava-protein-disorderhttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-protein-disorder
biojava-sequencinghttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-sequencing
biojava-sequencinghttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-sequencing
biojava-structure-guihttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-structure-gui
biojava-structure-guihttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-structure-gui
biojava-structurehttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-structure
biojava-structurehttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-structure
biojava-survivalhttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-survival
biojava-survivalhttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-survival
biojava-wshttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-ws
biojava-wshttps://github.com/biojava/biojava/tree/bugfixes-4.2/biojava-ws
developmenthttps://github.com/biojava/biojava/tree/bugfixes-4.2/development
developmenthttps://github.com/biojava/biojava/tree/bugfixes-4.2/development
.gitignorehttps://github.com/biojava/biojava/blob/bugfixes-4.2/.gitignore
.gitignorehttps://github.com/biojava/biojava/blob/bugfixes-4.2/.gitignore
.travis.ymlhttps://github.com/biojava/biojava/blob/bugfixes-4.2/.travis.yml
.travis.ymlhttps://github.com/biojava/biojava/blob/bugfixes-4.2/.travis.yml
KEYShttps://github.com/biojava/biojava/blob/bugfixes-4.2/KEYS
KEYShttps://github.com/biojava/biojava/blob/bugfixes-4.2/KEYS
LICENSEhttps://github.com/biojava/biojava/blob/bugfixes-4.2/LICENSE
LICENSEhttps://github.com/biojava/biojava/blob/bugfixes-4.2/LICENSE
icon.pnghttps://github.com/biojava/biojava/blob/bugfixes-4.2/icon.png
icon.pnghttps://github.com/biojava/biojava/blob/bugfixes-4.2/icon.png
ignore.txthttps://github.com/biojava/biojava/blob/bugfixes-4.2/ignore.txt
ignore.txthttps://github.com/biojava/biojava/blob/bugfixes-4.2/ignore.txt
pom.xmlhttps://github.com/biojava/biojava/blob/bugfixes-4.2/pom.xml
pom.xmlhttps://github.com/biojava/biojava/blob/bugfixes-4.2/pom.xml
readme.mdhttps://github.com/biojava/biojava/blob/bugfixes-4.2/readme.md
readme.mdhttps://github.com/biojava/biojava/blob/bugfixes-4.2/readme.md
READMEhttps://github.com/biojava/biojava/tree/bugfixes-4.2
Licensehttps://github.com/biojava/biojava/tree/bugfixes-4.2
https://github.com/biojava/biojava/tree/bugfixes-4.2#welcome-to-biojava
https://travis-ci.org/biojava/biojava
http://www.versioneye.com/user/projects/53f8b9f0e09da3dcbb000394
http://biojava.org/wiki/BioJava:Download
https://github.com/biojava/biojava/blob/master/LICENSE
homepagehttp://www.biojava.org/
https://github.com/biojava/biojava/tree/bugfixes-4.2#documentation
BioJava Cookbookhttp://biojava.org/wiki/BioJava:CookBook
tutorialhttps://github.com/biojava/biojava3-tutorial
https://github.com/biojava/biojava/tree/bugfixes-4.2#maven-repository
Maven Repositoryhttp://biojava.org/download/maven/
https://github.com/biojava/biojava/tree/bugfixes-4.2#quick-installation
https://github.com/biojava/biojava/tree/bugfixes-4.2#snapshot-builds
https://github.com/biojava/biojava/tree/bugfixes-4.2#mailing-lists
https://github.com/biojava/biojava/tree/bugfixes-4.2#biojava-l-general-discussion-list
biojava-l@biojava.orghttp://lists.open-bio.org/mailman/listinfo/biojava-l
https://github.com/biojava/biojava/tree/bugfixes-4.2#biojava-dev-developers-list
biojava-dev@biojava.orghttp://lists.open-bio.org/mailman/listinfo/biojava-dev
https://github.com/biojava/biojava/tree/bugfixes-4.2#please-cite
Bioinformatics (2012) 28 (20): 2693-2695.http://bioinformatics.oxfordjournals.org/content/28/20/2693.abstract
http://bioinformatics.oxfordjournals.org/content/28/20/2693.abstract
https://www.ncbi.nlm.nih.gov/pubmed/22877863
biojava.orghttps://biojava.org
java https://github.com/topics/java
bioinformatics https://github.com/topics/bioinformatics
genomics https://github.com/topics/genomics
pdb https://github.com/topics/pdb
parser-library https://github.com/topics/parser-library
protein-data-bank https://github.com/topics/protein-data-bank
protein-structure https://github.com/topics/protein-structure
protein-sequences https://github.com/topics/protein-sequences
sequence-alignment https://github.com/topics/sequence-alignment
protein-modification https://github.com/topics/protein-modification
structure-alignment https://github.com/topics/structure-alignment
structural-bioinformatics https://github.com/topics/structural-bioinformatics
Readme https://github.com/biojava/biojava/tree/bugfixes-4.2#readme-ov-file
LGPL-2.1 license https://github.com/biojava/biojava/blob/master/LICENSE
Contributing https://github.com/biojava/biojava/tree/bugfixes-4.2#contributing-ov-file
Security policy https://github.com/biojava/biojava/tree/bugfixes-4.2#security-ov-file
Please reload this pagehttps://github.com/biojava/biojava/tree/bugfixes-4.2
Activityhttps://github.com/biojava/biojava/activity
Custom propertieshttps://github.com/biojava/biojava/custom-properties
623 starshttps://github.com/biojava/biojava/stargazers
76 watchinghttps://github.com/biojava/biojava/watchers
395 forkshttps://github.com/biojava/biojava/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava&report=biojava+%28user%29
Releases 42https://github.com/biojava/biojava/releases
BioJava 7.2.4 Latest Dec 10, 2025 https://github.com/biojava/biojava/releases/tag/biojava-7.2.4
+ 41 releaseshttps://github.com/biojava/biojava/releases
Packages 0https://github.com/orgs/biojava/packages?repo_name=biojava
Please reload this pagehttps://github.com/biojava/biojava/tree/bugfixes-4.2
Contributors 80https://github.com/biojava/biojava/graphs/contributors
Please reload this pagehttps://github.com/biojava/biojava/tree/bugfixes-4.2
+ 66 contributorshttps://github.com/biojava/biojava/graphs/contributors
Java 99.9% https://github.com/biojava/biojava/search?l=java
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.