René's URL Explorer Experiment

{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"New predict command: how to pass input_block_shape?","articleBody":"It's unclear how to pass the value for `input_block_shape` in order to specify a fixed tiling shape.\r\nThe code\r\n```python\r\nimport bioimageio.core\r\nimport imageio.v3 as imageio\r\nfrom xarray import DataArray\r\n\r\n# For a reproducible example you can use the model test inputs.\r\n# (I cannot easily figure out how to load them from the model ...)\r\nimage = imageio.imread(\"/home/pape/.cache/micro_sam/sample_data/livecell-2d-image.png\")\r\nmodel = bioimageio.core.load_description(\"hiding-tiger\")\r\n\r\ninputs = {model.inputs[0].name: DataArray(image[None, None], dims=(\"batch\", \"channel\", \"y\", \"x\"))}\r\n\r\ntile_shape = {\"y\": 512, \"x\": 512}\r\npred = bioimageio.core.predict(model=model, inputs=inputs, input_block_shape=tile_shape)\r\n```\r\nfails with\r\n```\r\nTraceback (most recent call last):\r\n  File \"/home/pape/Work/playground/bioimageio/new-pred/check_new_pred.py\", line 13, in \u003cmodule\u003e\r\n    pred = bioimageio.core.predict(model=model, inputs=inputs, input_block_shape=tile_shape)\r\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n  File \"/home/pape/Work/bioimageio/core-bioimage-io-python/bioimageio/core/prediction.py\", line 100, in predict\r\n    output = pp.predict_sample_with_fixed_blocking(\r\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n  File \"/home/pape/Work/bioimageio/core-bioimage-io-python/bioimageio/core/_prediction_pipeline.py\", line 193, in predict_sample_with_fixed_blocking\r\n    n_blocks, input_blocks = sample.split_into_blocks(\r\n                             ^^^^^^^^^^^^^^^^^^^^^^^^^\r\n  File \"/home/pape/Work/bioimageio/core-bioimage-io-python/bioimageio/core/sample.py\", line 68, in split_into_blocks\r\n    assert not (\r\n```","author":{"url":"https://github.com/constantinpape","@type":"Person","name":"constantinpape"},"datePublished":"2024-08-22T14:52:54.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":3},"url":"https://github.com/414/core-bioimage-io-python/issues/414"}