René's URL Explorer Experiment


Title: Added Java Streaming I/O for FASTA Files by hilbertglm · Pull Request #1080 · biojava/biojava · GitHub

Open Graph Title: Added Java Streaming I/O for FASTA Files by hilbertglm · Pull Request #1080 · biojava/biojava

X Title: Added Java Streaming I/O for FASTA Files by hilbertglm · Pull Request #1080 · biojava/biojava

Description: Added a class to use Java streams to process FASTA files.

Open Graph Description: Added a class to use Java streams to process FASTA files.

X Description: Added a class to use Java streams to process FASTA files.

Opengraph URL: https://github.com/biojava/biojava/pull/1080

X: @github

direct link

Domain: github.com

route-pattern/_view_fragments/voltron/pull_requests/show/:user_id/:repository/:id/pull_request_layout(.:format)
route-controllervoltron_pull_requests_fragments
route-actionpull_request_layout
fetch-noncev2:fdcd7ebe-93ef-d1bf-80d9-2e5d9c333ab6
current-catalog-service-hashae870bc5e265a340912cde392f23dad3671a0a881730ffdadd82f2f57d81641b
request-idAEC6:178A47:2C4E5C:3CEC53:697374A5
html-safe-nonce1c551007dc9aa012d038f0eeb234c4271c36d49f69bba95b10de9b8b08845a35
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJBRUM2OjE3OEE0NzoyQzRFNUM6M0NFQzUzOjY5NzM3NEE1IiwidmlzaXRvcl9pZCI6Ijg2MTk2MTAyNTY3MjY3MjQyMSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmaca2671836d3c8376d764c3922edebb16aaea1500afa0a692827055cce18b9cbc9
hovercard-subject-tagpull_request:1684956403
github-keyboard-shortcutsrepository,pull-request-list,pull-request-conversation,pull-request-files-changed,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location///voltron/pull_requests_fragments/pull_request_layout
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/_view_fragments/voltron/pull_requests/show/biojava/biojava/1080/pull_request_layout
twitter:imagehttps://opengraph.githubassets.com/e5010430cac35c8eb40023363a340d9bebd2064b29b7d607775c2b6dfbb40ba5/biojava/biojava/pull/1080
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/e5010430cac35c8eb40023363a340d9bebd2064b29b7d607775c2b6dfbb40ba5/biojava/biojava/pull/1080
og:image:altAdded a class to use Java streams to process FASTA files.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
og:author:usernamehilbertglm
hostnamegithub.com
expected-hostnamegithub.com
None4cf879a11b0a28a85543899a36aaee9ec9ca2fb7bedad86c0da5731193c95f01
turbo-cache-controlno-preview
go-importgithub.com/biojava/biojava git https://github.com/biojava/biojava.git
octolytics-dimension-user_id237402
octolytics-dimension-user_loginbiojava
octolytics-dimension-repository_id9199359
octolytics-dimension-repository_nwobiojava/biojava
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id9199359
octolytics-dimension-repository_network_root_nwobiojava/biojava
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasefe8be790582ef7a55477ce1918ac0ed16b106d31
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/biojava/biojava/pull/1080#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava%2Fpull%2F1080
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava%2Fpull%2F1080
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Fvoltron%2Fpull_requests_fragments%2Fpull_request_layout&source=header-repo&source_repo=biojava%2Fbiojava
Reloadhttps://github.com/biojava/biojava/pull/1080
Reloadhttps://github.com/biojava/biojava/pull/1080
Reloadhttps://github.com/biojava/biojava/pull/1080
biojava https://github.com/biojava
biojavahttps://github.com/biojava/biojava
Notifications https://github.com/login?return_to=%2Fbiojava%2Fbiojava
