| route-pattern | /_view_fragments/voltron/pull_requests/show/:user_id/:repository/:id/pull_request_layout(.:format) |
| route-controller | voltron_pull_requests_fragments |
| route-action | pull_request_layout |
| fetch-nonce | v2:fdcd7ebe-93ef-d1bf-80d9-2e5d9c333ab6 |
| current-catalog-service-hash | ae870bc5e265a340912cde392f23dad3671a0a881730ffdadd82f2f57d81641b |
| request-id | AEC6:178A47:2C4E5C:3CEC53:697374A5 |
| html-safe-nonce | 1c551007dc9aa012d038f0eeb234c4271c36d49f69bba95b10de9b8b08845a35 |
| visitor-payload | eyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJBRUM2OjE3OEE0NzoyQzRFNUM6M0NFQzUzOjY5NzM3NEE1IiwidmlzaXRvcl9pZCI6Ijg2MTk2MTAyNTY3MjY3MjQyMSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9 |
| visitor-hmac | a2671836d3c8376d764c3922edebb16aaea1500afa0a692827055cce18b9cbc9 |
| hovercard-subject-tag | pull_request:1684956403 |
| github-keyboard-shortcuts | repository,pull-request-list,pull-request-conversation,pull-request-files-changed,copilot |
| google-site-verification | Apib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I |
| octolytics-url | https://collector.github.com/github/collect |
| analytics-location | ///voltron/pull_requests_fragments/pull_request_layout |
| fb:app_id | 1401488693436528 |
| apple-itunes-app | app-id=1477376905, app-argument=https://github.com/_view_fragments/voltron/pull_requests/show/biojava/biojava/1080/pull_request_layout |
| twitter:image | https://opengraph.githubassets.com/e5010430cac35c8eb40023363a340d9bebd2064b29b7d607775c2b6dfbb40ba5/biojava/biojava/pull/1080 |
| twitter:card | summary_large_image |
| og:image | https://opengraph.githubassets.com/e5010430cac35c8eb40023363a340d9bebd2064b29b7d607775c2b6dfbb40ba5/biojava/biojava/pull/1080 |
| og:image:alt | Added a class to use Java streams to process FASTA files. |
| og:image:width | 1200 |
| og:image:height | 600 |
| og:site_name | GitHub |
| og:type | object |
| og:author:username | hilbertglm |
| hostname | github.com |
| expected-hostname | github.com |
| None | 4cf879a11b0a28a85543899a36aaee9ec9ca2fb7bedad86c0da5731193c95f01 |
| turbo-cache-control | no-preview |
| go-import | github.com/biojava/biojava git https://github.com/biojava/biojava.git |
| octolytics-dimension-user_id | 237402 |
| octolytics-dimension-user_login | biojava |
| octolytics-dimension-repository_id | 9199359 |
| octolytics-dimension-repository_nwo | biojava/biojava |
| octolytics-dimension-repository_public | true |
| octolytics-dimension-repository_is_fork | false |
| octolytics-dimension-repository_network_root_id | 9199359 |
| octolytics-dimension-repository_network_root_nwo | biojava/biojava |
| turbo-body-classes | logged-out env-production page-responsive |
| disable-turbo | false |
| browser-stats-url | https://api.github.com/_private/browser/stats |
| browser-errors-url | https://api.github.com/_private/browser/errors |
| release | fe8be790582ef7a55477ce1918ac0ed16b106d31 |
| ui-target | full |
| theme-color | #1e2327 |
| color-scheme | light dark |
| Skip to content | https://github.com/biojava/biojava/pull/1080#start-of-content |
|
| https://github.com/ |
|
Sign in
| https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava%2Fpull%2F1080 |
| GitHub CopilotWrite better code with AI | https://github.com/features/copilot |
| GitHub SparkBuild and deploy intelligent apps | https://github.com/features/spark |
| GitHub ModelsManage and compare prompts | https://github.com/features/models |
| MCP RegistryNewIntegrate external tools | https://github.com/mcp |
| ActionsAutomate any workflow | https://github.com/features/actions |
| CodespacesInstant dev environments | https://github.com/features/codespaces |
| IssuesPlan and track work | https://github.com/features/issues |
| Code ReviewManage code changes | https://github.com/features/code-review |
| GitHub Advanced SecurityFind and fix vulnerabilities | https://github.com/security/advanced-security |
| Code securitySecure your code as you build | https://github.com/security/advanced-security/code-security |
