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Title: History for data - WrightonLabCSU/DRAM · GitHub

Open Graph Title: History for data - WrightonLabCSU/DRAM

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Description: Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes - History for data - WrightonLabCSU/DRAM

Open Graph Description: Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes - History for data - WrightonLabCSU/DRAM

X Description: Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes - History for data - WrightonLabCSU/DRAM

Opengraph URL: https://github.com/WrightonLabCSU/DRAM

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Update genome summary form for dbcanhttps://github.com/WrightonLabCSU/DRAM/commit/d447e1ead53339db775b5fe51d89749dbddd8051
https://github.com/rmFlynn
rmFlynnhttps://github.com/WrightonLabCSU/DRAM/commits?author=rmFlynn
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Bring public DRAM up to speck, with in househttps://github.com/WrightonLabCSU/DRAM/commit/7e1f58b683227c383e0c0ca314aac2ea4f00a077
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Add anammoxhttps://github.com/WrightonLabCSU/DRAM/commit/c542945598cf4d62b5964b53e541aaa30ae3e468
c542945https://github.com/WrightonLabCSU/DRAM/commit/c542945598cf4d62b5964b53e541aaa30ae3e468
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Remove AA4 from polyphenolics liquor, too cryptichttps://github.com/WrightonLabCSU/DRAM/commit/90786eddfe5b13d50d2f2eb8cb62dc6d78ccd3d8
90786edhttps://github.com/WrightonLabCSU/DRAM/commit/90786eddfe5b13d50d2f2eb8cb62dc6d78ccd3d8
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No longer accept K05810 as indicative of polyphenolic metabolismhttps://github.com/WrightonLabCSU/DRAM/commit/9dffc04db6302a0bdb51e5ceedf02f91cf1a5e20
9dffc04https://github.com/WrightonLabCSU/DRAM/commit/9dffc04db6302a0bdb51e5ceedf02f91cf1a5e20
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Fix previous commit. Needed to move the rest of the statement down.https://github.com/WrightonLabCSU/DRAM/commit/286d72d5a17870939430e13084b7543eadfc2d6b
286d72dhttps://github.com/WrightonLabCSU/DRAM/commit/286d72d5a17870939430e13084b7543eadfc2d6b
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Add sugar metabolism to distillatehttps://github.com/WrightonLabCSU/DRAM/commit/6183a0800a0ccea381ea206ed65b89be11954240
6183a08https://github.com/WrightonLabCSU/DRAM/commit/6183a0800a0ccea381ea206ed65b89be11954240
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Add K00283 for glycine cleave system module in distillate.https://github.com/WrightonLabCSU/DRAM/commit/4583163c3d9ddc828299740c82e819f3eaead643
4583163https://github.com/WrightonLabCSU/DRAM/commit/4583163c3d9ddc828299740c82e819f3eaead643
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CAZY to CAZy in producthttps://github.com/WrightonLabCSU/DRAM/commit/726d34fe44d7503932cbc788f6d767eb40ac4ca6
726d34fhttps://github.com/WrightonLabCSU/DRAM/commit/726d34fe44d7503932cbc788f6d767eb40ac4ca6
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Remove rhodanase, less than or equal to 2500, cazy or merops makes a Dhttps://github.com/WrightonLabCSU/DRAM/commit/037388ff0c6ad76850bfa5336ffaaae5921c9c01
037388fhttps://github.com/WrightonLabCSU/DRAM/commit/037388ff0c6ad76850bfa5336ffaaae5921c9c01
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Fix to duplicate in the function_heatmap_form.tsvhttps://github.com/WrightonLabCSU/DRAM/commit/b657b23b1a13a6e9ec7964a62f329eaa285efc79
b657b23https://github.com/WrightonLabCSU/DRAM/commit/b657b23b1a13a6e9ec7964a62f329eaa285efc79
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Update amg_database and make all K flags get M flagshttps://github.com/WrightonLabCSU/DRAM/commit/26e8684e61b74280f898f110cc1190287320554d
