René's URL Explorer Experiment


Title: GitHub - batchx/lumpy-sv: lumpy: a general probabilistic framework for structural variant discovery · GitHub

Open Graph Title: GitHub - batchx/lumpy-sv: lumpy: a general probabilistic framework for structural variant discovery

X Title: GitHub - batchx/lumpy-sv: lumpy: a general probabilistic framework for structural variant discovery

Description: lumpy: a general probabilistic framework for structural variant discovery - batchx/lumpy-sv

Open Graph Description: lumpy: a general probabilistic framework for structural variant discovery - batchx/lumpy-sv

X Description: lumpy: a general probabilistic framework for structural variant discovery - batchx/lumpy-sv

Opengraph URL: https://github.com/batchx/lumpy-sv

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:5ba9b8ae-d6b0-3da5-cbcd-598ac82327c5
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idC9F2:17E75B:179E975:21B6F12:6A575860
html-safe-noncefa325980c9fd045a19d646c98ac0ca449cd6b92957b10aace112faa17af57d0b
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJDOUYyOjE3RTc1QjoxNzlFOTc1OjIxQjZGMTI6NkE1NzU4NjAiLCJ2aXNpdG9yX2lkIjoiNjgxNTU1MjEzMDU2MjYxMTI5NiIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac48cd1082f6fef515d3feb8665ef2a69061bc346e0dffbbd0f6946cd9f0537018
hovercard-subject-tagrepository:500896196
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/batchx/lumpy-sv
twitter:imagehttps://opengraph.githubassets.com/13339b9b00d9d6bc3ee2bf7b2f4f0daf06d2608de58fe146209db5ccadfe9ed2/batchx/lumpy-sv
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/13339b9b00d9d6bc3ee2bf7b2f4f0daf06d2608de58fe146209db5ccadfe9ed2/batchx/lumpy-sv
og:image:altlumpy: a general probabilistic framework for structural variant discovery - batchx/lumpy-sv
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None4e7a7296a3830877cf21a6ad2a972c9e618a48915e03966cf0c53eb08e5aad98
turbo-cache-controlno-cache
go-importgithub.com/batchx/lumpy-sv git https://github.com/batchx/lumpy-sv.git
octolytics-dimension-user_id49999257
octolytics-dimension-user_loginbatchx
octolytics-dimension-repository_id500896196
octolytics-dimension-repository_nwobatchx/lumpy-sv
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id6121988
octolytics-dimension-repository_parent_nwoarq5x/lumpy-sv
octolytics-dimension-repository_network_root_id6121988
octolytics-dimension-repository_network_root_nwoarq5x/lumpy-sv
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release602250ea3b6dd8302a7220ef98adb828dbc807e4
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/batchx/lumpy-sv#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbatchx%2Flumpy-sv
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/open-source/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/open-source/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/enterprise/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbatchx%2Flumpy-sv
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=batchx%2Flumpy-sv
Reloadhttps://github.com/batchx/lumpy-sv
Reloadhttps://github.com/batchx/lumpy-sv
Reloadhttps://github.com/batchx/lumpy-sv
Please reload this pagehttps://github.com/batchx/lumpy-sv
batchx https://github.com/batchx
lumpy-svhttps://github.com/batchx/lumpy-sv
arq5x/lumpy-svhttps://github.com/arq5x/lumpy-sv
Notifications https://github.com/login?return_to=%2Fbatchx%2Flumpy-sv
Fork 0 https://github.com/login?return_to=%2Fbatchx%2Flumpy-sv
Star 0 https://github.com/login?return_to=%2Fbatchx%2Flumpy-sv
Code https://github.com/batchx/lumpy-sv
Pull requests 0 https://github.com/batchx/lumpy-sv/pulls
Actions https://github.com/batchx/lumpy-sv/actions
Projects https://github.com/batchx/lumpy-sv/projects
Security and quality 0 https://github.com/batchx/lumpy-sv/security
Insights https://github.com/batchx/lumpy-sv/pulse
Code https://github.com/batchx/lumpy-sv
Pull requests https://github.com/batchx/lumpy-sv/pulls
Actions https://github.com/batchx/lumpy-sv/actions
Projects https://github.com/batchx/lumpy-sv/projects
Security and quality https://github.com/batchx/lumpy-sv/security
Insights https://github.com/batchx/lumpy-sv/pulse
https://github.com/batchx/lumpy-sv
Brancheshttps://github.com/batchx/lumpy-sv/branches
Tagshttps://github.com/batchx/lumpy-sv/tags
https://github.com/batchx/lumpy-sv/branches
https://github.com/batchx/lumpy-sv/tags
574 Commitshttps://github.com/batchx/lumpy-sv/commits/master/
https://github.com/batchx/lumpy-sv/commits/master/
.ideahttps://github.com/batchx/lumpy-sv/tree/master/.idea
.ideahttps://github.com/batchx/lumpy-sv/tree/master/.idea
batchx/lumpyexpresshttps://github.com/batchx/lumpy-sv/tree/master/batchx/lumpyexpress
batchx/lumpyexpresshttps://github.com/batchx/lumpy-sv/tree/master/batchx/lumpyexpress