| Secret protectionStop leaks before they start | https://github.com/security/advanced-security/secret-protection |
| Why GitHub | https://github.com/why-github |
| Documentation | https://docs.github.com |
| Blog | https://github.blog |
| Changelog | https://github.blog/changelog |
| Marketplace | https://github.com/marketplace |
| View all features | https://github.com/features |
| Enterprises | https://github.com/enterprise |
| Small and medium teams | https://github.com/team |
| Startups | https://github.com/enterprise/startups |
| Nonprofits | https://github.com/solutions/industry/nonprofits |
| App Modernization | https://github.com/solutions/use-case/app-modernization |
| DevSecOps | https://github.com/solutions/use-case/devsecops |
| DevOps | https://github.com/solutions/use-case/devops |
| CI/CD | https://github.com/solutions/use-case/ci-cd |
| View all use cases | https://github.com/solutions/use-case |
| Healthcare | https://github.com/solutions/industry/healthcare |
| Financial services | https://github.com/solutions/industry/financial-services |
| Manufacturing | https://github.com/solutions/industry/manufacturing |
| Government | https://github.com/solutions/industry/government |
| View all industries | https://github.com/solutions/industry |
| View all solutions | https://github.com/solutions |
| AI | https://github.com/resources/articles?topic=ai |
| Software Development | https://github.com/resources/articles?topic=software-development |
| DevOps | https://github.com/resources/articles?topic=devops |
| Security | https://github.com/resources/articles?topic=security |
| View all topics | https://github.com/resources/articles |
| Customer stories | https://github.com/customer-stories |
| Events & webinars | https://github.com/resources/events |
| Ebooks & reports | https://github.com/resources/whitepapers |
| Business insights | https://github.com/solutions/executive-insights |
| GitHub Skills | https://skills.github.com |
| Documentation | https://docs.github.com |
| Customer support | https://support.github.com |
| Community forum | https://github.com/orgs/community/discussions |
| Trust center | https://github.com/trust-center |
| Partners | https://github.com/partners |
| GitHub SponsorsFund open source developers | https://github.com/sponsors |
| Security Lab | https://securitylab.github.com |
| Maintainer Community | https://maintainers.github.com |
| Accelerator | https://github.com/accelerator |
| Archive Program | https://archiveprogram.github.com |
| Topics | https://github.com/topics |
| Trending | https://github.com/trending |
| Collections | https://github.com/collections |
| Enterprise platformAI-powered developer platform | https://github.com/enterprise |
| GitHub Advanced SecurityEnterprise-grade security features | https://github.com/security/advanced-security |
| Copilot for BusinessEnterprise-grade AI features | https://github.com/features/copilot/copilot-business |
| Premium SupportEnterprise-grade 24/7 support | https://github.com/premium-support |
| Pricing | https://github.com/pricing |
| Search syntax tips | https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax |
| documentation | https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax |
|
Sign in
| https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava%2Fpull%2F1080 |
|
Sign up
| https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Fvoltron%2Fpull_requests_fragments%2Fpull_request_layout&source=header-repo&source_repo=biojava%2Fbiojava |
| Reload | https://github.com/biojava/biojava/pull/1080 |
| Reload | https://github.com/biojava/biojava/pull/1080 |
| Reload | https://github.com/biojava/biojava/pull/1080 |
|
biojava
| https://github.com/biojava |
| biojava | https://github.com/biojava/biojava |
|
Notifications
| https://github.com/login?return_to=%2Fbiojava%2Fbiojava |
|
Fork
395
| https://github.com/login?return_to=%2Fbiojava%2Fbiojava |
|
Star
623
| https://github.com/login?return_to=%2Fbiojava%2Fbiojava |
