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Title: support zipfile.ZipFile, improve docs and improve get_io_sample_block_metas by FynnBe · Pull Request #432 · bioimage-io/core-bioimage-io-python · GitHub

Open Graph Title: support zipfile.ZipFile, improve docs and improve get_io_sample_block_metas by FynnBe · Pull Request #432 · bioimage-io/core-bioimage-io-python

X Title: support zipfile.ZipFile, improve docs and improve get_io_sample_block_metas by FynnBe · Pull Request #432 · bioimage-io/core-bioimage-io-python

Description: Python libraries for loading, running and packaging bioimage.io models - support zipfile.ZipFile, improve docs and improve get_io_sample_block_metas by FynnBe · Pull Request #432 · bioimage-io/core-bioimage-io-python

Open Graph Description: needs bioimage-io/spec-bioimage-io#640

X Description: needs bioimage-io/spec-bioimage-io#640

Opengraph URL: https://github.com/bioimage-io/core-bioimage-io-python/pull/432

X: @github

direct link

Domain: github.com

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support zipfile.ZipFile, improve docs and improve get_io_sample_block_metashttps://github.com/bioimage-io/core-bioimage-io-python/pull/432#top
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WIP update for download returning zipfile.Pathhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/fa050eb9dec4d33931fb72ebb60015f06b0e1a17
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expose submodules explicitlyhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/29f45f237355129a6b4846976a5e0714bef57119
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use resolve_and_extract in _import_from_file_implhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/e38a79eb9f91c586d7c2aa3c566d916793181e8d
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avoid circular importshttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/5cef0f468e25c68bcb1b581f33ed5522a7f8a411
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update use of ValidationDetailhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/6ef4a2d18689c528fb89f165dd0327983a396796
6ef4a2dhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/6ef4a2d18689c528fb89f165dd0327983a396796
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update dev envshttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/eaa424f053b9798ad7c1149635ceacc6c89dde74
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18bed26https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/18bed2670fdb944e74d337288af1f1f8ea36c12b
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improve get_io_sample_block_metashttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/3fbf0c51192e5f19d0c36debbe5b0d4d3819d8b9
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raise ValueError instead of assertionhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/2705e74ab4432ca6cb10fb3bdbb49591f763e505
2705e74https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/2705e74ab4432ca6cb10fb3bdbb49591f763e505
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Nov 7, 2024https://github.com/bioimage-io/core-bioimage-io-python/pull/432#event-15188860099
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November 7, 2024 20:19https://github.com/bioimage-io/core-bioimage-io-python/pull/432#commits-pushed-51b3fa3
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update to spec changeshttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/51b3fa31b74c541673d4d59247c2ac7032550c5b
51b3fa3https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/51b3fa31b74c541673d4d59247c2ac7032550c5b
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update python versions for toolshttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/3f81091c3cc4430c52f044508d715cd53f061996
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add test case predicthttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/f052891200b794d988b857d6a83434c37fbe4d61
f052891https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/f052891200b794d988b857d6a83434c37fbe4d61
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improve coverage reportinghttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/d3150750603abe34420ceacb5afdd02a8d078b0a
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update pdoc doc generationhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/4de7672d3482ee6f49ad40c1d2ee1fc8d24770f6
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fix test_bioimageio_spec_versionhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/fe993d03adf966ca2c85bc011b724246eb451b92
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Please reload this pagehttps://github.com/bioimage-io/core-bioimage-io-python/pull/432
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November 12, 2024 23:08https://github.com/bioimage-io/core-bioimage-io-python/pull/432#commits-pushed-8a8cb00
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add test_commandshttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/8a8cb00b0b64f10e913bb6bbb6e986084e5e2c66
8a8cb00https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/8a8cb00b0b64f10e913bb6bbb6e986084e5e2c66
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WIP add test_predictionhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/a9d11320c596cae8d7264a1550beccd49eef6e83
a9d1132https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/a9d11320c596cae8d7264a1550beccd49eef6e83
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use bioimageio cachehttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/c97a89301a097e5026a037dc0ea289af902d325a
c97a893https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/c97a89301a097e5026a037dc0ea289af902d325a
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fix typohttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/f9c3bf09c43c738f1f2cc50af09701d9a6d4a47c
f9c3bf0https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/f9c3bf09c43c738f1f2cc50af09701d9a6d4a47c
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WIP fix tests and cleanuphttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/27ef7479c76b79224de549562fd2a2c1ba36789c
