René's URL Explorer Experiment


Title: GitHub - adriaaula/dada2_guidelines: A repository with a general dada2 pipeline for amplicon processing · GitHub

Open Graph Title: GitHub - adriaaula/dada2_guidelines: A repository with a general dada2 pipeline for amplicon processing

X Title: GitHub - adriaaula/dada2_guidelines: A repository with a general dada2 pipeline for amplicon processing

Description: A repository with a general dada2 pipeline for amplicon processing - adriaaula/dada2_guidelines

Open Graph Description: A repository with a general dada2 pipeline for amplicon processing - adriaaula/dada2_guidelines

X Description: A repository with a general dada2 pipeline for amplicon processing - adriaaula/dada2_guidelines

Opengraph URL: https://github.com/adriaaula/dada2_guidelines

X: @github

direct link

Domain: github.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:78d2acd1-5e25-67fb-cf1b-1a4f7c4fa948
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id81D8:EE93:DFB9BB:13F4FDA:6A4BC8C3
html-safe-nonce00eb5def57f69cddb912a7a268e808c0fec5a2842cbc2f6da5d24d02b331c55a
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4MUQ4OkVFOTM6REZCOUJCOjEzRjRGREE6NkE0QkM4QzMiLCJ2aXNpdG9yX2lkIjoiNjU1NTkwOTkyODYxMDY3ODk3OSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac956dbcf403b2701ee780422b14da4bfa4269b58514ca625a7e73753aef45750f
hovercard-subject-tagrepository:137765331
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/adriaaula/dada2_guidelines
twitter:imagehttps://opengraph.githubassets.com/73bead3574ef5a364e455fd11826f28f37863388245328848960cebc378cfe13/adriaaula/dada2_guidelines
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/73bead3574ef5a364e455fd11826f28f37863388245328848960cebc378cfe13/adriaaula/dada2_guidelines
og:image:altA repository with a general dada2 pipeline for amplicon processing - adriaaula/dada2_guidelines
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None14aa00ce5bdb34d0eefb5facbffd7de9e144c688d8a93ef8df902d5f94b51dd7
turbo-cache-controlno-cache
go-importgithub.com/adriaaula/dada2_guidelines git https://github.com/adriaaula/dada2_guidelines.git
octolytics-dimension-user_id15213478
octolytics-dimension-user_loginadriaaula
octolytics-dimension-repository_id137765331
octolytics-dimension-repository_nwoadriaaula/dada2_guidelines
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id137765331
octolytics-dimension-repository_network_root_nwoadriaaula/dada2_guidelines
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release58b8f89190447502561829f30862aa0a99d53367
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://github.com/adriaaula/dada2_guidelines#start-of-content
https://github.com/
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fadriaaula%2Fdada2_guidelines
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub Copilot appDirect agents from issue to mergehttps://github.com/features/ai/github-app
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
View all resourceshttps://github.com/resources
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
GitHub Starshttps://stars.github.com
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2Fadriaaula%2Fdada2_guidelines
Sign up https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=adriaaula%2Fdada2_guidelines
Reloadhttps://github.com/adriaaula/dada2_guidelines
Reloadhttps://github.com/adriaaula/dada2_guidelines
Reloadhttps://github.com/adriaaula/dada2_guidelines
adriaaula https://github.com/adriaaula
dada2_guidelineshttps://github.com/adriaaula/dada2_guidelines
Notifications https://github.com/login?return_to=%2Fadriaaula%2Fdada2_guidelines
Fork 6 https://github.com/login?return_to=%2Fadriaaula%2Fdada2_guidelines
Star 10 https://github.com/login?return_to=%2Fadriaaula%2Fdada2_guidelines
Code https://github.com/adriaaula/dada2_guidelines
Issues 0 https://github.com/adriaaula/dada2_guidelines/issues
Pull requests 0 https://github.com/adriaaula/dada2_guidelines/pulls
Actions https://github.com/adriaaula/dada2_guidelines/actions
Projects https://github.com/adriaaula/dada2_guidelines/projects
Security and quality 0 https://github.com/adriaaula/dada2_guidelines/security
Insights https://github.com/adriaaula/dada2_guidelines/pulse
Code https://github.com/adriaaula/dada2_guidelines
Issues https://github.com/adriaaula/dada2_guidelines/issues
Pull requests https://github.com/adriaaula/dada2_guidelines/pulls
Actions https://github.com/adriaaula/dada2_guidelines/actions
