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Title: GitHub - beaplab/amorphea_evolution: Set of input and script files used in "The evolution of gene functional repertoire in Amorphea: Divergent strategies across Amoebozoa, Fungi, and Metazoa" · GitHub

Open Graph Title: GitHub - beaplab/amorphea_evolution: Set of input and script files used in "The evolution of gene functional repertoire in Amorphea: Divergent strategies across Amoebozoa, Fungi, and Metazoa"

X Title: GitHub - beaplab/amorphea_evolution: Set of input and script files used in "The evolution of gene functional repertoire in Amorphea: Divergent strategies across Amoebozoa, Fungi, and Metazoa"

Description: Set of input and script files used in "The evolution of gene functional repertoire in Amorphea: Divergent strategies across Amoebozoa, Fungi, and Metazoa" - beaplab/amorphea_evolution

Open Graph Description: Set of input and script files used in "The evolution of gene functional repertoire in Amorphea: Divergent strategies across Amoebozoa, Fungi, and Metazoa" - beaplab/amorphea_evolution

X Description: Set of input and script files used in "The evolution of gene functional repertoire in Amorphea: Divergent strategies across Amoebozoa, Fungi, and Metazoa" - beaplab/amorphea_evolution

Mail addresses
alexgalvez38@gmail.com
alex.galvez@ibe.upf-csic.es

Opengraph URL: https://github.com/beaplab/amorphea_evolution

X: @github

direct link

Domain: github.com

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7 Commits	https://github.com/beaplab/amorphea_evolution/commits/main/
	https://github.com/beaplab/amorphea_evolution/commits/main/
README.md	https://github.com/beaplab/amorphea_evolution/blob/main/README.md
README.md	https://github.com/beaplab/amorphea_evolution/blob/main/README.md
clean_COG_per_species_and_protein_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_COG_per_species_and_protein_v4.R
clean_COG_per_species_and_protein_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_COG_per_species_and_protein_v4.R
clean_COGs_per_og_and_protein_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_COGs_per_og_and_protein_v4.R
clean_COGs_per_og_and_protein_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_COGs_per_og_and_protein_v4.R
clean_Pfams_per_og_and_protein_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_Pfams_per_og_and_protein_v4.R
clean_Pfams_per_og_and_protein_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_Pfams_per_og_and_protein_v4.R
clean_amoebozoa_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_amoebozoa_cca_v4.R
clean_amoebozoa_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_amoebozoa_cca_v4.R
clean_amoebozoa_genome_transcriptome_check_COG_per_species_and_protein_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_amoebozoa_genome_transcriptome_check_COG_per_species_and_protein_v4.R
clean_amoebozoa_genome_transcriptome_check_COG_per_species_and_protein_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_amoebozoa_genome_transcriptome_check_COG_per_species_and_protein_v4.R
clean_amoebozoa_genome_transcriptome_check_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_amoebozoa_genome_transcriptome_check_cca_v4.R
clean_amoebozoa_genome_transcriptome_check_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_amoebozoa_genome_transcriptome_check_cca_v4.R
clean_amoebozoa_vs_fungi_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_amoebozoa_vs_fungi_cca_v4.R
clean_amoebozoa_vs_fungi_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_amoebozoa_vs_fungi_cca_v4.R
clean_analyze_internal_nodes_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_analyze_internal_nodes_v4.R
clean_analyze_internal_nodes_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_analyze_internal_nodes_v4.R
clean_ancestors_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_ancestors_cca_v4.R
clean_ancestors_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_ancestors_cca_v4.R
clean_automatic_notung_clusters_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_automatic_notung_clusters_v4.R
clean_automatic_notung_clusters_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_automatic_notung_clusters_v4.R
clean_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_cca_v4.R
clean_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_cca_v4.R
clean_check_dictis_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_check_dictis_v4.R
clean_check_dictis_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_check_dictis_v4.R
clean_metazoa_vs_amoebozoa_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_metazoa_vs_amoebozoa_cca_v4.R
clean_metazoa_vs_amoebozoa_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_metazoa_vs_amoebozoa_cca_v4.R
clean_metazoa_vs_fungi_COG_per_species_and_protein_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_metazoa_vs_fungi_COG_per_species_and_protein_v4.R
clean_metazoa_vs_fungi_COG_per_species_and_protein_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_metazoa_vs_fungi_COG_per_species_and_protein_v4.R
clean_metazoa_vs_fungi_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_metazoa_vs_fungi_cca_v4.R
clean_metazoa_vs_fungi_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_metazoa_vs_fungi_cca_v4.R
clean_percentual_gains_losses.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_percentual_gains_losses.R
clean_percentual_gains_losses.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_percentual_gains_losses.R
clean_random_check_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_random_check_cca_v4.R
clean_random_check_cca_v4.R	https://github.com/beaplab/amorphea_evolution/blob/main/clean_random_check_cca_v4.R
extract_COG_from_eggnog_without_hashtags.pl	https://github.com/beaplab/amorphea_evolution/blob/main/extract_COG_from_eggnog_without_hashtags.pl
extract_COG_from_eggnog_without_hashtags.pl	https://github.com/beaplab/amorphea_evolution/blob/main/extract_COG_from_eggnog_without_hashtags.pl
extract_Pfam_from_eggnog_without_hashtags.pl	https://github.com/beaplab/amorphea_evolution/blob/main/extract_Pfam_from_eggnog_without_hashtags.pl
extract_Pfam_from_eggnog_without_hashtags.pl	https://github.com/beaplab/amorphea_evolution/blob/main/extract_Pfam_from_eggnog_without_hashtags.pl
README	https://github.com/beaplab/amorphea_evolution
	https://github.com/beaplab/amorphea_evolution#amorphea_evolution
	https://github.com/beaplab/amorphea_evolution#-script-usage-overview
	https://github.com/beaplab/amorphea_evolution#️-pipeline-phases
	https://github.com/beaplab/amorphea_evolution#️-phase-0-input-files-to-pipeline
	https://github.com/beaplab/amorphea_evolution#-phase-1-data-extraction--preprocessing
	https://github.com/beaplab/amorphea_evolution#-phase-2-cog-processing
	https://github.com/beaplab/amorphea_evolution#-phase-3-genometranscriptome-comparisons
	https://github.com/beaplab/amorphea_evolution#-phase-4-ancestor--correspondence-analyses-ca
	https://github.com/beaplab/amorphea_evolution#-phase-5-pfam-clan-analyses
	https://github.com/beaplab/amorphea_evolution#-citation
	https://github.com/beaplab/amorphea_evolution#-contact
Readme	https://github.com/beaplab/amorphea_evolution#readme-ov-file
Please reload this page	https://github.com/beaplab/amorphea_evolution
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Please reload this page	https://github.com/beaplab/amorphea_evolution
R 99.0%	https://github.com/beaplab/amorphea_evolution/search?l=r
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