datahttps://github.com/batchx/lumpy-sv/tree/master/data
datahttps://github.com/batchx/lumpy-sv/tree/master/data
libhttps://github.com/batchx/lumpy-sv/tree/master/lib
libhttps://github.com/batchx/lumpy-sv/tree/master/lib
lumpy_testshttps://github.com/batchx/lumpy-sv/tree/master/lumpy_tests
lumpy_testshttps://github.com/batchx/lumpy-sv/tree/master/lumpy_tests
scriptshttps://github.com/batchx/lumpy-sv/tree/master/scripts
scriptshttps://github.com/batchx/lumpy-sv/tree/master/scripts
srchttps://github.com/batchx/lumpy-sv/tree/master/src
srchttps://github.com/batchx/lumpy-sv/tree/master/src
testhttps://github.com/batchx/lumpy-sv/tree/master/test
testhttps://github.com/batchx/lumpy-sv/tree/master/test
.gitignorehttps://github.com/batchx/lumpy-sv/blob/master/.gitignore
.gitignorehttps://github.com/batchx/lumpy-sv/blob/master/.gitignore
.gitmoduleshttps://github.com/batchx/lumpy-sv/blob/master/.gitmodules
.gitmoduleshttps://github.com/batchx/lumpy-sv/blob/master/.gitmodules
.travis.ymlhttps://github.com/batchx/lumpy-sv/blob/master/.travis.yml
.travis.ymlhttps://github.com/batchx/lumpy-sv/blob/master/.travis.yml
LICENSEhttps://github.com/batchx/lumpy-sv/blob/master/LICENSE
LICENSEhttps://github.com/batchx/lumpy-sv/blob/master/LICENSE
Makefilehttps://github.com/batchx/lumpy-sv/blob/master/Makefile
Makefilehttps://github.com/batchx/lumpy-sv/blob/master/Makefile
README.mdhttps://github.com/batchx/lumpy-sv/blob/master/README.md
README.mdhttps://github.com/batchx/lumpy-sv/blob/master/README.md
READMEhttps://github.com/batchx/lumpy-sv
Licensehttps://github.com/batchx/lumpy-sv
https://groups.google.com/forum/#!forum/lumpy-discusshttps://groups.google.com/forum/#!forum/lumpy-discuss
https://travis-ci.org/arq5x/lumpy-sv
https://platform.batchx.io/layer-lab/tools/lumpy-sv%2Flumpyexpress
https://github.com/batchx/lumpy-sv#lumpy
doi:10.1186/gb-2014-15-6-r84http://dx.doi.org/10.1186/gb-2014-15-6-r84
https://github.com/batchx/lumpy-sv#table-of-contents
Quick starthttps://github.com/batchx/lumpy-sv#quick-start
Installationhttps://github.com/batchx/lumpy-sv#installation
LUMPY Express usagehttps://github.com/batchx/lumpy-sv#lumpy-express-usage
LUMPY (traditional) usagehttps://github.com/batchx/lumpy-sv#lumpy-traditional-usage
Example workflowshttps://github.com/batchx/lumpy-sv#example-workflows
Test datahttps://github.com/batchx/lumpy-sv#test-data
Troubleshootinghttps://github.com/batchx/lumpy-sv#troubleshooting
https://github.com/batchx/lumpy-sv#quick-start
smoovehttps://github.com/brentp/smoove
https://github.com/batchx/lumpy-sv#installation
https://github.com/batchx/lumpy-sv#requirements
htslib.org/http://www.htslib.org/
github repohttps://github.com/GregoryFaust/samblaster
python.org/https://www.python.org/
gihub repohttps://github.com/lomereiter/sambamba
GNU projecthttps://www.gnu.org/software/gawk/
https://github.com/batchx/lumpy-sv#install
https://github.com/batchx/lumpy-sv#lumpy-express-usage
https://github.com/batchx/lumpy-sv#configuration
scripts/lumpyexpress.confighttps://github.com/batchx/lumpy-sv/blob/master/scripts/lumpyexpress.config
https://github.com/batchx/lumpy-sv#input
https://github.com/batchx/lumpy-sv#output
VCF spec 4.2https://samtools.github.io/hts-specs/VCFv4.2.pdf
https://github.com/batchx/lumpy-sv#lumpy-traditional-usage
https://github.com/batchx/lumpy-sv#example-workflows
https://github.com/batchx/lumpy-sv#pre-processing
SpeedSeqhttps://github.com/cc2qe/speedseq
https://github.com/batchx/lumpy-sv#running-lumpy
https://github.com/batchx/lumpy-sv#lumpy-express
https://github.com/batchx/lumpy-sv#lumpy-traditional
https://doi.org/10.1093/bioinformatics/btu356https://doi.org/10.1093/bioinformatics/btu356
https://github.com/batchx/lumpy-sv#post-processing
SVTyperhttps://github.com/hall-lab/svtyper
https://github.com/batchx/lumpy-sv#test-data
http://layerlab.org/lumpy/data.tar.gzhttp://layerlab.org/lumpy/data.tar.gz
https://github.com/batchx/lumpy-sv#troubleshooting
Readme https://github.com/batchx/lumpy-sv#readme-ov-file
MIT license https://github.com/batchx/lumpy-sv#MIT-1-ov-file
Please reload this pagehttps://github.com/batchx/lumpy-sv
Activityhttps://github.com/batchx/lumpy-sv/activity
Custom propertieshttps://github.com/batchx/lumpy-sv/custom-properties
0 forkshttps://github.com/batchx/lumpy-sv/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fbatchx%2Flumpy-sv&report=batchx+%28user%29
Releaseshttps://github.com/batchx/lumpy-sv/releases
22 tags https://github.com/batchx/lumpy-sv/tags
Packages 0https://github.com/orgs/batchx/packages?repo_name=lumpy-sv
Please reload this pagehttps://github.com/batchx/lumpy-sv
Contributorshttps://github.com/batchx/lumpy-sv/graphs/contributors
Please reload this pagehttps://github.com/batchx/lumpy-sv
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.