René's URL Explorer Experiment

Title: GitHub - Topp-Roots-Lab/TopoRoot · GitHub

Open Graph Title: GitHub - Topp-Roots-Lab/TopoRoot

X Title: GitHub - Topp-Roots-Lab/TopoRoot

Description: Contribute to Topp-Roots-Lab/TopoRoot development by creating an account on GitHub.

Open Graph Description: Contribute to Topp-Roots-Lab/TopoRoot development by creating an account on GitHub.

X Description: Contribute to Topp-Roots-Lab/TopoRoot development by creating an account on GitHub.

Mail addresses
danzeng8@gmail.com

Opengraph URL: https://github.com/Topp-Roots-Lab/TopoRoot

X: @github

direct link

Domain: github.com

route-pattern	/:user_id/:repository
route-controller	files
route-action	disambiguate
fetch-nonce	v2:30190670-ebbb-6cbe-b2ec-c72d235d87c9
current-catalog-service-hash	f3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id	C3D0:CE3E1:19DB1C:2276B7:6A592288
html-safe-nonce	da529b0025df1f204bab5a420e4c87bb673622bf33bd92a7beef8901575fa819
visitor-payload	eyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJDM0QwOkNFM0UxOjE5REIxQzoyMjc2Qjc6NkE1OTIyODgiLCJ2aXNpdG9yX2lkIjoiNzQwNzU0MDQ2OTU0MTQ0NjI4MCIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac	8f10ff85e7632c14b01bf9d77a46def38283c051f729f6a488bd87e7d98defb1
hovercard-subject-tag	repository:399965674
github-keyboard-shortcuts	repository,copilot
google-site-verification	Apib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-url	https://collector.github.com/github/collect
analytics-location	//
fb:app_id	1401488693436528
apple-itunes-app	app-id=1477376905, app-argument=https://github.com/Topp-Roots-Lab/TopoRoot
twitter:image	https://opengraph.githubassets.com/f40ee53dc2ce0376af151e5ffb5339d5c4bd212f9d591708e496f11bb3de968c/Topp-Roots-Lab/TopoRoot
twitter:card	summary_large_image
og:image	https://opengraph.githubassets.com/f40ee53dc2ce0376af151e5ffb5339d5c4bd212f9d591708e496f11bb3de968c/Topp-Roots-Lab/TopoRoot
og:image:alt	Contribute to Topp-Roots-Lab/TopoRoot development by creating an account on GitHub.
og:image:width	1200
og:image:height	600
og:site_name	GitHub
og:type	object
hostname	github.com
expected-hostname	github.com
None	30abb2b48d3b1b476bbaf01f49ead8ef91062bfd762d3fa28a956f4c99653343
turbo-cache-control	no-cache
go-import	github.com/Topp-Roots-Lab/TopoRoot git https://github.com/Topp-Roots-Lab/TopoRoot.git
octolytics-dimension-user_id	26209660
octolytics-dimension-user_login	Topp-Roots-Lab
octolytics-dimension-repository_id	399965674
octolytics-dimension-repository_nwo	Topp-Roots-Lab/TopoRoot
octolytics-dimension-repository_public	true
octolytics-dimension-repository_is_fork	true
octolytics-dimension-repository_parent_id	315812419
octolytics-dimension-repository_parent_nwo	danzeng8/TopoRoot
octolytics-dimension-repository_network_root_id	315812419
octolytics-dimension-repository_network_root_nwo	danzeng8/TopoRoot
turbo-body-classes	logged-out env-production page-responsive
disable-turbo	false
browser-stats-url	https://api.github.com/_private/browser/stats
browser-errors-url	https://api.github.com/_private/browser/errors
release	f2e5b4fd472ea10ac216e358bbd0821a90dae8bb
ui-target	full
theme-color	#1e2327
color-scheme	light dark

Links:

