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Title: More on lenient PDBx/mmCIF parsing by josemduarte · Pull Request #1106 · biojava/biojava · GitHub

Open Graph Title: More on lenient PDBx/mmCIF parsing by josemduarte · Pull Request #1106 · biojava/biojava

X Title: More on lenient PDBx/mmCIF parsing by josemduarte · Pull Request #1106 · biojava/biojava

Description: Following #1103 . This covers some fields that are missing in PDB-IHM entries.

Open Graph Description: Following #1103 . This covers some fields that are missing in PDB-IHM entries.

X Description: Following #1103 . This covers some fields that are missing in PDB-IHM entries.

Opengraph URL: https://github.com/biojava/biojava/pull/1106

X: @github

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Domain: github.com

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Handle more missing fields in struct_ref_seqhttps://github.com/biojava/biojava/pull/1106/commits/93c1c8f9d4c1fa3d12d2c7f7d250532ed6b62098
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Another safeguard, that applies to some PDB-IHM entrieshttps://github.com/biojava/biojava/pull/1106/commits/12dcb2ce3c1a03d67798311ca7cf6fd26e12563f
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