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Title: GitHub - aziele/pairwise-sequence-alignment: A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water · GitHub

Open Graph Title: GitHub - aziele/pairwise-sequence-alignment: A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water

X Title: GitHub - aziele/pairwise-sequence-alignment: A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water

Description: A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water - aziele/pairwise-sequence-alignment

Open Graph Description: A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water - aziele/pairwise-sequence-alignment

X Description: A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water - aziele/pairwise-sequence-alignment

Opengraph URL: https://github.com/aziele/pairwise-sequence-alignment

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README.md	https://github.com/aziele/pairwise-sequence-alignment/blob/main/README.md
README.md	https://github.com/aziele/pairwise-sequence-alignment/blob/main/README.md
psa.py	https://github.com/aziele/pairwise-sequence-alignment/blob/main/psa.py
psa.py	https://github.com/aziele/pairwise-sequence-alignment/blob/main/psa.py
pyproject.toml	https://github.com/aziele/pairwise-sequence-alignment/blob/main/pyproject.toml
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test.py	https://github.com/aziele/pairwise-sequence-alignment/blob/main/test.py
README	https://github.com/aziele/pairwise-sequence-alignment
GPL-3.0 license	https://github.com/aziele/pairwise-sequence-alignment
	https://github.com/aziele/pairwise-sequence-alignment#pairwise-sequence-alignment-psa
	https://camo.githubusercontent.com/ebf0522d4c4034bde97b54a2109a47d292922d813b9abb61d42997c26a01831f/68747470733a2f2f696d672e736869656c64732e696f2f707970692f762f70616972776973652d73657175656e63652d616c69676e6d656e743f6c6162656c3d76657273696f6e
needle	https://www.ebi.ac.uk/Tools/psa/emboss_needle/
stretcher	https://www.ebi.ac.uk/jdispatcher/psa/emboss_stretcher
water	https://www.ebi.ac.uk/Tools/psa/emboss_water/
	https://github.com/aziele/pairwise-sequence-alignment#table-of-contents
Introduction	https://github.com/aziele/pairwise-sequence-alignment#introduction
Requirements	https://github.com/aziele/pairwise-sequence-alignment#requirements
Installation	https://github.com/aziele/pairwise-sequence-alignment#installation
Quick Start	https://github.com/aziele/pairwise-sequence-alignment#quick-start
Alignment object	https://github.com/aziele/pairwise-sequence-alignment#alignment-object
Attributes	https://github.com/aziele/pairwise-sequence-alignment#attributes
Methods	https://github.com/aziele/pairwise-sequence-alignment#methods
Usage examples	https://github.com/aziele/pairwise-sequence-alignment#usage-examples
Alignment information	https://github.com/aziele/pairwise-sequence-alignment#alignment-information
Alignment in raw format	https://github.com/aziele/pairwise-sequence-alignment#alignment-in-raw-format
Alignment in FASTA format	https://github.com/aziele/pairwise-sequence-alignment#alignment-in-fasta-format
Alignment iteration	https://github.com/aziele/pairwise-sequence-alignment#alignment-iteration
Alignment iteration with index	https://github.com/aziele/pairwise-sequence-alignment#alignment-iteration-with-index
Query coverage	https://github.com/aziele/pairwise-sequence-alignment#query-coverage
Scoring scheme for alignment	https://github.com/aziele/pairwise-sequence-alignment#scoring-scheme-for-alignment
Statistical significance of alignment	https://github.com/aziele/pairwise-sequence-alignment#statistical-significance-of-alignment
All-against-all pairwise alignments	https://github.com/aziele/pairwise-sequence-alignment#all-against-all-pairwise-alignments
Tests	https://github.com/aziele/pairwise-sequence-alignment#tests
License	https://github.com/aziele/pairwise-sequence-alignment#license
	https://github.com/aziele/pairwise-sequence-alignment#introduction
Needleman-Wunsch algorithm	https://en.wikipedia.org/wiki/Needleman%E2%80%93Wunsch_algorithm
documentation	https://galaxy-iuc.github.io/emboss-5.0-docs/stretcher.html
Smith-Waterman algorithm	https://en.wikipedia.org/wiki/Smith%E2%80%93Waterman_algorithm
	https://github.com/aziele/pairwise-sequence-alignment#requirements
	https://github.com/aziele/pairwise-sequence-alignment#installation
PyPI	https://pypi.org/project/pairwise-sequence-alignment/
	https://github.com/aziele/pairwise-sequence-alignment#quick-start
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	https://github.com/aziele/pairwise-sequence-alignment#attributes
	https://github.com/aziele/pairwise-sequence-alignment#methods
	https://github.com/aziele/pairwise-sequence-alignment#usage-examples
	https://github.com/aziele/pairwise-sequence-alignment#alignment-information
	https://github.com/aziele/pairwise-sequence-alignment#alignment-in-raw-format
	https://github.com/aziele/pairwise-sequence-alignment#alignment-in-fasta-format
	https://github.com/aziele/pairwise-sequence-alignment#alignment-iteration
	https://github.com/aziele/pairwise-sequence-alignment#alignment-iteration-with-index
	https://github.com/aziele/pairwise-sequence-alignment#query-coverage
	https://github.com/aziele/pairwise-sequence-alignment#scoring-scheme-for-alignment
	https://github.com/aziele/pairwise-sequence-alignment#statistical-significance-of-alignment
	https://github.com/aziele/pairwise-sequence-alignment#all-against-all-pairwise-alignments
	https://github.com/aziele/pairwise-sequence-alignment#all-against-all-pairwise-alignments-of-sequences-from-a-fasta-file
Biopython	https://biopython.org
	https://github.com/aziele/pairwise-sequence-alignment#tests
	https://github.com/aziele/pairwise-sequence-alignment#license
GNU General Public License, version 3	https://www.gnu.org/licenses/gpl-3.0.html
smith-waterman	https://github.com/topics/smith-waterman
needleman-wunsch	https://github.com/topics/needleman-wunsch
needle	https://github.com/topics/needle
water	https://github.com/topics/water
global-alignment	https://github.com/topics/global-alignment
sequence-alignment	https://github.com/topics/sequence-alignment
emboss	https://github.com/topics/emboss
protein-sequence	https://github.com/topics/protein-sequence
pairwise-alignment	https://github.com/topics/pairwise-alignment
local-alignment	https://github.com/topics/local-alignment
nucleotide-sequence	https://github.com/topics/nucleotide-sequence
Readme	https://github.com/aziele/pairwise-sequence-alignment#readme-ov-file
GPL-3.0 license	https://github.com/aziele/pairwise-sequence-alignment#GPL-3.0-1-ov-file
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