René's URL Explorer Experiment


Title: More lenient CIF parsing by josemduarte · Pull Request #1103 · biojava/biojava · GitHub

Open Graph Title: More lenient CIF parsing by josemduarte · Pull Request #1103 · biojava/biojava

X Title: More lenient CIF parsing by josemduarte · Pull Request #1103 · biojava/biojava

Description: mmCIF files generated by packages like Gemmi don't have all the fields that archived PDB files do. This makes the parser more lenient to some missing fields. See rcsb/rcsb-api-tools#8

Open Graph Description: mmCIF files generated by packages like Gemmi don't have all the fields that archived PDB files do. This makes the parser more lenient to some missing fields. See rcsb/rcsb-api-tools#8

X Description: mmCIF files generated by packages like Gemmi don't have all the fields that archived PDB files do. This makes the parser more lenient to some missing fields. See rcsb/rcsb-api-tools#8

Opengraph URL: https://github.com/biojava/biojava/pull/1103

X: @github

direct link

Domain: github.com

route-pattern/_view_fragments/voltron/pull_requests/show/:user_id/:repository/:id/pull_request_layout(.:format)
route-controllervoltron_pull_requests_fragments
route-actionpull_request_layout
fetch-noncev2:6dce576a-9da6-5740-8026-4828fb697aca
current-catalog-service-hashae870bc5e265a340912cde392f23dad3671a0a881730ffdadd82f2f57d81641b
request-idED66:3A671A:E2545A:1321412:69732B3B
html-safe-noncecabfde7a07e70fa782d9d36214f5142b9a652cd4ffb4ee9b3215a3214127d076
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJFRDY2OjNBNjcxQTpFMjU0NUE6MTMyMTQxMjo2OTczMkIzQiIsInZpc2l0b3JfaWQiOiIzMjkyMTU2Mzc3NjI2MjU4MjM1IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac15a0955107f4a876aeac3166ebfde10c353c25c4ef98d1aaa98788b77951b32c
hovercard-subject-tagpull_request:2262792734
github-keyboard-shortcutsrepository,pull-request-list,pull-request-conversation,pull-request-files-changed,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location///voltron/pull_requests_fragments/pull_request_layout
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/_view_fragments/voltron/pull_requests/show/biojava/biojava/1103/pull_request_layout
twitter:imagehttps://opengraph.githubassets.com/9f2e7de37a29d18f6bf3e1cad25722ae180926eb9c567e147340413c220621fc/biojava/biojava/pull/1103
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/9f2e7de37a29d18f6bf3e1cad25722ae180926eb9c567e147340413c220621fc/biojava/biojava/pull/1103
og:image:altmmCIF files generated by packages like Gemmi don't have all the fields that archived PDB files do. This makes the parser more lenient to some missing fields. See rcsb/rcsb-api-tools#8
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
og:author:usernamejosemduarte
hostnamegithub.com
expected-hostnamegithub.com
None44ab3188c1dcfe3be0f9c3feca2e04e14fb79f120939ce2395e4f15ab96ec1d4
turbo-cache-controlno-preview
go-importgithub.com/biojava/biojava git https://github.com/biojava/biojava.git
octolytics-dimension-user_id237402
octolytics-dimension-user_loginbiojava
octolytics-dimension-repository_id9199359
octolytics-dimension-repository_nwobiojava/biojava
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id9199359
octolytics-dimension-repository_network_root_nwobiojava/biojava
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasea5e2b48bd1260476599758f5d253b5d24092ab84
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/biojava/biojava/pull/1103#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava%2Fpull%2F1103
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava%2Fpull%2F1103
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Fvoltron%2Fpull_requests_fragments%2Fpull_request_layout&source=header-repo&source_repo=biojava%2Fbiojava
Reloadhttps://github.com/biojava/biojava/pull/1103
Reloadhttps://github.com/biojava/biojava/pull/1103
Reloadhttps://github.com/biojava/biojava/pull/1103
biojava https://github.com/biojava
biojavahttps://github.com/biojava/biojava
Notifications https://github.com/login?return_to=%2Fbiojava%2Fbiojava
Fork 395 https://github.com/login?return_to=%2Fbiojava%2Fbiojava
Star 623 https://github.com/login?return_to=%2Fbiojava%2Fbiojava