|
Code
| https://github.com/biojava/biojava |
|
Issues
67
| https://github.com/biojava/biojava/issues |
|
Pull requests
2
| https://github.com/biojava/biojava/pulls |
|
Actions
| https://github.com/biojava/biojava/actions |
|
Security
0
| https://github.com/biojava/biojava/security |
|
Insights
| https://github.com/biojava/biojava/pulse |
|
Code
| https://github.com/biojava/biojava |
|
Issues
| https://github.com/biojava/biojava/issues |
|
Pull requests
| https://github.com/biojava/biojava/pulls |
|
Actions
| https://github.com/biojava/biojava/actions |
|
Security
| https://github.com/biojava/biojava/security |
|
Insights
| https://github.com/biojava/biojava/pulse |
| Sign up for GitHub
| https://github.com/signup?return_to=%2Fbiojava%2Fbiojava%2Fissues%2Fnew%2Fchoose |
| terms of service | https://docs.github.com/terms |
| privacy statement | https://docs.github.com/privacy |
| Sign in | https://github.com/login?return_to=%2Fbiojava%2Fbiojava%2Fissues%2Fnew%2Fchoose |
| Jump to bottom | https://github.com/biojava/biojava/pull/1080#issue-comment-box |
| josemduarte | https://github.com/josemduarte |
| biojava:master | https://github.com/biojava/biojava/tree/master |
| hilbertglm:20240113-streaming | https://github.com/hilbertglm/biojava/tree/20240113-streaming |
|
Added Java Streaming I/O for FASTA Files
| https://github.com/biojava/biojava/pull/1080#top |
| josemduarte | https://github.com/josemduarte |
| biojava:master | https://github.com/biojava/biojava/tree/master |
| hilbertglm:20240113-streaming | https://github.com/hilbertglm/biojava/tree/20240113-streaming |
|
Conversation
18
| https://github.com/biojava/biojava/pull/1080 |
|
Commits
8
| https://github.com/biojava/biojava/pull/1080/commits |
|
Checks
0
| https://github.com/biojava/biojava/pull/1080/checks |
|
Files changed
| https://github.com/biojava/biojava/pull/1080/files |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| https://github.co/hiddenchars |
| https://github.com/biojava/biojava/pull/{{ revealButtonHref }} |
|
| https://github.com/hilbertglm |
| hilbertglm | https://github.com/hilbertglm |
| Jan 18, 2024 | https://github.com/biojava/biojava/pull/1080#issue-2088405765 |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| hilbertglm | https://github.com/hilbertglm |
| January 8, 2024 12:04 | https://github.com/biojava/biojava/pull/1080#commits-pushed-f45e018 |
|
| https://github.com/hilbertglm |
| Changed the URLs to the mirrors from http to https. Changed the name … | https://github.com/biojava/biojava/pull/1080/commits/f45e01876a1179983d96b9fde840614a0adf5915 |
| f45e018 | https://github.com/biojava/biojava/pull/1080/commits/f45e01876a1179983d96b9fde840614a0adf5915 |
|
| https://github.com/hilbertglm |
| Before finding the InputStreamProvider | https://github.com/biojava/biojava/pull/1080/commits/96c81269b33a2e2c2ac0b09c055a81ccfb5c5303 |
| 96c8126 | https://github.com/biojava/biojava/pull/1080/commits/96c81269b33a2e2c2ac0b09c055a81ccfb5c5303 |
|
| https://github.com/hilbertglm |
| Removed the MagicNumber class after finding InputStreamProvider | https://github.com/biojava/biojava/pull/1080/commits/fd3be7e9f1e3c177fbef509bfd3e795bf8969de8 |
| fd3be7e | https://github.com/biojava/biojava/pull/1080/commits/fd3be7e9f1e3c177fbef509bfd3e795bf8969de8 |
|
| https://github.com/hilbertglm |
| Added comments | https://github.com/biojava/biojava/pull/1080/commits/ef665e26ce560ac2c14af46535e250f61336d84b |
| ef665e2 | https://github.com/biojava/biojava/pull/1080/commits/ef665e26ce560ac2c14af46535e250f61336d84b |
|
| https://github.com/hilbertglm |
| Added access to the iterable | https://github.com/biojava/biojava/pull/1080/commits/26b21d7c4c47f6020fa0a6950778b1046e301336 |
| 26b21d7 | https://github.com/biojava/biojava/pull/1080/commits/26b21d7c4c47f6020fa0a6950778b1046e301336 |
| https://github.com/josemduarte |
| josemduarte | https://github.com/josemduarte |
|
Jan 25, 2024
| https://github.com/biojava/biojava/pull/1080#pullrequestreview-1842846539 |