Fork 395 https://github.com/login?return_to=%2Fbiojava%2Fbiojava
Star 623 https://github.com/login?return_to=%2Fbiojava%2Fbiojava
Code https://github.com/biojava/biojava
Issues 67 https://github.com/biojava/biojava/issues
Pull requests 2 https://github.com/biojava/biojava/pulls
Actions https://github.com/biojava/biojava/actions
Security 0 https://github.com/biojava/biojava/security
Insights https://github.com/biojava/biojava/pulse
Code https://github.com/biojava/biojava
Issues https://github.com/biojava/biojava/issues
Pull requests https://github.com/biojava/biojava/pulls
Actions https://github.com/biojava/biojava/actions
Security https://github.com/biojava/biojava/security
Insights https://github.com/biojava/biojava/pulse
Sign up for GitHub https://github.com/signup?return_to=%2Fbiojava%2Fbiojava%2Fissues%2Fnew%2Fchoose
terms of servicehttps://docs.github.com/terms
privacy statementhttps://docs.github.com/privacy
Sign inhttps://github.com/login?return_to=%2Fbiojava%2Fbiojava%2Fissues%2Fnew%2Fchoose
Jump to bottomhttps://github.com/biojava/biojava/pull/1080#issue-comment-box
josemduartehttps://github.com/josemduarte
biojava:masterhttps://github.com/biojava/biojava/tree/master
hilbertglm:20240113-streaminghttps://github.com/hilbertglm/biojava/tree/20240113-streaming
Added Java Streaming I/O for FASTA Files https://github.com/biojava/biojava/pull/1080#top
josemduartehttps://github.com/josemduarte
biojava:masterhttps://github.com/biojava/biojava/tree/master
hilbertglm:20240113-streaminghttps://github.com/hilbertglm/biojava/tree/20240113-streaming
Conversation 18 https://github.com/biojava/biojava/pull/1080
Commits 8 https://github.com/biojava/biojava/pull/1080/commits
Checks 0 https://github.com/biojava/biojava/pull/1080/checks
Files changed https://github.com/biojava/biojava/pull/1080/files
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
https://github.co/hiddenchars
https://github.com/biojava/biojava/pull/{{ revealButtonHref }}
https://github.com/hilbertglm
hilbertglmhttps://github.com/hilbertglm
Jan 18, 2024https://github.com/biojava/biojava/pull/1080#issue-2088405765
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
hilbertglmhttps://github.com/hilbertglm
January 8, 2024 12:04https://github.com/biojava/biojava/pull/1080#commits-pushed-f45e018
https://github.com/hilbertglm
Changed the URLs to the mirrors from http to https. Changed the name …https://github.com/biojava/biojava/pull/1080/commits/f45e01876a1179983d96b9fde840614a0adf5915
f45e018https://github.com/biojava/biojava/pull/1080/commits/f45e01876a1179983d96b9fde840614a0adf5915
https://github.com/hilbertglm
Before finding the InputStreamProviderhttps://github.com/biojava/biojava/pull/1080/commits/96c81269b33a2e2c2ac0b09c055a81ccfb5c5303
96c8126https://github.com/biojava/biojava/pull/1080/commits/96c81269b33a2e2c2ac0b09c055a81ccfb5c5303
https://github.com/hilbertglm
Removed the MagicNumber class after finding InputStreamProviderhttps://github.com/biojava/biojava/pull/1080/commits/fd3be7e9f1e3c177fbef509bfd3e795bf8969de8
fd3be7ehttps://github.com/biojava/biojava/pull/1080/commits/fd3be7e9f1e3c177fbef509bfd3e795bf8969de8
https://github.com/hilbertglm
Added commentshttps://github.com/biojava/biojava/pull/1080/commits/ef665e26ce560ac2c14af46535e250f61336d84b
ef665e2https://github.com/biojava/biojava/pull/1080/commits/ef665e26ce560ac2c14af46535e250f61336d84b
https://github.com/hilbertglm
Added access to the iterablehttps://github.com/biojava/biojava/pull/1080/commits/26b21d7c4c47f6020fa0a6950778b1046e301336
26b21d7https://github.com/biojava/biojava/pull/1080/commits/26b21d7c4c47f6020fa0a6950778b1046e301336