27ef747https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/27ef7479c76b79224de549562fd2a2c1ba36789c
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fix deprecation warninghttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/0043abf193730194e3f866c0b5dc95eb3ee67e45
0043abfhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/0043abf193730194e3f866c0b5dc95eb3ee67e45
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fix assert_never importhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/4da67665c252967e184ade9d1080f16f1e713a8f
4da6766https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/4da67665c252967e184ade9d1080f16f1e713a8f
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add explicit support for h5https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/4cbf9ef17b5754c9a1922cd4f34eb00cc41231fc
4cbf9efhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/4cbf9ef17b5754c9a1922cd4f34eb00cc41231fc
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improve error messages for split_multiple_shapes_into_blockshttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/37acc798a678409b1b3ce142340ecc0b15442084
37acc79https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/37acc798a678409b1b3ce142340ecc0b15442084
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adapt test to multi tensor modelhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/f155c9dcb08d3f4697bd5a68b626395d2b41ddb6
f155c9dhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/f155c9dcb08d3f4697bd5a68b626395d2b41ddb6
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fix docstring testhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/150df649a21e422e8a832fbb2eabef2fb01dda5a
150df64https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/150df649a21e422e8a832fbb2eabef2fb01dda5a
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bump minor and spechttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/b8bad0bf54c4004004f474360bed612126a6add2
b8bad0bhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/b8bad0bf54c4004004f474360bed612126a6add2
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add enable_determinismhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/a1b6f5cd467bb1bf338edf892b0c45c25df6cfaf
a1b6f5chttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/a1b6f5cd467bb1bf338edf892b0c45c25df6cfaf
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use determinism and refactor decimalhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/324f15c8cdee6941b00c0ed8c7da2ce6487a9fda
324f15chttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/324f15c8cdee6941b00c0ed8c7da2ce6487a9fda
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update changeloghttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/b40c0e52823663268f43407f167f0199cfb57c2e
b40c0e5https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/b40c0e52823663268f43407f167f0199cfb57c2e
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pin tifffilehttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/e34ad21e3e6c2b50186c960f119054efbfe723b5
e34ad21https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/e34ad21e3e6c2b50186c960f119054efbfe723b5
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force-pushedhttps://github.com/bioimage-io/core-bioimage-io-python/compare/d37b7fac9ff9f343526f680d96993996f1d6ae41..e34ad21e3e6c2b50186c960f119054efbfe723b5
d37b7fahttps://github.com/bioimage-io/core-bioimage-io-python/commit/d37b7fac9ff9f343526f680d96993996f1d6ae41
e34ad21https://github.com/bioimage-io/core-bioimage-io-python/commit/e34ad21e3e6c2b50186c960f119054efbfe723b5
Compare https://github.com/bioimage-io/core-bioimage-io-python/compare/d37b7fac9ff9f343526f680d96993996f1d6ae41..e34ad21e3e6c2b50186c960f119054efbfe723b5
November 18, 2024 10:04https://github.com/bioimage-io/core-bioimage-io-python/pull/432#event-15331593635
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November 18, 2024 13:30https://github.com/bioimage-io/core-bioimage-io-python/pull/432#commits-pushed-e5deb74
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test with py3.13 and for TF with spec-mainhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/e5deb74b7841b89e4d6ddfe6d6226f7cb1181264
e5deb74https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/e5deb74b7841b89e4d6ddfe6d6226f7cb1181264
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test up to py3.12 (onnxruntime and tf not available for py3.13)https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/ee80605b479b3ef70cf32079cfeb125506c6e3df
ee80605https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/ee80605b479b3ef70cf32079cfeb125506c6e3df
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tf 2.15 requires py>=3.9https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/bcc905e07e2ee678c41f31940643cd5432eb0849
bcc905ehttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/bcc905e07e2ee678c41f31940643cd5432eb0849
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bump spec versionhttps://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/07cc873b62245e034e4cc90aeb83020794be0bc3
07cc873https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/07cc873b62245e034e4cc90aeb83020794be0bc3
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remove tifffile dep (now in spec)https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/cf484115490040b5af7e36a5883428d1cbf21aff
cf48411https://github.com/bioimage-io/core-bioimage-io-python/pull/432/commits/cf484115490040b5af7e36a5883428d1cbf21aff
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6a10672https://github.com/bioimage-io/core-bioimage-io-python/commit/6a106728a2efc38a7ada71f81ab7fa41cc465d95
Nov 18, 2024https://github.com/bioimage-io/core-bioimage-io-python/pull/432#event-15341316058
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November 18, 2024 22:55https://github.com/bioimage-io/core-bioimage-io-python/pull/432#event-15341316407
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