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Title: History for biojava-structure - biojava/biojava · GitHub

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Description: :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. - History for biojava-structure - biojava/biojava

Open Graph Description: :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. - History for biojava-structure - biojava/biojava

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Adding safeguard, bug introduced in #1116 and reported in Biojava-lhttps://github.com/biojava/biojava/commit/7c3909fcff05b76440632518d6350474ca4365da
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Merge pull request #1119 from Pasjonat90D/fix/use-isempty-instead-of-size-#1079https://github.com/biojava/biojava/commit/70e9a742425acc2ceb2884e14277172c96cbd4ac
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Bugfix: edge-case with no equiv residues in alignment wasn't dealt with and led to IllegalArgumentException.https://github.com/biojava/biojava/commit/423cd86fbc2355f9943a3bbd81597c3d0c231627
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josemduartehttps://github.com/biojava/biojava/commits?author=josemduarte
5589e1ehttps://github.com/biojava/biojava/commit/5589e1eed3c92170c71fa5da80a3f528b37413a3
https://github.com/biojava/biojava/blob/5589e1eed3c92170c71fa5da80a3f528b37413a3/biojava-structure
https://github.com/biojava/biojava/tree/5589e1eed3c92170c71fa5da80a3f528b37413a3
Update biojava-structure/src/main/java/org/biojava/nbio/structure/io/cif/CifStructureConsumerImpl.javahttps://github.com/biojava/biojava/commit/48cb462e137a17d5161f390bbf265a11bc4f48ee
josemduartehttps://github.com/biojava/biojava/commits?author=josemduarte
sbittrichhttps://github.com/biojava/biojava/commits?author=sbittrich
48cb462https://github.com/biojava/biojava/commit/48cb462e137a17d5161f390bbf265a11bc4f48ee
https://github.com/biojava/biojava/blob/48cb462e137a17d5161f390bbf265a11bc4f48ee/biojava-structure
https://github.com/biojava/biojava/tree/48cb462e137a17d5161f390bbf265a11bc4f48ee
Deal with missing strand_idhttps://github.com/biojava/biojava/commit/2841770e794679818e8eab458b387d157b97f9ec
https://github.com/josemduarte
josemduartehttps://github.com/biojava/biojava/commits?author=josemduarte
2841770https://github.com/biojava/biojava/commit/2841770e794679818e8eab458b387d157b97f9ec
https://github.com/biojava/biojava/blob/2841770e794679818e8eab458b387d157b97f9ec/biojava-structure
https://github.com/biojava/biojava/tree/2841770e794679818e8eab458b387d157b97f9ec
Revert "Dealing with struct_ref_seq_dif strand_id by referencing through struct_ref_seq and struct_ref"https://github.com/biojava/biojava/commit/fdf98644c046416531cb53da0f67e8b7fc6a44cf
https://github.com/josemduarte
josemduartehttps://github.com/biojava/biojava/commits?author=josemduarte
fdf9864https://github.com/biojava/biojava/commit/fdf98644c046416531cb53da0f67e8b7fc6a44cf
https://github.com/biojava/biojava/blob/fdf98644c046416531cb53da0f67e8b7fc6a44cf/biojava-structure
https://github.com/biojava/biojava/tree/fdf98644c046416531cb53da0f67e8b7fc6a44cf
Logginghttps://github.com/biojava/biojava/commit/58136fe36f4c0c25d3227580e9e3d0b7f869dc7d
https://github.com/josemduarte
josemduartehttps://github.com/biojava/biojava/commits?author=josemduarte
58136fehttps://github.com/biojava/biojava/commit/58136fe36f4c0c25d3227580e9e3d0b7f869dc7d
https://github.com/biojava/biojava/blob/58136fe36f4c0c25d3227580e9e3d0b7f869dc7d/biojava-structure
https://github.com/biojava/biojava/tree/58136fe36f4c0c25d3227580e9e3d0b7f869dc7d
Dealing with struct_ref_seq_dif strand_id by referencing through struct_ref_seq and struct_refhttps://github.com/biojava/biojava/commit/8286260589643583c6d631a989b708b4d8c7b956
https://github.com/josemduarte
josemduartehttps://github.com/biojava/biojava/commits?author=josemduarte
8286260https://github.com/biojava/biojava/commit/8286260589643583c6d631a989b708b4d8c7b956
