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Title: More lenient mmCIF parsing by josemduarte · Pull Request #1083 · biojava/biojava · GitHub

Open Graph Title: More lenient mmCIF parsing by josemduarte · Pull Request #1083 · biojava/biojava

X Title: More lenient mmCIF parsing by josemduarte · Pull Request #1083 · biojava/biojava

Description: ESMAtlas files miss some of the atom_site fields, which was breaking their parsing. This makes parsing more lenient, not requiring these fields if not present.

Open Graph Description: ESMAtlas files miss some of the atom_site fields, which was breaking their parsing. This makes parsing more lenient, not requiring these fields if not present.

X Description: ESMAtlas files miss some of the atom_site fields, which was breaking their parsing. This makes parsing more lenient, not requiring these fields if not present.

Opengraph URL: https://github.com/biojava/biojava/pull/1083

X: @github

direct link

Domain: github.com

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Be more lenient with some missing atom_site fieldshttps://github.com/biojava/biojava/pull/1083/commits/805a9023b78a4f5033bccb80a43c5529d389c8e0
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