Skip to content	https://github.com/Topp-Roots-Lab/TopoRoot#start-of-content
	https://github.com/
Sign in	https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FTopp-Roots-Lab%2FTopoRoot
GitHub CopilotWrite better code with AI	https://github.com/features/copilot
GitHub Copilot appDirect agents from issue to merge	https://github.com/features/ai/github-app
MCP RegistryNewIntegrate external tools	https://github.com/mcp
ActionsAutomate any workflow	https://github.com/features/actions
CodespacesInstant dev environments	https://github.com/features/codespaces
IssuesPlan and track work	https://github.com/features/issues
Code ReviewManage code changes	https://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilities	https://github.com/security/advanced-security
Code securitySecure your code as you build	https://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they start	https://github.com/security/advanced-security/secret-protection
Why GitHub	https://github.com/why-github
Documentation	https://docs.github.com
Blog	https://github.blog
Changelog	https://github.blog/changelog
Marketplace	https://github.com/marketplace
View all features	https://github.com/features
Enterprises	https://github.com/enterprise
Small and medium teams	https://github.com/team
Startups	https://github.com/enterprise/startups
Nonprofits	https://github.com/solutions/industry/nonprofits
App Modernization	https://github.com/solutions/use-case/app-modernization
DevSecOps	https://github.com/solutions/use-case/devsecops
DevOps	https://github.com/solutions/use-case/devops
CI/CD	https://github.com/solutions/use-case/ci-cd
View all use cases	https://github.com/solutions/use-case
Healthcare	https://github.com/solutions/industry/healthcare
Financial services	https://github.com/solutions/industry/financial-services
Manufacturing	https://github.com/solutions/industry/manufacturing
Government	https://github.com/solutions/industry/government
View all industries	https://github.com/solutions/industry
View all solutions	https://github.com/solutions
AI	https://github.com/resources/articles?topic=ai
Software Development	https://github.com/resources/articles?topic=software-development
DevOps	https://github.com/resources/articles?topic=devops
Security	https://github.com/resources/articles?topic=security
View all topics	https://github.com/resources/articles
Customer stories	https://github.com/customer-stories
Events & webinars	https://github.com/resources/events
Ebooks & reports	https://github.com/resources/whitepapers
Business insights	https://github.com/solutions/executive-insights
GitHub Skills	https://skills.github.com
Documentation	https://docs.github.com
Customer support	https://support.github.com
Community forum	https://github.com/orgs/community/discussions
Trust center	https://github.com/trust-center
Partners	https://github.com/partners
View all resources	https://github.com/resources
GitHub SponsorsFund open source developers	https://github.com/open-source/sponsors
Security Lab	https://securitylab.github.com
Maintainer Community	https://maintainers.github.com
Accelerator	https://github.com/open-source/accelerator
GitHub Stars	https://stars.github.com
Archive Program	https://archiveprogram.github.com
Topics	https://github.com/topics
Trending	https://github.com/trending
Collections	https://github.com/collections
Enterprise platformAI-powered developer platform	https://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security features	https://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI features	https://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 support	https://github.com/enterprise/premium-support
Pricing	https://github.com/pricing
Search syntax tips	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentation	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in	https://github.com/login?return_to=https%3A%2F%2Fgithub.com%2FTopp-Roots-Lab%2FTopoRoot
Sign up	https://github.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=Topp-Roots-Lab%2FTopoRoot
Reload	https://github.com/Topp-Roots-Lab/TopoRoot
Reload	https://github.com/Topp-Roots-Lab/TopoRoot
Reload	https://github.com/Topp-Roots-Lab/TopoRoot
Please reload this page	https://github.com/Topp-Roots-Lab/TopoRoot
Topp-Roots-Lab	https://github.com/Topp-Roots-Lab
TopoRoot	https://github.com/Topp-Roots-Lab/TopoRoot
danzeng8/TopoRoot	https://github.com/danzeng8/TopoRoot
Notifications	https://github.com/login?return_to=%2FTopp-Roots-Lab%2FTopoRoot
Fork 0	https://github.com/login?return_to=%2FTopp-Roots-Lab%2FTopoRoot
Star 1	https://github.com/login?return_to=%2FTopp-Roots-Lab%2FTopoRoot
Code	https://github.com/Topp-Roots-Lab/TopoRoot
Pull requests 0	https://github.com/Topp-Roots-Lab/TopoRoot/pulls
Actions	https://github.com/Topp-Roots-Lab/TopoRoot/actions
Projects	https://github.com/Topp-Roots-Lab/TopoRoot/projects
Security and quality 0	https://github.com/Topp-Roots-Lab/TopoRoot/security
Insights	https://github.com/Topp-Roots-Lab/TopoRoot/pulse
Code	https://github.com/Topp-Roots-Lab/TopoRoot
Pull requests	https://github.com/Topp-Roots-Lab/TopoRoot/pulls
Actions	https://github.com/Topp-Roots-Lab/TopoRoot/actions
Projects	https://github.com/Topp-Roots-Lab/TopoRoot/projects
Security and quality	https://github.com/Topp-Roots-Lab/TopoRoot/security
Insights	https://github.com/Topp-Roots-Lab/TopoRoot/pulse
	https://github.com/Topp-Roots-Lab/TopoRoot
Branches	https://github.com/Topp-Roots-Lab/TopoRoot/branches
Tags	https://github.com/Topp-Roots-Lab/TopoRoot/tags
	https://github.com/Topp-Roots-Lab/TopoRoot/branches
	https://github.com/Topp-Roots-Lab/TopoRoot/tags
123 Commits	https://github.com/Topp-Roots-Lab/TopoRoot/commits/master/
	https://github.com/Topp-Roots-Lab/TopoRoot/commits/master/
TopoSimplifier	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/TopoSimplifier
TopoSimplifier	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/TopoSimplifier
et	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/et
et	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/et
example_root/in	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/example_root/in
example_root/in	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/example_root/in