https://github.com/josemduarte
josemduartehttps://github.com/josemduarte
Jan 25, 2024 https://github.com/biojava/biojava/pull/1080#pullrequestreview-1842846539
View reviewed changes https://github.com/biojava/biojava/pull/1080/files/26b21d7c4c47f6020fa0a6950778b1046e301336
josemduartehttps://github.com/josemduarte
https://github.com/biojava/biojava/pull/1080#pullrequestreview-1842846539
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/FastaStreamer.javahttps://github.com/biojava/biojava/pull/1080/files/26b21d7c4c47f6020fa0a6950778b1046e301336#diff-7a6881cc873522aee93084b1440031fdfe714288c148381006ffaf1654e28346
josemduartehttps://github.com/josemduarte
Jan 25, 2024https://github.com/biojava/biojava/pull/1080#discussion_r1465845845
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
josemduartehttps://github.com/josemduarte
Jan 25, 2024https://github.com/biojava/biojava/pull/1080#discussion_r1465851861
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
hilbertglmhttps://github.com/hilbertglm
Jan 26, 2024https://github.com/biojava/biojava/pull/1080#discussion_r1467615698
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/FastaStreamer.javahttps://github.com/biojava/biojava/pull/1080/files/26b21d7c4c47f6020fa0a6950778b1046e301336#diff-7a6881cc873522aee93084b1440031fdfe714288c148381006ffaf1654e28346
josemduartehttps://github.com/josemduarte
Jan 25, 2024https://github.com/biojava/biojava/pull/1080#discussion_r1465848966
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
hilbertglmhttps://github.com/hilbertglm
Jan 26, 2024https://github.com/biojava/biojava/pull/1080#discussion_r1467638638
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/FastaStreamer.javahttps://github.com/biojava/biojava/pull/1080/files/26b21d7c4c47f6020fa0a6950778b1046e301336#diff-7a6881cc873522aee93084b1440031fdfe714288c148381006ffaf1654e28346
josemduartehttps://github.com/josemduarte
Jan 25, 2024https://github.com/biojava/biojava/pull/1080#discussion_r1465849712
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
hilbertglmhttps://github.com/hilbertglm
Jan 26, 2024https://github.com/biojava/biojava/pull/1080#discussion_r1467640221
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
biojava-structure/src/main/java/org/biojava/nbio/structure/scop/ScopInstallation.javahttps://github.com/biojava/biojava/pull/1080/files/26b21d7c4c47f6020fa0a6950778b1046e301336#diff-7e7002dae5faf79b4d72f5644c422c8c78734da1d7163faefc42483cd2c04c26
josemduartehttps://github.com/josemduarte
Jan 25, 2024https://github.com/biojava/biojava/pull/1080#discussion_r1465852853
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
#1077https://github.com/biojava/biojava/pull/1077
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
hilbertglmhttps://github.com/hilbertglm
Jan 26, 2024https://github.com/biojava/biojava/pull/1080#discussion_r1467640317
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/FastaStreamer.javahttps://github.com/biojava/biojava/pull/1080/files/26b21d7c4c47f6020fa0a6950778b1046e301336#diff-7a6881cc873522aee93084b1440031fdfe714288c148381006ffaf1654e28346
josemduartehttps://github.com/josemduarte
Jan 25, 2024https://github.com/biojava/biojava/pull/1080#discussion_r1465855260
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
hilbertglmhttps://github.com/hilbertglm
Jan 26, 2024https://github.com/biojava/biojava/pull/1080#discussion_r1467640684
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
hilbertglmhttps://github.com/hilbertglm
January 26, 2024 07:14https://github.com/biojava/biojava/pull/1080#commits-pushed-d081b12
https://github.com/hilbertglm