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Add GH2 as Beta-Mannan oligo degradationhttps://github.com/WrightonLabCSU/DRAM/commit/37f2829dfa75b9886987df79e0bbf6f3cdc4daaf
37f2829https://github.com/WrightonLabCSU/DRAM/commit/37f2829dfa75b9886987df79e0bbf6f3cdc4daaf
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Update distillate and function liquor sheets.https://github.com/WrightonLabCSU/DRAM/commit/8c8433ada714e2996376962e4f3fbcee859682fb
8c8433ahttps://github.com/WrightonLabCSU/DRAM/commit/8c8433ada714e2996376962e4f3fbcee859682fb
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Update CAZymes to 2019 annotations from dbCANhttps://github.com/WrightonLabCSU/DRAM/commit/33adcd4820e7308b6ade093f7051272bba326227
33adcd4https://github.com/WrightonLabCSU/DRAM/commit/33adcd4820e7308b6ade093f7051272bba326227
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Add potential amg column to genome summary form, update function heatmaphttps://github.com/WrightonLabCSU/DRAM/commit/05596362a891294164045780fd64e3077c2f29d2
0559636https://github.com/WrightonLabCSU/DRAM/commit/05596362a891294164045780fd64e3077c2f29d2
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Various small naming fixeshttps://github.com/WrightonLabCSU/DRAM/commit/831167382916fd2410397706e577de8e07e120b9
8311673https://github.com/WrightonLabCSU/DRAM/commit/831167382916fd2410397706e577de8e07e120b9
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Fix mttb and mtmb categories in function_heatmap_form.tsvhttps://github.com/WrightonLabCSU/DRAM/commit/2191f899756d3ac373ef8ec9cf53d1fab5fc8865
2191f89https://github.com/WrightonLabCSU/DRAM/commit/2191f899756d3ac373ef8ec9cf53d1fab5fc8865
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Fix tsv version of liquor to do based on pivotshttps://github.com/WrightonLabCSU/DRAM/commit/68a7f91242b1db97df6b0a42c4bb0ab9c72dcfe4
68a7f91https://github.com/WrightonLabCSU/DRAM/commit/68a7f91242b1db97df6b0a42c4bb0ab9c72dcfe4
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Add flagella to distillatehttps://github.com/WrightonLabCSU/DRAM/commit/95301c77443884f364e2a5034205068ae0acbd91
95301c7https://github.com/WrightonLabCSU/DRAM/commit/95301c77443884f364e2a5034205068ae0acbd91
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Add CRISPR and cobalamin synthesis to distillate, fix white spacehttps://github.com/WrightonLabCSU/DRAM/commit/ebe81e02413e260076d223f1a2afda0d088a850d
ebe81e0https://github.com/WrightonLabCSU/DRAM/commit/ebe81e02413e260076d223f1a2afda0d088a850d
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Add pmo and mmo to separate methane => methanol, with oxygen in liquorhttps://github.com/WrightonLabCSU/DRAM/commit/9da636aaf2d3f04a92027843024e8d4e4cb1559b
9da636ahttps://github.com/WrightonLabCSU/DRAM/commit/9da636aaf2d3f04a92027843024e8d4e4cb1559b
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Get rid of extra whitespace in function heatmaphttps://github.com/WrightonLabCSU/DRAM/commit/d7bdd442bcb89e3c95df1cf8096c3e0d96e5f7d3
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Function heatmap form fixes of CAZyshttps://github.com/WrightonLabCSU/DRAM/commit/da0acda09c3676817c43c79d51eae18c373716ba
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Fixing whitespace in function heatmap formhttps://github.com/WrightonLabCSU/DRAM/commit/59eefb5d560a17dfabd146a10bfc9ff1e1e3e78a
59eefb5https://github.com/WrightonLabCSU/DRAM/commit/59eefb5d560a17dfabd146a10bfc9ff1e1e3e78a
https://github.com/WrightonLabCSU/DRAM/blob/59eefb5d560a17dfabd146a10bfc9ff1e1e3e78a/data
https://github.com/WrightonLabCSU/DRAM/tree/59eefb5d560a17dfabd146a10bfc9ff1e1e3e78a
Add ETC complex heatmap to DRAM liquorhttps://github.com/WrightonLabCSU/DRAM/commit/c483aa8b81e740b9aea81ebb2b80624bc7829a04
c483aa8https://github.com/WrightonLabCSU/DRAM/commit/c483aa8b81e740b9aea81ebb2b80624bc7829a04
https://github.com/WrightonLabCSU/DRAM/blob/c483aa8b81e740b9aea81ebb2b80624bc7829a04/data