Code https://github.com/biojava/biojava
Issues 67 https://github.com/biojava/biojava/issues
Pull requests 2 https://github.com/biojava/biojava/pulls
Actions https://github.com/biojava/biojava/actions
Security 0 https://github.com/biojava/biojava/security
Insights https://github.com/biojava/biojava/pulse
Code https://github.com/biojava/biojava
Issues https://github.com/biojava/biojava/issues
Pull requests https://github.com/biojava/biojava/pulls
Actions https://github.com/biojava/biojava/actions
Security https://github.com/biojava/biojava/security
Insights https://github.com/biojava/biojava/pulse
Sign up for GitHub https://github.com/signup?return_to=%2Fbiojava%2Fbiojava%2Fissues%2Fnew%2Fchoose
terms of servicehttps://docs.github.com/terms
privacy statementhttps://docs.github.com/privacy
Sign inhttps://github.com/login?return_to=%2Fbiojava%2Fbiojava%2Fissues%2Fnew%2Fchoose
Jump to bottomhttps://github.com/biojava/biojava/pull/1103#issue-comment-box
josemduartehttps://github.com/josemduarte
biojava:masterhttps://github.com/biojava/biojava/tree/master
josemduarte:cifparser-gemmifilehttps://github.com/josemduarte/biojava/tree/cifparser-gemmifile
More lenient CIF parsing https://github.com/biojava/biojava/pull/1103#top
josemduartehttps://github.com/josemduarte
biojava:masterhttps://github.com/biojava/biojava/tree/master
josemduarte:cifparser-gemmifilehttps://github.com/josemduarte/biojava/tree/cifparser-gemmifile
Conversation 1 https://github.com/biojava/biojava/pull/1103
Commits 1 https://github.com/biojava/biojava/pull/1103/commits
Checks 5 https://github.com/biojava/biojava/pull/1103/checks
Files changed https://github.com/biojava/biojava/pull/1103/files
Please reload this pagehttps://github.com/biojava/biojava/pull/1103
https://github.co/hiddenchars
https://github.com/biojava/biojava/pull/{{ revealButtonHref }}
https://github.com/josemduarte
josemduartehttps://github.com/josemduarte
Jan 6, 2025https://github.com/biojava/biojava/pull/1103#issue-2771601996
rcsb/rcsb-api-tools#8https://github.com/rcsb/rcsb-api-tools/issues/8
Please reload this pagehttps://github.com/biojava/biojava/pull/1103
https://github.com/josemduarte
More lenient parsing if some fields are missing (e.g. in files output…https://github.com/biojava/biojava/pull/1103/commits/5a5052428c88669d7bb31a92dcd2718c3cbb9788
5a50524https://github.com/biojava/biojava/pull/1103/commits/5a5052428c88669d7bb31a92dcd2718c3cbb9788
https://github.com/josemduarte
josemduartehttps://github.com/josemduarte
sbittrichhttps://github.com/sbittrich
January 6, 2025 23:15https://github.com/biojava/biojava/pull/1103#event-15831860386
https://github.com/sbittrich
sbittrichhttps://github.com/sbittrich
Jan 7, 2025 https://github.com/biojava/biojava/pull/1103#pullrequestreview-2533725019
View reviewed changes https://github.com/biojava/biojava/pull/1103/files/5a5052428c88669d7bb31a92dcd2718c3cbb9788
sbittrichhttps://github.com/sbittrich
https://github.com/biojava/biojava/pull/1103#pullrequestreview-2533725019
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1103
https://github.com/josemduarte
josemduartehttps://github.com/josemduarte
f880d18https://github.com/biojava/biojava/commit/f880d18fcb7655adaff2845491e99d1ed8953b51
Jan 8, 2025https://github.com/biojava/biojava/pull/1103#event-15845562412
Please reload this pagehttps://github.com/biojava/biojava/pull/1103
https://github.com/josemduarte
josemduartehttps://github.com/josemduarte
Feb 21, 2025 https://github.com/biojava/biojava/pull/1103#ref-pullrequest-2869857879
More on lenient PDBx/mmCIF parsing #1106 https://github.com/biojava/biojava/pull/1106
Sign up for freehttps://github.com/join?source=comment-repo
Sign in to commenthttps://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava%2Fpull%2F1103
https://github.com/sbittrich
sbittrich https://github.com/sbittrich
https://github.com/biojava/biojava/pull/1103/files/5a5052428c88669d7bb31a92dcd2718c3cbb9788
Please reload this pagehttps://github.com/biojava/biojava/pull/1103
https://github.com/josemduarte
https://github.com/sbittrich
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.