|
View reviewed changes
| https://github.com/biojava/biojava/pull/1080/files/26b21d7c4c47f6020fa0a6950778b1046e301336 |
| josemduarte | https://github.com/josemduarte |
| https://github.com/biojava/biojava/pull/1080#pullrequestreview-1842846539 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/FastaStreamer.java | https://github.com/biojava/biojava/pull/1080/files/26b21d7c4c47f6020fa0a6950778b1046e301336#diff-7a6881cc873522aee93084b1440031fdfe714288c148381006ffaf1654e28346 |
| josemduarte | https://github.com/josemduarte |
| Jan 25, 2024 | https://github.com/biojava/biojava/pull/1080#discussion_r1465845845 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| josemduarte | https://github.com/josemduarte |
| Jan 25, 2024 | https://github.com/biojava/biojava/pull/1080#discussion_r1465851861 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| hilbertglm | https://github.com/hilbertglm |
| Jan 26, 2024 | https://github.com/biojava/biojava/pull/1080#discussion_r1467615698 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/FastaStreamer.java | https://github.com/biojava/biojava/pull/1080/files/26b21d7c4c47f6020fa0a6950778b1046e301336#diff-7a6881cc873522aee93084b1440031fdfe714288c148381006ffaf1654e28346 |
| josemduarte | https://github.com/josemduarte |
| Jan 25, 2024 | https://github.com/biojava/biojava/pull/1080#discussion_r1465848966 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| hilbertglm | https://github.com/hilbertglm |
| Jan 26, 2024 | https://github.com/biojava/biojava/pull/1080#discussion_r1467638638 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/FastaStreamer.java | https://github.com/biojava/biojava/pull/1080/files/26b21d7c4c47f6020fa0a6950778b1046e301336#diff-7a6881cc873522aee93084b1440031fdfe714288c148381006ffaf1654e28346 |
| josemduarte | https://github.com/josemduarte |
| Jan 25, 2024 | https://github.com/biojava/biojava/pull/1080#discussion_r1465849712 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| hilbertglm | https://github.com/hilbertglm |
| Jan 26, 2024 | https://github.com/biojava/biojava/pull/1080#discussion_r1467640221 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| biojava-structure/src/main/java/org/biojava/nbio/structure/scop/ScopInstallation.java | https://github.com/biojava/biojava/pull/1080/files/26b21d7c4c47f6020fa0a6950778b1046e301336#diff-7e7002dae5faf79b4d72f5644c422c8c78734da1d7163faefc42483cd2c04c26 |
| josemduarte | https://github.com/josemduarte |
| Jan 25, 2024 | https://github.com/biojava/biojava/pull/1080#discussion_r1465852853 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| #1077 | https://github.com/biojava/biojava/pull/1077 |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| hilbertglm | https://github.com/hilbertglm |
| Jan 26, 2024 | https://github.com/biojava/biojava/pull/1080#discussion_r1467640317 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| biojava-core/src/main/java/org/biojava/nbio/core/sequence/io/FastaStreamer.java | https://github.com/biojava/biojava/pull/1080/files/26b21d7c4c47f6020fa0a6950778b1046e301336#diff-7a6881cc873522aee93084b1440031fdfe714288c148381006ffaf1654e28346 |
| josemduarte | https://github.com/josemduarte |
| Jan 25, 2024 | https://github.com/biojava/biojava/pull/1080#discussion_r1465855260 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| hilbertglm | https://github.com/hilbertglm |
| Jan 26, 2024 | https://github.com/biojava/biojava/pull/1080#discussion_r1467640684 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| hilbertglm | https://github.com/hilbertglm |
| January 26, 2024 07:14 | https://github.com/biojava/biojava/pull/1080#commits-pushed-d081b12 |
|
| https://github.com/hilbertglm |
| Changed the version to 7.1.0-SNAPSHOT. Made changes per review. | https://github.com/biojava/biojava/pull/1080/commits/d081b125792b8d07c4eb37f3dfc8d4575aef2335 |
| d081b12 | https://github.com/biojava/biojava/pull/1080/commits/d081b125792b8d07c4eb37f3dfc8d4575aef2335 |
|
| https://github.com/hilbertglm |