fiji-win64	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/fiji-win64
fiji-win64	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/fiji-win64
gui	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/gui
gui	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/gui
pics	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/pics
pics	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/pics
tmp	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/tmp
tmp	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/tmp
voxelcore	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/voxelcore
voxelcore	https://github.com/Topp-Roots-Lab/TopoRoot/tree/master/voxelcore
.gitattributes	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/.gitattributes
.gitattributes	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/.gitattributes
ReadMe.md	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/ReadMe.md
ReadMe.md	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/ReadMe.md
TopoRoot.exe	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/TopoRoot.exe
TopoRoot.exe	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/TopoRoot.exe
downsample.py	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/downsample.py
downsample.py	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/downsample.py
downsample_batch.py	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/downsample_batch.py
downsample_batch.py	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/downsample_batch.py
root_traits_auto.exe	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/root_traits_auto.exe
root_traits_auto.exe	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/root_traits_auto.exe
skeletonMST.exe	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/skeletonMST.exe
skeletonMST.exe	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/skeletonMST.exe
toporoot.py	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/toporoot.py
toporoot.py	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/toporoot.py
toporoot_batch.py	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/toporoot_batch.py
toporoot_batch.py	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/toporoot_batch.py
vcruntime140_1.dll	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/vcruntime140_1.dll
vcruntime140_1.dll	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/vcruntime140_1.dll
README	https://github.com/Topp-Roots-Lab/TopoRoot
	https://github.com/Topp-Roots-Lab/TopoRoot#toporoot-a-method-for-computing-hierarchy-and-fine-grained-traits-of-maize-roots-from-x-ray-ct-images
	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/pics/pipeline.PNG
	https://github.com/Topp-Roots-Lab/TopoRoot#introduction
https://rdcu.be/cC9Ng	https://rdcu.be/cC9Ng
	https://github.com/Topp-Roots-Lab/TopoRoot#installation-and-execution
https://github.com/danzeng8/TopoRoot.git	https://github.com/danzeng8/TopoRoot.git
	https://github.com/Topp-Roots-Lab/TopoRoot#experimental-data
https://wustl.box.com/s/yklsinv5v86est2vxk20bwt8e6inq7l0	https://wustl.box.com/s/yklsinv5v86est2vxk20bwt8e6inq7l0
	https://github.com/Topp-Roots-Lab/TopoRoot#understanding-the-output
	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/pics/traits.PNG
	https://github.com/Topp-Roots-Lab/TopoRoot#graphical-user-interface
	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/pics/init_skel.png
	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/pics/shape.png
	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/pics/hierarchy.png
	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/pics/stem.png
	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/pics/plane.png
	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/pics/abovebelow.png
	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/pics/whorls.png
	https://github.com/Topp-Roots-Lab/TopoRoot#picking-the-shape-kernel-and-neighborhood-thresholds
	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/pics/three-iso-values.png
UCSF Chimera	https://www.cgl.ucsf.edu/chimera/
	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/pics/corn_root_chimera.PNG
	https://github.com/Topp-Roots-Lab/TopoRoot#downsampling
	https://github.com/Topp-Roots-Lab/TopoRoot#batch-processing-mode
	https://github.com/Topp-Roots-Lab/TopoRoot#acknowledgements
	https://github.com/Topp-Roots-Lab/TopoRoot#references
https://doi.org/10.1186/s13007-021-00829-z	https://doi.org/10.1186/s13007-021-00829-z
Project Website	https://danzeng8.github.io/topo-simplifier/
Journal Cover	https://nph.onlinelibrary.wiley.com/toc/14698137/2020/226/6
Danforth	https://www.danforthcenter.org/news/looking-inside-grass-flowers/
Wash U	https://engineering.wustl.edu/news/2020/3D-images-allow-detailed-insight-into-grasses.html
Project website	https://yajieyan.github.io/project/voxelcore/
Project website	https://yajieyan.github.io/project/et/
	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/pics/dan_seeds.jpg
	https://github.com/Topp-Roots-Lab/TopoRoot/blob/master/pics/dan_seeds_2.jpg
Readme	https://github.com/Topp-Roots-Lab/TopoRoot#readme-ov-file
Please reload this page	https://github.com/Topp-Roots-Lab/TopoRoot
Activity	https://github.com/Topp-Roots-Lab/TopoRoot/activity
Custom properties	https://github.com/Topp-Roots-Lab/TopoRoot/custom-properties
0 forks	https://github.com/Topp-Roots-Lab/TopoRoot/forks
Report repository	https://github.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FTopp-Roots-Lab%2FTopoRoot&report=Topp-Roots-Lab+%28user%29
Releases	https://github.com/Topp-Roots-Lab/TopoRoot/releases
Packages 0	https://github.com/orgs/Topp-Roots-Lab/packages?repo_name=TopoRoot
Please reload this page	https://github.com/Topp-Roots-Lab/TopoRoot
Contributors	https://github.com/Topp-Roots-Lab/TopoRoot/graphs/contributors
Please reload this page	https://github.com/Topp-Roots-Lab/TopoRoot
	https://github.com
Terms	https://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacy	https://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Security	https://github.com/security
Status	https://www.githubstatus.com/
Community	https://github.community/
Docs	https://docs.github.com/
Contact	https://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.