https://github.com/biojava/biojava/blob/8286260589643583c6d631a989b708b4d8c7b956/biojava-structure
https://github.com/biojava/biojava/tree/8286260589643583c6d631a989b708b4d8c7b956
Deal with some missing fields in IHMhttps://github.com/biojava/biojava/commit/a6723d42a22166de949bed6a6c4f4f1f29a87ee7
https://github.com/josemduarte
josemduartehttps://github.com/biojava/biojava/commits?author=josemduarte
a6723d4https://github.com/biojava/biojava/commit/a6723d42a22166de949bed6a6c4f4f1f29a87ee7
https://github.com/biojava/biojava/blob/a6723d42a22166de949bed6a6c4f4f1f29a87ee7/biojava-structure
https://github.com/biojava/biojava/tree/a6723d42a22166de949bed6a6c4f4f1f29a87ee7
[maven-release-plugin] prepare for next development iterationhttps://github.com/biojava/biojava/commit/6da7fd904f77d3c84bbb326671ea43d9c2a305d3
https://github.com/josemduarte
josemduartehttps://github.com/biojava/biojava/commits?author=josemduarte
6da7fd9https://github.com/biojava/biojava/commit/6da7fd904f77d3c84bbb326671ea43d9c2a305d3
https://github.com/biojava/biojava/blob/6da7fd904f77d3c84bbb326671ea43d9c2a305d3/biojava-structure
https://github.com/biojava/biojava/tree/6da7fd904f77d3c84bbb326671ea43d9c2a305d3
[maven-release-plugin] prepare release biojava-7.2.0https://github.com/biojava/biojava/commit/48992a6b126fc6c0ba4ecda15e49c089cea0ebaf
https://github.com/josemduarte
josemduartehttps://github.com/biojava/biojava/commits?author=josemduarte
48992a6https://github.com/biojava/biojava/commit/48992a6b126fc6c0ba4ecda15e49c089cea0ebaf
https://github.com/biojava/biojava/blob/48992a6b126fc6c0ba4ecda15e49c089cea0ebaf/biojava-structure
https://github.com/biojava/biojava/tree/48992a6b126fc6c0ba4ecda15e49c089cea0ebaf
Merge pull request #1106 from josemduarte/cifparsing-lenienthttps://github.com/biojava/biojava/commit/77c2911e50938d8bca9c236aa328982f96004112
https://github.com/josemduarte
josemduartehttps://github.com/biojava/biojava/commits?author=josemduarte
77c2911https://github.com/biojava/biojava/commit/77c2911e50938d8bca9c236aa328982f96004112
https://github.com/biojava/biojava/blob/77c2911e50938d8bca9c236aa328982f96004112/biojava-structure
https://github.com/biojava/biojava/tree/77c2911e50938d8bca9c236aa328982f96004112
Review commenthttps://github.com/biojava/biojava/commit/a5b46ab0bb748317516dbdb95f18bb8ab30fb2ca
https://github.com/josemduarte
josemduartehttps://github.com/biojava/biojava/commits?author=josemduarte
a5b46abhttps://github.com/biojava/biojava/commit/a5b46ab0bb748317516dbdb95f18bb8ab30fb2ca
https://github.com/biojava/biojava/blob/a5b46ab0bb748317516dbdb95f18bb8ab30fb2ca/biojava-structure
https://github.com/biojava/biojava/tree/a5b46ab0bb748317516dbdb95f18bb8ab30fb2ca
Fix: first model is model index 0https://github.com/biojava/biojava/commit/324319e20d5c2ffcbe8b2d10189e369b590a34aa
https://github.com/josemduarte
josemduartehttps://github.com/biojava/biojava/commits?author=josemduarte
324319ehttps://github.com/biojava/biojava/commit/324319e20d5c2ffcbe8b2d10189e369b590a34aa
https://github.com/biojava/biojava/blob/324319e20d5c2ffcbe8b2d10189e369b590a34aa/biojava-structure
https://github.com/biojava/biojava/tree/324319e20d5c2ffcbe8b2d10189e369b590a34aa
Bugfix: ASA calculation was by default using all models. Now it will use model 1 by default. Added new constructor to choose model.https://github.com/biojava/biojava/commit/c45c3dd05beaed3f214b991526f713d9090b5e1f
https://github.com/josemduarte
josemduartehttps://github.com/biojava/biojava/commits?author=josemduarte
c45c3ddhttps://github.com/biojava/biojava/commit/c45c3dd05beaed3f214b991526f713d9090b5e1f
https://github.com/biojava/biojava/blob/c45c3dd05beaed3f214b991526f713d9090b5e1f/biojava-structure
https://github.com/biojava/biojava/tree/c45c3dd05beaed3f214b991526f713d9090b5e1f
Nexthttps://github.com/biojava/biojava/commits/biojava-7.2.5/biojava-structure?after=5d047ab428b176a437131d31171c7f779caa239e+34
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