https://github.com/WrightonLabCSU/DRAM/tree/c483aa8b81e740b9aea81ebb2b80624bc7829a04
Update module list and fix function_heatmap_form for summarizehttps://github.com/WrightonLabCSU/DRAM/commit/43fd1ed76e488969dd5bb60b9088f3e8c162b7d3
43fd1edhttps://github.com/WrightonLabCSU/DRAM/commit/43fd1ed76e488969dd5bb60b9088f3e8c162b7d3
https://github.com/WrightonLabCSU/DRAM/blob/43fd1ed76e488969dd5bb60b9088f3e8c162b7d3/data
https://github.com/WrightonLabCSU/DRAM/tree/43fd1ed76e488969dd5bb60b9088f3e8c162b7d3
Fix messed up white space in genome_summary_form.tsvhttps://github.com/WrightonLabCSU/DRAM/commit/58c9c0760be351b0261da03b343f90ecd4254c6a
58c9c07https://github.com/WrightonLabCSU/DRAM/commit/58c9c0760be351b0261da03b343f90ecd4254c6a
https://github.com/WrightonLabCSU/DRAM/blob/58c9c0760be351b0261da03b343f90ecd4254c6a/data
https://github.com/WrightonLabCSU/DRAM/tree/58c9c0760be351b0261da03b343f90ecd4254c6a
Fix messed up white space in genome_summary_form.tsvhttps://github.com/WrightonLabCSU/DRAM/commit/74473bb888ddba81bd253fb5c9fc999cc41db9d8
74473bbhttps://github.com/WrightonLabCSU/DRAM/commit/74473bb888ddba81bd253fb5c9fc999cc41db9d8
https://github.com/WrightonLabCSU/DRAM/blob/74473bb888ddba81bd253fb5c9fc999cc41db9d8/data
https://github.com/WrightonLabCSU/DRAM/tree/74473bb888ddba81bd253fb5c9fc999cc41db9d8
Add VGF summary distillate and liquorhttps://github.com/WrightonLabCSU/DRAM/commit/ee84a26992e546e2e8243161e8440d3efafb7af8
ee84a26https://github.com/WrightonLabCSU/DRAM/commit/ee84a26992e546e2e8243161e8440d3efafb7af8
https://github.com/WrightonLabCSU/DRAM/blob/ee84a26992e546e2e8243161e8440d3efafb7af8/data
https://github.com/WrightonLabCSU/DRAM/tree/ee84a26992e546e2e8243161e8440d3efafb7af8
First version of DRAM-v annotationhttps://github.com/WrightonLabCSU/DRAM/commit/f367c8843a679352a583f71df7b898175e884dbe
f367c88https://github.com/WrightonLabCSU/DRAM/commit/f367c8843a679352a583f71df7b898175e884dbe
https://github.com/WrightonLabCSU/DRAM/blob/f367c8843a679352a583f71df7b898175e884dbe/data
https://github.com/WrightonLabCSU/DRAM/tree/f367c8843a679352a583f71df7b898175e884dbe
Remove more bad excel characters from genome_summaryhttps://github.com/WrightonLabCSU/DRAM/commit/baf4215ea007453bea798070a5642dcf5ad05f3e
baf4215https://github.com/WrightonLabCSU/DRAM/commit/baf4215ea007453bea798070a5642dcf5ad05f3e
https://github.com/WrightonLabCSU/DRAM/blob/baf4215ea007453bea798070a5642dcf5ad05f3e/data
https://github.com/WrightonLabCSU/DRAM/tree/baf4215ea007453bea798070a5642dcf5ad05f3e
Incorporate Pengfei's latest updates to genome summaryhttps://github.com/WrightonLabCSU/DRAM/commit/f6dcd9f7cb056e33a36c1efd6f145da67a742a1d
f6dcd9fhttps://github.com/WrightonLabCSU/DRAM/commit/f6dcd9f7cb056e33a36c1efd6f145da67a742a1d
https://github.com/WrightonLabCSU/DRAM/blob/f6dcd9f7cb056e33a36c1efd6f145da67a742a1d/data
https://github.com/WrightonLabCSU/DRAM/tree/f6dcd9f7cb056e33a36c1efd6f145da67a742a1d
Merge branch 'make_liquor' into make_distillatehttps://github.com/WrightonLabCSU/DRAM/commit/2ae1204f8303576d7d463b138f6aa7e79ef6cc13
2ae1204https://github.com/WrightonLabCSU/DRAM/commit/2ae1204f8303576d7d463b138f6aa7e79ef6cc13
https://github.com/WrightonLabCSU/DRAM/blob/2ae1204f8303576d7d463b138f6aa7e79ef6cc13/data
https://github.com/WrightonLabCSU/DRAM/tree/2ae1204f8303576d7d463b138f6aa7e79ef6cc13
A prettier genome summary with multiple pages in excel workbookhttps://github.com/WrightonLabCSU/DRAM/commit/7f29f0b376bf9f9eae2f23234460ee93763a49c1
7f29f0bhttps://github.com/WrightonLabCSU/DRAM/commit/7f29f0b376bf9f9eae2f23234460ee93763a49c1
https://github.com/WrightonLabCSU/DRAM/blob/7f29f0b376bf9f9eae2f23234460ee93763a49c1/data
https://github.com/WrightonLabCSU/DRAM/tree/7f29f0b376bf9f9eae2f23234460ee93763a49c1
Nexthttps://github.com/WrightonLabCSU/DRAM/commits/master/data?after=fe61d759303f30db058d5d505c448b28e41b03f1+34
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