| Missed a RuntimeException. Changed to UncheckedIOException | https://github.com/biojava/biojava/pull/1080/commits/2d1f32ea7a04ca92ca6b26a2e1381d0d44e61a01 |
| 2d1f32e | https://github.com/biojava/biojava/pull/1080/commits/2d1f32ea7a04ca92ca6b26a2e1381d0d44e61a01 |
| https://github.com/hilbertglm |
| hilbertglm | https://github.com/hilbertglm |
| Jan 26, 2024 | https://github.com/biojava/biojava/pull/1080#issuecomment-1912060626 |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| https://github.com/josemduarte |
| josemduarte | https://github.com/josemduarte |
| Jan 26, 2024 | https://github.com/biojava/biojava/pull/1080#issuecomment-1912443847 |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| https://github.com/josemduarte |
| josemduarte | https://github.com/josemduarte |
|
Jan 26, 2024
| https://github.com/biojava/biojava/pull/1080#pullrequestreview-1846229283 |
|
View reviewed changes
| https://github.com/biojava/biojava/pull/1080/files/2d1f32ea7a04ca92ca6b26a2e1381d0d44e61a01 |
| josemduarte | https://github.com/josemduarte |
| https://github.com/biojava/biojava/pull/1080#pullrequestreview-1846229283 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
|
| https://github.com/hilbertglm |
| Added an entry to the changelog for FastaStreamer | https://github.com/biojava/biojava/pull/1080/commits/84998b92ab0ba0b57a378d47d93e1451d5827d2e |
| 84998b9 | https://github.com/biojava/biojava/pull/1080/commits/84998b92ab0ba0b57a378d47d93e1451d5827d2e |
| https://github.com/heuermh |
| heuermh | https://github.com/heuermh |
| Jan 30, 2024 | https://github.com/biojava/biojava/pull/1080#issuecomment-1917046302 |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| https://github.com/josemduarte |
| josemduarte | https://github.com/josemduarte |
|
Jan 30, 2024
| https://github.com/biojava/biojava/pull/1080#pullrequestreview-1851966303 |
|
View reviewed changes
| https://github.com/biojava/biojava/pull/1080/files/84998b92ab0ba0b57a378d47d93e1451d5827d2e |
| josemduarte | https://github.com/josemduarte |
| https://github.com/biojava/biojava/pull/1080#pullrequestreview-1851966303 |
| Learn more | https://docs.github.com/articles/managing-disruptive-comments/#hiding-a-comment |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| https://github.com/hilbertglm |
| hilbertglm | https://github.com/hilbertglm |
| Jan 31, 2024 | https://github.com/biojava/biojava/pull/1080#issuecomment-1919222148 |
| @heuermh | https://github.com/heuermh |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
| https://github.com/josemduarte |
| josemduarte | https://github.com/josemduarte |
| c672d01 | https://github.com/biojava/biojava/commit/c672d013a45c5ea7f4e47902528c3434c037fb3e |
| Feb 23, 2024 | https://github.com/biojava/biojava/pull/1080#event-11907290381 |
| https://github.com/josemduarte |
| josemduarte | https://github.com/josemduarte |
|
Apr 18, 2024
| https://github.com/biojava/biojava/pull/1080#ref-issue-2251220993 |
|
Biojava core tests fail on Windows
#1092
| https://github.com/biojava/biojava/issues/1092 |
| Sign up for free | https://github.com/join?source=comment-repo |
| Sign in to comment | https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava%2Fpull%2F1080 |
|
| https://github.com/josemduarte |
|
josemduarte
| https://github.com/josemduarte |
|
| https://github.com/biojava/biojava/pull/1080/files/84998b92ab0ba0b57a378d47d93e1451d5827d2e |
| Please reload this page | https://github.com/biojava/biojava/pull/1080 |
|
| https://github.com/hilbertglm |
|
| https://github.com/josemduarte |
|
| https://github.com/heuermh |
|
| https://github.com |
| Terms | https://docs.github.com/site-policy/github-terms/github-terms-of-service |
| Privacy | https://docs.github.com/site-policy/privacy-policies/github-privacy-statement |
| Security | https://github.com/security |
| Status | https://www.githubstatus.com/ |
| Community | https://github.community/ |
| Docs | https://docs.github.com/ |
| Contact | https://support.github.com?tags=dotcom-footer |