Projects https://github.com/adriaaula/dada2_guidelines/projects
Security and quality https://github.com/adriaaula/dada2_guidelines/security
Insights https://github.com/adriaaula/dada2_guidelines/pulse
https://github.com/adriaaula/dada2_guidelines
Brancheshttps://github.com/adriaaula/dada2_guidelines/branches
Tagshttps://github.com/adriaaula/dada2_guidelines/tags
https://github.com/adriaaula/dada2_guidelines/branches
https://github.com/adriaaula/dada2_guidelines/tags
149 Commitshttps://github.com/adriaaula/dada2_guidelines/commits/master/
https://github.com/adriaaula/dada2_guidelines/commits/master/
datahttps://github.com/adriaaula/dada2_guidelines/tree/master/data
datahttps://github.com/adriaaula/dada2_guidelines/tree/master/data
scripts/preprocessinghttps://github.com/adriaaula/dada2_guidelines/tree/master/scripts/preprocessing
scripts/preprocessinghttps://github.com/adriaaula/dada2_guidelines/tree/master/scripts/preprocessing
.gitignorehttps://github.com/adriaaula/dada2_guidelines/blob/master/.gitignore
.gitignorehttps://github.com/adriaaula/dada2_guidelines/blob/master/.gitignore
README.mdhttps://github.com/adriaaula/dada2_guidelines/blob/master/README.md
README.mdhttps://github.com/adriaaula/dada2_guidelines/blob/master/README.md
READMEhttps://github.com/adriaaula/dada2_guidelines
https://github.com/adriaaula/dada2_guidelines#dada2-pipeline-adapted-for-slurm-cluster-specifically-ours-marbits
herehttp://www.riffomonas.org/reproducible_research/organization/#10
DADA2 pipeline official tutorialhttps://benjjneb.github.io/dada2/tutorial.html
DADA2 example workflowhttps://astrobiomike.github.io/amplicon/dada2_workflow_ex
https://github.com/adriaaula/dada2_guidelines#initial-setup
Github serverhttps://github.com/adriaaula/dada2_guidelines
marbits wikihttps://marbits.icm.csic.es/documentation/
https://github.com/adriaaula/dada2_guidelines#previous-steps
cutadapthttp://cutadapt.readthedocs.io/en/stable/guide.html
https://github.com/adriaaula/dada2_guidelines#0---qscore-plots
https://camo.githubusercontent.com/950cb22d78b9053cc9ff79f1d8c5136b6737b031a79b094bb66d4fc57ebdb36d/68747470733a2f2f62656e6a6a6e65622e6769746875622e696f2f64616461322f7475746f7269616c5f66696c65732f6669677572652d68746d6c2f7365652d7175616c6974792d462d312e706e67
https://camo.githubusercontent.com/f26627f0e028575f6de18237583cc70bc8d40926a5937290338ef7c67b9ca4ed/68747470733a2f2f62656e6a6a6e65622e6769746875622e696f2f64616461322f7475746f7269616c5f66696c65732f6669677572652d68746d6c2f7365652d7175616c6974792d522d312e706e67
https://github.com/adriaaula/dada2_guidelines#1---dada2
https://camo.githubusercontent.com/f4acdd11a7668a21a089f26221d96e61f16a16bc522f644b7db46267b6f6d40f/68747470733a2f2f62656e6a6a6e65622e6769746875622e696f2f64616461322f7475746f7269616c5f66696c65732f6669677572652d68746d6c2f706c6f742d6572726f72732d312e706e67
https://github.com/adriaaula/dada2_guidelines#2---merge-runs--remove-chimeras
Big datahttps://benjjneb.github.io/dada2/bigdata.html
https://github.com/adriaaula/dada2_guidelines#3--add-taxonomy
paperhttps://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-018-0521-5
https://github.com/adriaaula/dada2_guidelines#4---look-for-duplicatesclustering
herehttps://github.com/benjjneb/dada2/issues/626
https://github.com/adriaaula/dada2_guidelines#some-general-rules
seqkithttps://github.com/shenwei356/seqkit
herehttps://benjjneb.github.io/dada2/assign.html#species-assignment
amplicon https://github.com/topics/amplicon
16s https://github.com/topics/16s
18s https://github.com/topics/18s
dada2 https://github.com/topics/dada2
Readme https://github.com/adriaaula/dada2_guidelines#readme-ov-file
Please reload this pagehttps://github.com/adriaaula/dada2_guidelines
Activityhttps://github.com/adriaaula/dada2_guidelines/activity
6 forkshttps://github.com/adriaaula/dada2_guidelines/forks
Report repository https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fadriaaula%2Fdada2_guidelines&report=adriaaula+%28user%29
Releaseshttps://github.com/adriaaula/dada2_guidelines/releases
Packages 0https://github.com/users/adriaaula/packages?repo_name=dada2_guidelines
Please reload this pagehttps://github.com/adriaaula/dada2_guidelines
Contributorshttps://github.com/adriaaula/dada2_guidelines/graphs/contributors
Please reload this pagehttps://github.com/adriaaula/dada2_guidelines
R 63.7% https://github.com/adriaaula/dada2_guidelines/search?l=r
Shell 36.3% https://github.com/adriaaula/dada2_guidelines/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.