Changed the version to 7.1.0-SNAPSHOT. Made changes per review.https://github.com/biojava/biojava/pull/1080/commits/d081b125792b8d07c4eb37f3dfc8d4575aef2335
d081b12https://github.com/biojava/biojava/pull/1080/commits/d081b125792b8d07c4eb37f3dfc8d4575aef2335
https://github.com/hilbertglm
Missed a RuntimeException. Changed to UncheckedIOExceptionhttps://github.com/biojava/biojava/pull/1080/commits/2d1f32ea7a04ca92ca6b26a2e1381d0d44e61a01
2d1f32ehttps://github.com/biojava/biojava/pull/1080/commits/2d1f32ea7a04ca92ca6b26a2e1381d0d44e61a01
https://github.com/hilbertglm
hilbertglmhttps://github.com/hilbertglm
Jan 26, 2024https://github.com/biojava/biojava/pull/1080#issuecomment-1912060626
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
https://github.com/josemduarte
josemduartehttps://github.com/josemduarte
Jan 26, 2024https://github.com/biojava/biojava/pull/1080#issuecomment-1912443847
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
https://github.com/josemduarte
josemduartehttps://github.com/josemduarte
Jan 26, 2024 https://github.com/biojava/biojava/pull/1080#pullrequestreview-1846229283
View reviewed changes https://github.com/biojava/biojava/pull/1080/files/2d1f32ea7a04ca92ca6b26a2e1381d0d44e61a01
josemduartehttps://github.com/josemduarte
https://github.com/biojava/biojava/pull/1080#pullrequestreview-1846229283
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
https://github.com/hilbertglm
Added an entry to the changelog for FastaStreamerhttps://github.com/biojava/biojava/pull/1080/commits/84998b92ab0ba0b57a378d47d93e1451d5827d2e
84998b9https://github.com/biojava/biojava/pull/1080/commits/84998b92ab0ba0b57a378d47d93e1451d5827d2e
https://github.com/heuermh
heuermhhttps://github.com/heuermh
Jan 30, 2024https://github.com/biojava/biojava/pull/1080#issuecomment-1917046302
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
https://github.com/josemduarte
josemduartehttps://github.com/josemduarte
Jan 30, 2024 https://github.com/biojava/biojava/pull/1080#pullrequestreview-1851966303
View reviewed changes https://github.com/biojava/biojava/pull/1080/files/84998b92ab0ba0b57a378d47d93e1451d5827d2e
josemduartehttps://github.com/josemduarte
https://github.com/biojava/biojava/pull/1080#pullrequestreview-1851966303
Learn morehttps://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
https://github.com/hilbertglm
hilbertglmhttps://github.com/hilbertglm
Jan 31, 2024https://github.com/biojava/biojava/pull/1080#issuecomment-1919222148
@heuermhhttps://github.com/heuermh
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
https://github.com/josemduarte
josemduartehttps://github.com/josemduarte
c672d01https://github.com/biojava/biojava/commit/c672d013a45c5ea7f4e47902528c3434c037fb3e
Feb 23, 2024https://github.com/biojava/biojava/pull/1080#event-11907290381
https://github.com/josemduarte
josemduartehttps://github.com/josemduarte
Apr 18, 2024 https://github.com/biojava/biojava/pull/1080#ref-issue-2251220993
Biojava core tests fail on Windows #1092 https://github.com/biojava/biojava/issues/1092
Sign up for freehttps://github.com/join?source=comment-repo
Sign in to commenthttps://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava%2Fpull%2F1080
https://github.com/josemduarte
josemduarte https://github.com/josemduarte
https://github.com/biojava/biojava/pull/1080/files/84998b92ab0ba0b57a378d47d93e1451d5827d2e
Please reload this pagehttps://github.com/biojava/biojava/pull/1080
https://github.com/hilbertglm
https://github.com/josemduarte
https://github.com/heuermh
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.