René's URL Explorer Experiment

{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"New predict command: tiled prediction not working for model v0.4","articleBody":"Tiled prediction seems to not be implemented for v0.4 models:\r\n```python\r\nimport bioimageio.core\r\nimport imageio.v3 as imageio\r\nfrom xarray import DataArray\r\n\r\nfrom bioimageio.spec.model.v0_5 import AxisId\r\n\r\nimage = imageio.imread(\"/home/pape/.cache/micro_sam/sample_data/livecell-2d-image.png\")\r\nmodel = bioimageio.core.load_description(\"hiding-tiger\")\r\nmodel.inputs[0].data_type = \"float32\"\r\n\r\ninput_descr = model.inputs[0]\r\n# this still does not work for me! (It would be great to fix it)\r\n# inputs = {input_descr.name: DataArray(image[None, None], dims=tuple(input_descr.axes))}\r\ninputs = {input_descr.name: DataArray(image[None, None], dims=(\"batch\", \"channel\", \"y\", \"x\"))}\r\n\r\n# tile_shape = {\"y\": 512, \"x\": 512}\r\ntile_shape = {input_descr.name: {AxisId(\"x\"): 512, AxisId(\"y\"): 512}}\r\npred = bioimageio.core.predict(model=model, inputs=inputs, input_block_shape=tile_shape)\r\n```\r\nfails with\r\n```\r\nTraceback (most recent call last):\r\n  File \"/home/pape/Work/playground/bioimageio/new-pred/check_new_pred.py\", line 18, in \u003cmodule\u003e\r\n    pred = bioimageio.core.predict(model=model, inputs=inputs, input_block_shape=tile_shape)\r\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n  File \"/home/pape/Work/bioimageio/core-bioimage-io-python/bioimageio/core/prediction.py\", line 100, in predict\r\n    output = pp.predict_sample_with_fixed_blocking(\r\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n  File \"/home/pape/Work/bioimageio/core-bioimage-io-python/bioimageio/core/_prediction_pipeline.py\", line 208, in predict_sample_with_fixed_blocking\r\n    self.predict_sample_block(\r\n  File \"/home/pape/Work/bioimageio/core-bioimage-io-python/bioimageio/core/_prediction_pipeline.py\", line 114, in predict_sample_block\r\n    raise NotImplementedError(\r\nNotImplementedError: predict_sample_block not implemented for model 0.4.10\r\n```","author":{"url":"https://github.com/constantinpape","@type":"Person","name":"constantinpape"},"datePublished":"2024-08-23T08:35:44.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":3},"url":"https://github.com/415/core-bioimage-io-python/issues/415"}